mRNA_L-elsbetiae_contig1525.3732.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1525.3732.1 vs. uniprot
Match: D7G753_ECTSI (Tetratricopeptide domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G753_ECTSI) HSP 1 Score: 485 bits (1249), Expect = 1.800e-165 Identity = 332/465 (71.40%), Postives = 358/465 (76.99%), Query Frame = 1 Query: 10 SVDIVQSNFRASAAKQEDLFTLTALAHLLADLGQNDEAALYFEKALKCPRHAPTGGSSPCDSETRGLAMGWYAALVEANGSEGAAKAEGLYRAALRLNERDPLAMGNYAVFLHRIKRDHRAAAAAYKEAVKAHPTHSSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLGNLAVLLHGQPHTSAAVLDKIEGLYKRAVHADPANANNFSNFGLFLAEKRADVVGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSEAKQLFERAVRASPSDALTRADYGRFLALVEKNLDGALENLREAIRCDPDCTTAQFNLGKLLLRRRHTEPPRGGSTVSARGETAGGNVREAKDLLQKVIRDNKEHSGARLCLAQALAEEGGFEGAAKLCKSALKGGTTCTDVDAMSHLASLLGKRGMSDTVIQT 1404 +VD V+S+FRA+ AKQED+FTLTALAHLLADLG+NDEA +FEKALKCP HA GS D ETRGLAMGWYAALVE NGSEGA KAEGLY+ ALR+N+RD LAMGNYAVFLH+IKRDHRAAA A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLGNLAVLLHGQ TSA +LDKIEGLYKRAVHADP NANNFSNFGLFLAEKR DVVGAE XXXXXXXXXXXXXXXXXXXX EAKQLFERAVR+SPSDALTRADYGRFLA+VE NL+GALENLREAIRCDPDCTTAQFNLGKLLL+RR TEP GS R + AGG+ REAK LL+KVIRDN+EHSGA+LCLA ALAEEG FE AA LC++ALKG T CTDV AMS+LA+LLG+ GMSDTVI T Sbjct: 14 AVDSVESSFRAAVAKQEDVFTLTALAHLLADLGRNDEAGSFFEKALKCPHHATKHGSPSSDGETRGLAMGWYAALVEGNGSEGAVKAEGLYKRALRINDRDALAMGNYAVFLHKIKRDHRAAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLGNLAVLLHGQLCTSAPLLDKIEGLYKRAVHADPVNANNFSNFGLFLAEKRGDVVGAEAXXXXXXXXXXXXXXXXXXXXVLLDSSLKQ--------------------------------------QEAKQLFERAVRSSPSDALTRADYGRFLAMVENNLEGALENLREAIRCDPDCTTAQFNLGKLLLQRRRTEPASEGSG-GIRRKAAGGDAREAKVLLRKVIRDNEEHSGAQLCLAHALAEEGDFEDAANLCRAALKG-TACTDVAAMSNLAALLGRNGMSDTVIAT 438
BLAST of mRNA_L-elsbetiae_contig1525.3732.1 vs. uniprot
Match: A0A835YUW1_9STRA (Tetratricopeptide domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW1_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.960e-20 Identity = 59/114 (51.75%), Postives = 73/114 (64.04%), Query Frame = 1 Query: 22 VQSNFRASAAKQEDLFTLTALAHLLADLGQNDEAALYFEKALKCPRHAPTGGSSPCDSETRGLAMGWYAALVEANGSEGAAKAEGLYRAALRLNERDPLAMGNYAVFLHRIKRD 363 +++ F A +QED+F+L+A A +L G D A +F+KA+ A P ET L +GWYA LVE G GAA+AE LYR ALRL RDPL+MGNYAVFLHRIKRD Sbjct: 30 LRAPFDARLQQQEDVFSLSAYAQVLLATGDIDGAECHFKKAIDAGEDA-----GPEAEETLCLTLGWYAGLVEGRGKTGAAQAEALYRRALRLRPRDPLSMGNYAVFLHRIKRD 138 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1525.3732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1525.3732.1 >prot_L-elsbetiae_contig1525.3732.1 ID=prot_L-elsbetiae_contig1525.3732.1|Name=mRNA_L-elsbetiae_contig1525.3732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=527bp MDKSVDIVQSNFRASAAKQEDLFTLTALAHLLADLGQNDEAALYFEKALKback to top mRNA from alignment at L-elsbetiae_contig1525:13354..18127+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1525.3732.1 ID=mRNA_L-elsbetiae_contig1525.3732.1|Name=mRNA_L-elsbetiae_contig1525.3732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4774bp|location=Sequence derived from alignment at L-elsbetiae_contig1525:13354..18127+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1525:13354..18127+ >mRNA_L-elsbetiae_contig1525.3732.1 ID=mRNA_L-elsbetiae_contig1525.3732.1|Name=mRNA_L-elsbetiae_contig1525.3732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3162bp|location=Sequence derived from alignment at L-elsbetiae_contig1525:13354..18127+ (Laminarionema elsbetiae ELsaHSoW15)back to top |