prot_L-elsbetiae_contig1525.3732.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1525.3732.1
Unique Nameprot_L-elsbetiae_contig1525.3732.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length527
Homology
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BLAST of mRNA_L-elsbetiae_contig1525.3732.1 vs. uniprot
Match: D7G753_ECTSI (Tetratricopeptide domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G753_ECTSI)

HSP 1 Score: 485 bits (1249), Expect = 1.800e-165
Identity = 332/465 (71.40%), Postives = 358/465 (76.99%), Query Frame = 0 
Query:    4 SVDIVQSNFRASAAKQEDLFTLTALAHLLADLGQNDEAALYFEKALKCPRHAPTGGSSPCDSETRGLAMGWYAALVEANGSEGAAKAEGLYRAALRLNERDPLAMGNYAVFLHRIKRDHRAAAAAYKEAVKAHPTHSSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLGNLAVLLHGQPHTSAAVLDKIEGLYKRAVHADPANANNFSNFGLFLAEKRADVVGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSEAKQLFERAVRASPSDALTRADYGRFLALVEKNLDGALENLREAIRCDPDCTTAQFNLGKLLLRRRHTEPPRGGSTVSARGETAGGNVREAKDLLQKVIRDNKEHSGARLCLAQALAEEGGFEGAAKLCKSALKGGTTCTDVDAMSHLASLLGKRGMSDTVIQT 468
            +VD V+S+FRA+ AKQED+FTLTALAHLLADLG+NDEA  +FEKALKCP HA   GS   D ETRGLAMGWYAALVE NGSEGA KAEGLY+ ALR+N+RD LAMGNYAVFLH+IKRDHRAAA A              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLGNLAVLLHGQ  TSA +LDKIEGLYKRAVHADP NANNFSNFGLFLAEKR DVVGAE XXXXXXXXXXXXXXXXXXXX                                                EAKQLFERAVR+SPSDALTRADYGRFLA+VE NL+GALENLREAIRCDPDCTTAQFNLGKLLL+RR TEP   GS    R + AGG+ REAK LL+KVIRDN+EHSGA+LCLA ALAEEG FE AA LC++ALKG T CTDV AMS+LA+LLG+ GMSDTVI T
Sbjct:   14 AVDSVESSFRAAVAKQEDVFTLTALAHLLADLGRNDEAGSFFEKALKCPHHATKHGSPSSDGETRGLAMGWYAALVEGNGSEGAVKAEGLYKRALRINDRDALAMGNYAVFLHKIKRDHRAAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLGNLAVLLHGQLCTSAPLLDKIEGLYKRAVHADPVNANNFSNFGLFLAEKRGDVVGAEAXXXXXXXXXXXXXXXXXXXXVLLDSSLKQ--------------------------------------QEAKQLFERAVRSSPSDALTRADYGRFLAMVENNLEGALENLREAIRCDPDCTTAQFNLGKLLLQRRRTEPASEGSG-GIRRKAAGGDAREAKVLLRKVIRDNEEHSGAQLCLAHALAEEGDFEDAANLCRAALKG-TACTDVAAMSNLAALLGRNGMSDTVIAT 438
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BLAST of mRNA_L-elsbetiae_contig1525.3732.1 vs. uniprot
Match: A0A835YUW1_9STRA (Tetratricopeptide domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.960e-20
Identity = 59/114 (51.75%), Postives = 73/114 (64.04%), Query Frame = 0 
Query:    8 VQSNFRASAAKQEDLFTLTALAHLLADLGQNDEAALYFEKALKCPRHAPTGGSSPCDSETRGLAMGWYAALVEANGSEGAAKAEGLYRAALRLNERDPLAMGNYAVFLHRIKRD 121
            +++ F A   +QED+F+L+A A +L   G  D A  +F+KA+     A      P   ET  L +GWYA LVE  G  GAA+AE LYR ALRL  RDPL+MGNYAVFLHRIKRD
Sbjct:   30 LRAPFDARLQQQEDVFSLSAYAQVLLATGDIDGAECHFKKAIDAGEDA-----GPEAEETLCLTLGWYAGLVEGRGKTGAAQAEALYRRALRLRPRDPLSMGNYAVFLHRIKRD 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1525.3732.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G753_ECTSI1.800e-16571.40Tetratricopeptide domain-containing protein n=1 Ta... [more]
A0A835YUW1_9STRA1.960e-2051.75Tetratricopeptide domain-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 120..152
e-value: 180.0
score: 6.3
coord: 264..297
e-value: 18.0
score: 13.6
coord: 155..187
e-value: 370.0
score: 3.9
coord: 464..496
e-value: 830.0
score: 1.4
coord: 301..336
e-value: 340.0
score: 4.2
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 141..174
e-value: 24.0
score: 11.6
coord: 284..320
e-value: 13.0
score: 13.9
coord: 22..55
e-value: 14.0
score: 13.7
coord: 249..283
e-value: 220.0
score: 3.2
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 26..50
e-value: 0.0054
score: 16.8
coord: 250..283
e-value: 0.017
score: 15.3
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 141..174
score: 7.552
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 250..283
score: 6.107
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 287..320
score: 8.29
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 22..55
score: 6.461
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 147..225
e-value: 1.8E-9
score: 39.3
coord: 226..295
e-value: 2.0E-10
score: 42.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 382..515
e-value: 3.5E-10
score: 41.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 12..141
e-value: 4.8E-11
score: 44.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 296..372
e-value: 1.4E-12
score: 49.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 334..489
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 19..194
NoneNo IPR availablePFAMPF13432TPR_16coord: 88..139
e-value: 0.0032
score: 18.1
coord: 299..354
e-value: 1.3E-4
score: 22.5
coord: 155..204
e-value: 2.7E-5
score: 24.7
coord: 390..438
e-value: 0.0014
score: 19.2
NoneNo IPR availablePANTHERPTHR26312FAMILY NOT NAMEDcoord: 85..179
coord: 205..331
coord: 299..403
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 148..363
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 22..55
score: 7.037
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 89..355
score: 29.27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1525contigL-elsbetiae_contig1525:13354..18127 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1525.3732.1mRNA_L-elsbetiae_contig1525.3732.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1525 13354..18127 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1525.3732.1 ID=prot_L-elsbetiae_contig1525.3732.1|Name=mRNA_L-elsbetiae_contig1525.3732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=527bp
MDKSVDIVQSNFRASAAKQEDLFTLTALAHLLADLGQNDEAALYFEKALK
CPRHAPTGGSSPCDSETRGLAMGWYAALVEANGSEGAAKAEGLYRAALRL
NERDPLAMGNYAVFLHRIKRDHRAAAAAYKEAVKAHPTHSSILCKYGGFA
KHVENDYDKARRLFEAAIETNPSHAESLGNLAVLLHGQPHTSAAVLDKIE
GLYKRAVHADPANANNFSNFGLFLAEKRADVVGAEALYKKAGTVDPCHAN
SIYNYAVLLDSSLKQQERAEAVYRRCLAVNPEHGYALYNLAVLKEETTKN
GDYSEAKQLFERAVRASPSDALTRADYGRFLALVEKNLDGALENLREAIR
CDPDCTTAQFNLGKLLLRRRHTEPPRGGSTVSARGETAGGNVREAKDLLQ
KVIRDNKEHSGARLCLAQALAEEGGFEGAAKLCKSALKGGTTCTDVDAMS
HLASLLGKRGMSDTVIQTADDLLRRATALSPTNERLLRQQLLFLEDVKKD
KRRSETVATALKKCLLLAGYRNPTGSS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom