mRNA_L-elsbetiae_contig15220.3724.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15220.3724.1
Unique NamemRNA_L-elsbetiae_contig15220.3724.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15220.3724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15220contigL-elsbetiae_contig15220:494..3387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1512
Cds size588
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15220.3724.1prot_L-elsbetiae_contig15220.3724.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15220 494..2464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.800429-CDS-L-elsbetiae_contig15220:493..5761622815619.800429-CDS-L-elsbetiae_contig15220:493..576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 494..576 +
1691682995.427227-CDS-L-elsbetiae_contig15220:493..5761691682995.427227-CDS-L-elsbetiae_contig15220:493..576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 494..576 +
1622815619.8123665-CDS-L-elsbetiae_contig15220:802..9051622815619.8123665-CDS-L-elsbetiae_contig15220:802..905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 803..905 +
1691682995.4367998-CDS-L-elsbetiae_contig15220:802..9051691682995.4367998-CDS-L-elsbetiae_contig15220:802..905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 803..905 +
1622815619.8232484-CDS-L-elsbetiae_contig15220:1593..16341622815619.8232484-CDS-L-elsbetiae_contig15220:1593..1634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 1594..1634 +
1691682995.4453082-CDS-L-elsbetiae_contig15220:1593..16341691682995.4453082-CDS-L-elsbetiae_contig15220:1593..1634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 1594..1634 +
1622815619.8367865-CDS-L-elsbetiae_contig15220:1853..20161622815619.8367865-CDS-L-elsbetiae_contig15220:1853..2016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 1854..2016 +
1691682995.4540048-CDS-L-elsbetiae_contig15220:1853..20161691682995.4540048-CDS-L-elsbetiae_contig15220:1853..2016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 1854..2016 +
1622815619.8519819-CDS-L-elsbetiae_contig15220:2266..24641622815619.8519819-CDS-L-elsbetiae_contig15220:2266..2464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 2267..2464 +
1691682995.4629889-CDS-L-elsbetiae_contig15220:2266..24641691682995.4629889-CDS-L-elsbetiae_contig15220:2266..2464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15220 2267..2464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.8634498-UTR-L-elsbetiae_contig15220:2464..33871622815619.8634498-UTR-L-elsbetiae_contig15220:2464..3387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15220 2465..3387 +
1691682995.472435-UTR-L-elsbetiae_contig15220:2464..33871691682995.472435-UTR-L-elsbetiae_contig15220:2464..3387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15220 2465..3387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15220.3724.1

>prot_L-elsbetiae_contig15220.3724.1 ID=prot_L-elsbetiae_contig15220.3724.1|Name=mRNA_L-elsbetiae_contig15220.3724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
RLKKTKLGGGRLCWIDPVTQTRSSERCGASTVGDGKAKARLADAVLKAKR
SGKHRFQKKKKREVSSARPERPRHCSVCKGSECDDTCLDCGKCSRVFHRD
CLASGTDTENGASGSWHCPVCTGAIRFFMLPADDRVVIQGLCSLSAPAEQ
RSGTSHRINKPGKARLSSASSSAAAGNLAAALGAALPTGRPKPRS*
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mRNA from alignment at L-elsbetiae_contig15220:494..3387+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15220.3724.1 ID=mRNA_L-elsbetiae_contig15220.3724.1|Name=mRNA_L-elsbetiae_contig15220.3724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2894bp|location=Sequence derived from alignment at L-elsbetiae_contig15220:494..3387+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCTGAAGAAGACGAAGCTTGGAGGGGGCCGCCTCTGCTGGATCGATCC
AGTGACACAGACTCGTAGCTCCGAACGCTGTGGGTGAGTTGATTGGTTTC
CTCCTTATGCTGCCGTTCTCTCGCCCATGATGGCGCGTCCACAGTTTTTT
GGGGGGTTTGAATTGTCTCAGTTTTACAGTACTGCACTGTTGTACTCGAC
AGTAGGCAGGGTAGGGCAGGGCAGGTGTGCTCCTGTGCCAGAGGTCACGC
AGCATGATGACAGTAGTTGCTCTTGGTGGCCCATGAACCGCGCCTCTCTG
CACGAACAGGGCGAGTACTGTTGGTGACGGGAAAGCTAAGGCGCGGCTGG
CGGACGCGGTCTTGAAGGCCAAGAGGTCGGGCAAACACCGATTCCAGAAG
AAGAAGAAAAGGGTAAGCAAGATCGATACAGCGGTGTTGACCTACCGCCA
CATACGGTAGACCAGCAGCAATATAATGCATTATATTTTCACTGGATAGT
ATGCATTCGTCGGAATCTCTGCGGGTTCTCATTTGGGCTCTTCACAGAGC
AGCAAGCTTATTCACTTGGTTTTAGAGTGCATTCGAGCCACTGAAAAAGC
TGTCGTGCTCTTTGAGTTTTTTTTTTCTTTTTTTCTGAGTGAGAGCTGTA
TTTCATGTTCGCATTTTCGGCGCCAAGTGGCCACACCGGTCCGGTTTGCG
CTCTCCGCTTCGAGTCTTTGGCTATCTACCTCTGTCCCTCTCTGCATCTC
GCTTTTTTTTATCTGTTTTCGCTCTCCTCCGTGCGTGGTGGGTTCCTACC
TACCTGCATTGGCTTGTGTGCTCGCTCCTGTATATCTTTCGCTCTCTCTT
CGCAACGGACTTCTATTGGATTTTTGGATTTATTTGTGACTCTGTATATA
GTGTCAGGGCGAGTCTCTCTCTTCCCCTCTTCTCTCTTTATATGTCTCTA
CTCTGTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTTCAGCTCT
GTCTCTGTGAGTCCCTCGCTTGTCTGTGGATAAACGTCGTGGCCCTCAAT
TCATCGCTGACTGACTTTTTTTCCCGTCTTTCGACTACATACATACACAG
GAGGTGTCCAGCGCCAGACCGGAACGGCCGCGTCACTGCAGGTAATAAGT
TACTGGTGCTAAAGTAGGGCAATGCACGCCGGGTGGGCACCAGGAGCAAG
ATATGGTATTGACCGTCTCGTTGTGGTGCGCTCTACATTTGTAAGCTCAG
TAAGAGAGGCTTGTGAACTCGTATTCAACTAGTCCAAATCGTCGCAATCG
GCCAGCCGCACCCCTCCCCTCGACGTTGCGCTTTCTCGCGTGTTGCTTGC
TGCCGACCAGCGTGTGCAAAGGCTCCGAGTGCGACGACACCTGCCTTGAC
TGTGGGAAATGCTCGCGCGTGTTCCACCGGGACTGCCTGGCTTCTGGTAC
AGACACGGAGAACGGAGCGTCTGGCTCCTGGCACTGCCCGGTGTGTACCG
GTGCAATCCGGTTCTTCATGCTGGTGAGTTGATCTACATTTTATACATAT
GTCCTATTTACTAGGAGTACTTCGTACCCCCTTCGTATGTAGGAATCAAC
CCCATGAGCCCTTCGACTGTTTGATTTCTGAGCGAGTCGTGTCGCGTATC
ACACGTGTTTCCATGTTCAACCACAACTAACTGGTGCTGGTAGATCAGCC
TCCGACGGCGCAGGAAGAGTAATCGATCCCCCCCCCTGTGTTTTGTTTGT
TGTGGCTGAAATGACACGTTTAGCCGGCCGACGACCGCGTCGTAATCCAG
GGGCTTTGCAGCCTCTCCGCGCCTGCGGAGCAGAGGAGTGGCACCAGCCA
CCGCATCAACAAGCCGGGCAAGGCGCGTCTGTCCTCCGCGTCCTCTTCTG
CGGCCGCGGGCAACTTGGCCGCAGCCCTGGGCGCGGCCCTCCCCACCGGT
CGGCCCAAGCCGCGCTCGTAGGCTCGGGTGCCAACGCGAGCGGGCTAATT
TCGTCGTATCTACGACGTGATTAAGAGCGCACCCCGACAGTTTGCGTTAA
AGGTCATCCACGCGGGTTGCTTCATTTGGCTTTTCAACTGCCAAACACGA
AAGAAAGCAGTCGATTTTTTTTTTCCTCCTGGGGGGGGAGGAAAAAGGGG
GGGTAGGTATGTAGGTGTGTGGGACAACCTTTTTTTGTGCGCACCCTTGG
GCGGTAAATTTAGTTTCTTTTTTCGATTTTATGTAGCCCGAGGGGGCACG
ATGTAAGTATATGTGGAGTTTTATTTTATTATTTATTTTCTGGTTTGGGG
GAGGTATTTATGTATATACATTATACTTCTATATATCTACGAGAGTGTAG
GACTATGTACAAGTGCCGTCAGGGAACTTCTGTTCCGATTCTGAATCTAG
TGGGCTGTCGGCTTCCAATAGCCCAGAAAAAACGTCAGTATGACAGCAGC
TGTTTTGATTGAGCACATGGCCAGCAGACTGGCAGCTATTGTACCTGATG
AGCACAGACCGGCACAGCTCTGTTTGGTTCAAGGGAGCGTCAGCACAGAA
AAGAAGCAGCTGTTTGTTTCAGTATGCACAGCAGCTGCTGCTCCGGTGCT
CAAAACACAGCAGCTGCTGTTTTTTTCAGGTGTACGGTAAATCTTAAATT
TTGGAGCACTTCTGCTGCCTTCGTCTGTTTGCTTTGGTCTTGCATCACCC
CCTGCCGCTGTGCCTCTCATGGGCTCGCTCCGAAGGGGGATCTTGTGTAT
ATATATCTATTAGGTGTATTCTTATTGTATCCTTTATTTACTTTTATTAG
TTTTGGGGTTTGAGGAGGGAATCTTCGATTGTAGGCCGGATCTTATGGCA
ACAAAAAATATTTTCTTGTCCGTGGCTCCCCCTTTGGAAGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15220:494..3387+

>mRNA_L-elsbetiae_contig15220.3724.1 ID=mRNA_L-elsbetiae_contig15220.3724.1|Name=mRNA_L-elsbetiae_contig15220.3724.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig15220:494..3387+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCTGAAGAAGACGAAGCTTGGAGGGGGCCGCCTCTGCTGGATCGATCC
AGTGACACAGACTCGTAGCTCCGAACGCTGTGGCGGCTGAAGAAGACGAA
GCTTGGAGGGGGCCGCCTCTGCTGGATCGATCCAGTGACACAGACTCGTA
GCTCCGAACGCTGTGGGGCGAGTACTGTTGGTGACGGGAAAGCTAAGGCG
CGGCTGGCGGACGCGGTCTTGAAGGCCAAGAGGTCGGGCAAACACCGATT
CCAGAAGAAGAAGAAAAGGGGCGAGTACTGTTGGTGACGGGAAAGCTAAG
GCGCGGCTGGCGGACGCGGTCTTGAAGGCCAAGAGGTCGGGCAAACACCG
ATTCCAGAAGAAGAAGAAAAGGGAGGTGTCCAGCGCCAGACCGGAACGGC
CGCGTCACTGCAGGAGGTGTCCAGCGCCAGACCGGAACGGCCGCGTCACT
GCAGCGTGTGCAAAGGCTCCGAGTGCGACGACACCTGCCTTGACTGTGGG
AAATGCTCGCGCGTGTTCCACCGGGACTGCCTGGCTTCTGGTACAGACAC
GGAGAACGGAGCGTCTGGCTCCTGGCACTGCCCGGTGTGTACCGGTGCAA
TCCGGTTCTTCATGCTGCGTGTGCAAAGGCTCCGAGTGCGACGACACCTG
CCTTGACTGTGGGAAATGCTCGCGCGTGTTCCACCGGGACTGCCTGGCTT
CTGGTACAGACACGGAGAACGGAGCGTCTGGCTCCTGGCACTGCCCGGTG
TGTACCGGTGCAATCCGGTTCTTCATGCTGCCGGCCGACGACCGCGTCGT
AATCCAGGGGCTTTGCAGCCTCTCCGCGCCTGCGGAGCAGAGGAGTGGCA
CCAGCCACCGCATCAACAAGCCGGGCAAGGCGCGTCTGTCCTCCGCGTCC
TCTTCTGCGGCCGCGGGCAACTTGGCCGCAGCCCTGGGCGCGGCCCTCCC
CACCGGTCGGCCCAAGCCGCGCTCGTAGCCGGCCGACGACCGCGTCGTAA
TCCAGGGGCTTTGCAGCCTCTCCGCGCCTGCGGAGCAGAGGAGTGGCACC
AGCCACCGCATCAACAAGCCGGGCAAGGCGCGTCTGTCCTCCGCGTCCTC
TTCTGCGGCCGCGGGCAACTTGGCCGCAGCCCTGGGCGCGGCCCTCCCCA
CCGGTCGGCCCAAGCCGCGCTCGTAG
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