mRNA_L-elsbetiae_contig152.3708.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig152.3708.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI) HSP 1 Score: 413 bits (1062), Expect = 3.610e-125 Identity = 285/559 (50.98%), Postives = 344/559 (61.54%), Query Frame = 1 Query: 1 GGESSQGVTLEIQSVFEARRR--ALTAEVS-DHTLERRALSVVFAEDADEYDDVMAGVCASLLGVGKQNVISVSTDFGPDGPLEDAFGRGSMASSGSSQDEGATATQLTPITTCEVDLSGGSGESRAMSAAILVDRMLQPENFVLTVDENSFGPVNAVVSSVSFWQNECRDQTCPATGDGSFASVYPVSGDGAENQRSVAGDDGSGEEQRLFWFVVIAAGLLMAMVFSWCCFCVFCARSPKRERKPKLTIEDKYSVKSP--SKEGPATAVA-LSPPRRQQSAEPPSPTND--TPSGSLPGASPTTPPPRSRPRSHANGKRRTPPPPLSTSPGAGISAAGGNAAAGLAEPPSPGEADWRNKFGLGPLRDYTYRSAPVSPRRTPPSNSAGSTGLSSRGDPFCTTYRDNVVAAADG----KLRLPPLMDDASAAMESQSAWQTTDEMNASVQHTNDPVVRSSLGKAGMVIANALSSPRRELNRLKEALNRPSRDLHQSFASTSPTVAASS------------EGGFSPHVSLSTAGHGNSGHFNS-VSSTIYEIDLEADESG 1602 G ESS+G+TLEIQS+FEARRR AL++EVS D + ERRALSVV+ EDA+ YD+ M VCA ++GV ++ VISV T FGPDG EDA RG M SS SS DE ATQLTP+TTCEVDLSG G++R+M+AA +VDR++QPENFVL +DEN FGPVN VV+S P + RK K ++YSVKSP +K+G +A LSP R ++SA SP D +PS PG SP PP++ +G++RTPPP LSTSPG G EPPSPGEADWR+KFGLGPLRDYTYRSAP+SPRR+P S + S S G+PF T+Y+D+VVAAADG K+ L PL DDASAAMESQ W +DE++ASVQH NDPVVRSSL KAG VIANA++SPR+ELNRLKEALNRPSR Q+ STSPTV ASS EGGFSP + + G +SG+ N+ SS IYEIDLEADE+G Sbjct: 708 GNESSRGITLEIQSIFEARRRRRALSSEVSHDGSSERRALSVVYEEDAEAYDETMVDVCAYMVGVDRERVISVWTSFGPDGAAEDAARRGLMTSS-SSSDEAIMATQLTPVTTCEVDLSG-EGDTRSMAAATMVDRLMQPENFVLAMDENQFGPVNVVVTS-----------------------------------------------------------------------------GPTKWRKSKPAESERYSVKSPPNTKDGGGAGLAVLSPQRYERSATATSPIPDGSSPSCLSPGRSPV--PPQAXXXPKHSGRKRTPPPRLSTSPGRGGDVP--------VEPPSPGEADWRHKFGLGPLRDYTYRSAPISPRRSPLSVGSAS---QSAGEPFYTSYQDHVVAAADGSMGGKVGLTPLADDASAAMESQVHWHVSDEVDASVQHNNDPVVRSSLAKAGTVIANAITSPRKELNRLKEALNRPSR--LQACHSTSPTVTASSADPSSMPGFFGSEGGFSPGGNNNAFGGSSSGNLNARASSPIYEIDLEADENG 1172
BLAST of mRNA_L-elsbetiae_contig152.3708.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE) HSP 1 Score: 334 bits (857), Expect = 1.370e-98 Identity = 228/434 (52.53%), Postives = 277/434 (63.82%), Query Frame = 1 Query: 373 MSAAILVDRMLQPENFVLTVDENSFGPVNAVVSSVSFWQNECRDQTCPATGDGSFASVYPVSGDGAENQRSVAGDDGSGE-EQRLFWFVVIAAGLLMAMVFSWCCFCVFCARSPKRERKPKLTIEDKYSVKSP--SKEGPATAVA-LSPPRRQQSAEPPSPTND--TPSGSLPGASPTTPPPRSRPRSHANGKRRTPPPPLSTSPGAGISAAGGNAAAGLAEPPSPGEADWRNKFGLGPLRDYTYRSAPVSPRRTPPSNSAGSTGLSSRGDPFCTTYRDNVVAAADG----KLRLPPLMDDASAAMESQSAWQTTDEMNASVQHTNDPVVRSSLGKAGMVIANALSSPRRELNRLKEALNRPSRDLHQSFASTSPTVAASS------------EGGFSPHVSLSTAGHGNSGH-FNS-VSSTIYEIDLEADESG 1602 M+AA +VDR++QPENFVL +DEN FGPVN VV+S NECRDQTCPA GDGS+ASVYP++ + +Q SV G+D + + E +L WF VIA L + V SWC C+ C P + RKPK ++YSVKSP +K+G +A LSP Q+SA SP D +PS PG SP +G++RTPPP LSTSPG G EPPSPGEADWR+KFGLGPLRD+TYRSAP+SPRR+P S GS S+ G PF T+Y+D+VVAAADG K+ L PL DDASAAMESQ W +DE++ASVQH NDPVVRSSL KAG VIANA++SPR+ + STSPTV ASS EGGFSP + +T G +S H FN+ SS IYEIDLEADE+G Sbjct: 1 MAAATMVDRLMQPENFVLAMDENQFGPVNVVVTS-----NECRDQTCPA-GDGSYASVYPIA-ETPSSQSSVVGEDTTPDNELKLLWFAVIAGALFLLAVLSWCVVCLCCG-GPTKWRKPKPAESERYSVKSPPNTKDGGGAGLAVLSPQGNQRSATATSPIPDGSSPSCMSPGRSPVX--XXXXXXXXHSGRKRTPPPRLSTSPGRGRDVP--------VEPPSPGEADWRHKFGLGPLRDHTYRSAPISPRRSP--LSVGSASRSA-GGPFYTSYQDHVVAAADGNMGGKVGLTPLADDASAAMESQVHWHVSDEVDASVQHNNDPVVRSSLAKAGTVIANAITSPRKACH------------------STSPTVTASSADPSSMPGFFGSEGGFSPGGNNNTFGGSSSSHNFNARASSPIYEIDLEADENG 395 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig152.3708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig152.3708.1 >prot_L-elsbetiae_contig152.3708.1 ID=prot_L-elsbetiae_contig152.3708.1|Name=mRNA_L-elsbetiae_contig152.3708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=534bp GGESSQGVTLEIQSVFEARRRALTAEVSDHTLERRALSVVFAEDADEYDDback to top mRNA from alignment at L-elsbetiae_contig152:14415..23074- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig152.3708.1 ID=mRNA_L-elsbetiae_contig152.3708.1|Name=mRNA_L-elsbetiae_contig152.3708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8660bp|location=Sequence derived from alignment at L-elsbetiae_contig152:14415..23074- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig152:14415..23074- >mRNA_L-elsbetiae_contig152.3708.1 ID=mRNA_L-elsbetiae_contig152.3708.1|Name=mRNA_L-elsbetiae_contig152.3708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3204bp|location=Sequence derived from alignment at L-elsbetiae_contig152:14415..23074- (Laminarionema elsbetiae ELsaHSoW15)back to top |