mRNA_L-elsbetiae_contig152.3705.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig152.3705.1
Unique NamemRNA_L-elsbetiae_contig152.3705.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig152.3705.1 vs. uniprot
Match: A0A6H5JEE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE7_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.720e-25
Identity = 78/152 (51.32%), Postives = 99/152 (65.13%), Query Frame = 2 
Query:   38 AELFKLPDRLVSAELPALVVLAGETDDISNTERKAFSRSTMNLQSPGPGSPKAFDPDATPMPGMPVKPPSPTHSAVS-AMKTPSTMTNPCRISDASPMYDRAAIARAMSQAAEEADIDGENDMVLPAGAWPSERRMNSYNGSS-SVISDMTS 487
            A L + P +  +A  P LV+ A E D      +  FSR+ MNLQSPGP SPKA   + T MP +P+ PPSP+    S  ++TP T  NP  ISDASPMYDR AIARAM+QA +E D  G++D+V+    WPSERR+NSY  SS S +S+MTS
Sbjct: 1156 AMLLQEPAQGPAAHTPTLVIQAEEADASLKPGQTPFSRAAMNLQSPGPDSPKALQ-EVT-MPALPM-PPSPSMPKASMTLQTPKTAVNPRHISDASPMYDREAIARAMAQADQEQD--GDSDIVVSRVEWPSERRINSYTDSSVSGMSEMTS 1302
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BLAST of mRNA_L-elsbetiae_contig152.3705.1 vs. uniprot
Match: D7FLC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC6_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.200e-23
Identity = 71/151 (47.02%), Postives = 91/151 (60.26%), Query Frame = 2 
Query:   38 AELFKLPDRLVSAELPALVVLAGETDDISNTERKAFSRSTMNLQSPGPGSPKAFDPDATPMPGMPVKPPSPTHSAVSAMKTPSTMTNPCRISDASPMYDRAAIARAMSQAAEEADIDGENDMVLPAGAWPSERRMNSYNGSS-SVISDMTS 487
            A L + P +  +A+ P LV+   E D      +  FSR+ MNLQSPGP SP+A      PMP +P+        A   ++TP T  N   ISDASPMYDR  IARAM+QA EE D  G++D+V+    WPSERR+NSY  SS S +S+MTS
Sbjct: 1777 AMLLQEPAQGPAADTPTLVIQTEEADASLKPGQTPFSRAAMNLQSPGPDSPRALQ--GVPMPALPMPXXXXXXKAPMTLQTPKTAVNSRHISDASPMYDRETIARAMAQADEEQD--GDSDIVVSRVEWPSERRINSYTDSSVSGMSEMTS 1923
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig152.3705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEE7_9PHAE5.720e-2551.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLC6_ECTSI3.200e-2347.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig152contigL-elsbetiae_contig152:9536..12149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size739
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig152.3705.1prot_L-elsbetiae_contig152.3705.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig152 9656..10868 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.2311757-UTR-L-elsbetiae_contig152:9535..96551622815618.2311757-UTR-L-elsbetiae_contig152:9535..9655Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 9536..9655 -
1691682994.4239647-UTR-L-elsbetiae_contig152:9535..96551691682994.4239647-UTR-L-elsbetiae_contig152:9535..9655Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 9536..9655 -
1622815618.2672067-UTR-L-elsbetiae_contig152:10868..109121622815618.2672067-UTR-L-elsbetiae_contig152:10868..10912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 10869..10912 -
1691682994.448949-UTR-L-elsbetiae_contig152:10868..109121691682994.448949-UTR-L-elsbetiae_contig152:10868..10912Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 10869..10912 -
1622815618.2794402-UTR-L-elsbetiae_contig152:12036..121491622815618.2794402-UTR-L-elsbetiae_contig152:12036..12149Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 12037..12149 -
1691682994.4569561-UTR-L-elsbetiae_contig152:12036..121491691682994.4569561-UTR-L-elsbetiae_contig152:12036..12149Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig152 12037..12149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.2424223-CDS-L-elsbetiae_contig152:9655..99161622815618.2424223-CDS-L-elsbetiae_contig152:9655..9916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 9656..9916 -
1691682994.4328327-CDS-L-elsbetiae_contig152:9655..99161691682994.4328327-CDS-L-elsbetiae_contig152:9655..9916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 9656..9916 -
1622815618.254965-CDS-L-elsbetiae_contig152:10667..108681622815618.254965-CDS-L-elsbetiae_contig152:10667..10868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 10668..10868 -
1691682994.440966-CDS-L-elsbetiae_contig152:10667..108681691682994.440966-CDS-L-elsbetiae_contig152:10667..10868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig152 10668..10868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig152.3705.1

>prot_L-elsbetiae_contig152.3705.1 ID=prot_L-elsbetiae_contig152.3705.1|Name=mRNA_L-elsbetiae_contig152.3705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MNLQSPGPGSPKAFDPDATPMPGMPVKPPSPTHSAVSAMKTPSTMTNPCR
ISDASPMYDRAAIARAMSQAAEEADIDGENDMVLPAGAWPSERRMNSYNG
SSSVISDMTSSSGGSGVGTSSGSSSSSGGGGGGSGGSSNGHCSSGSDASD
RKF*
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mRNA from alignment at L-elsbetiae_contig152:9536..12149-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig152.3705.1 ID=mRNA_L-elsbetiae_contig152.3705.1|Name=mRNA_L-elsbetiae_contig152.3705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2614bp|location=Sequence derived from alignment at L-elsbetiae_contig152:9536..12149- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGATGGGGGAGATGAGGAGGGCGCTGATGAGGCGGCGGAATTATTCA
AGCTTCCGGATCGCCTGGTCTCTGCTGAGCTCCCCGCGCTGGTGGTCCTT
GCTGGCGAGACCGGTGAGACGCTTGTCTAATTGCTGTTGCTGCTGTTGCT
GCTGTTGTTATTGACGATAGCTCCGTTGGGTGATTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTCGTTTTCTTCACATTAGCTCGTAGAAGCGAGAT
TGCTAATCCCAGAAATCTGTTGATAGCTCCGTTGGGTGATTGTTGTTGTT
GTTGTTGTTGTTGTTCTCTTCACATTAGCTCGTAGAAGCGAGATTACTAA
TGCCAGAAATCTGTTGAGCAACTCACTACCCGTCCGTGGAGCCATCAAGA
AGGATCCTTAGAAAAGAAACACACGCAGAAAGCGAAAAGGTACACCAAGG
GACCCAAGAGGTACACCCAATTTACGGCAACGTCGATGTCCAGTTGTGGG
TGCCCCGTGGAGAAAACGCGGCCGAAGGTGGAGGTGCCTGCGTGTGTGGT
TTGTATATACGTACACGGATGGATTGGATCATTGGTCAGGGTAGCATGGG
GCAAGTCGCCGCTTTGCGGCGTAGGGGGTAGGTGCACCCTCTCTTTTTGT
TTGGTGCTGAAAGAGGAAAAAGTCCCTGTCAGCAAAGTAAGTACCTTCGG
ATTCTTAAGGGCGGGCTTCGAGAGACCGACCAGCACGCTGCAGGCAGCAA
GCAGCGCCGCGTTCGCTGTGCCGTGTGGGGTGGTGCCCTCGAAGCCTGAG
TTTGGATCGATCCCCGCGTTGGCCAGCAGATGACGTGGCGCCAACATTCG
CATTCGGCGGGTTGTTGGTGGTTTTAGCATGTGCGGTGGCGATCAGATTG
CATCTTGTCGTATTTCCCCACACCGTTGACCACGGGAATCGATCGCGTCA
AGTGTTTTGGATCAGTACGGACAGATAGGCTTCGTGCAATAGAGCCAGCC
CCCACTTCTAAAAAAAGAGCTGTCGGGGTGGCAGTGGGGGGGGGGGGTTA
TTTATCTAGGAAATAGGGTGAAAAATCACTTCTTCAGAATTGGGGGCGCT
GCCTGCTGCACGAAGCCTATGGAGGTACCGGACAGAGAAATCATAACGTT
TTTATTTATATATTTTAGACGACAAAACAACAAACAACAGCTCTCCCCCC
CCCCGTCCGTCTCCCCTCGTGATTCTCGACATGTAAGATGATATTTCGAA
CACCGAGAGGAAGGCCTTCTCGAGGTCCACCATGAATCTGCAGAGCCCCG
GCCCCGGTTCTCCCAAGGCCTTCGATCCCGACGCGACTCCGATGCCCGGC
ATGCCCGTGAAGCCTCCGTCCCCGACGCACTCGGCGGTGTCCGCCATGAA
GACGCCGTCTACGATGACGAACCCGTGCCGTATCTCCGACGCCTCGCCGA
TGTACGACAGGGCCGCGATCGCTCGGGCGATGGTAAGCACAGACGCGACG
AGAGCCATCGCGTAGGGAGATACACAAAGAGAGAGACAGACAGGCAGACA
GATAGGGAGACAAAGAGACAGAGAGATAAGTACCGTAATCATGCGAAGGT
TCGCACCCCCGTGTTAGCATTTTTCTGAAGCGTATTTCTCCACAACCAGG
AAGGTGCGAACACTAACTGACACCTCTCTGGAAAGCCCCCGACTAGACGT
TTCGAAAACCACCCTTTTCGGCAGCGGCACCCTCCTGGTTGCGGAGAGAT
ACGCTATAGAAAAACGCTAACACGGGGGTGCAAACTTTCGCATGATTACG
GTAGTCTGTCTCCCCTCCGCTCGTGTTAACATATAGTAGGTACTAGGCTT
GCTGTCAGCGCTTATCTTTGCTACAGAGAGCCGCTGCTGTGTATCTGGCC
AACTCGACGTTTCGACAGCAGGCGAAGGTTTCCATGTTTTTATTTTTATT
TTTATCTTATGAATGTTTCGAACCCTCTGCTTCCGCCCAGAACAAACCAA
CCCCTCCCACGTTTCGCTCGCCTTAAGCGCCAACCAACGCCAATGCCAAT
GCCACGCCCGTGTCGCATCCAATGAATGTTTAATTTCATGTTTAAAAAAA
AAAAACTGCAGTCTCACGCCCGTGTCGCATCCAATGAGTGTTTCATTTCA
TGTTCAAAAAAAAAAAGTGCAGTCTCACGCCCGTGTCGCATCCAACGAAT
GTTTAATTTCATGTTTAAAAAAAAAAACTTCAGTCTCAGGCGGCGGAGGA
GGCCGATATCGACGGGGAAAACGACATGGTGCTGCCAGCCGGGGCCTGGC
CAAGCGAGAGGAGGATGAACTCCTACAACGGCAGCAGCAGCGTCATCAGT
GACATGACGAGCAGCAGCGGGGGCAGCGGCGTTGGAACCAGCAGCGGCAG
CAGCAGCAGCAGTGGTGGTGGTGGTGGTGGCAGTGGTGGCAGCAGCAACG
GCCACTGCAGCAGCGGCAGTGATGCCAGCGATCGCAAGTTCTGAGACGTT
CGGGGCTGATTGGTTTGAGAGGGGGGGGGCGACGACCGCAAGTTCTGAGA
CGTTTGGGGTTGGTTGATCGATCTGAGGGGGTGAATCCAAGTCTGCCGTG
TTGGGGAAAGGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig152:9536..12149-

>mRNA_L-elsbetiae_contig152.3705.1 ID=mRNA_L-elsbetiae_contig152.3705.1|Name=mRNA_L-elsbetiae_contig152.3705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig152:9536..12149- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCTGCAGAGCCCCGGCCCCGGTTCTCCCAAGGCCTTCGATCCCGA
CGCGACTCCGATGCCCGGCATGCCCGTGAAGCCTCCGTCCCCGACGCACT
CGGCGGTGTCCGCCATGAAGACGCCGTCTACGATGACGAACCCGTGCCGT
ATCTCCGACGCCTCGCCGATGTACGACAGGGCCGCGATCGCTCGGGCGAT
GATGAATCTGCAGAGCCCCGGCCCCGGTTCTCCCAAGGCCTTCGATCCCG
ACGCGACTCCGATGCCCGGCATGCCCGTGAAGCCTCCGTCCCCGACGCAC
TCGGCGGTGTCCGCCATGAAGACGCCGTCTACGATGACGAACCCGTGCCG
TATCTCCGACGCCTCGCCGATGTACGACAGGGCCGCGATCGCTCGGGCGA
TGTCTCAGGCGGCGGAGGAGGCCGATATCGACGGGGAAAACGACATGGTG
CTGCCAGCCGGGGCCTGGCCAAGCGAGAGGAGGATGAACTCCTACAACGG
CAGCAGCAGCGTCATCAGTGACATGACGAGCAGCAGCGGGGGCAGCGGCG
TTGGAACCAGCAGCGGCAGCAGCAGCAGCAGTGGTGGTGGTGGTGGTGGC
AGTGGTGGCAGCAGCAACGGCCACTGCAGCAGCGGCAGTGATGCCAGCGA
TCGCAAGTTCTGATCTCAGGCGGCGGAGGAGGCCGATATCGACGGGGAAA
ACGACATGGTGCTGCCAGCCGGGGCCTGGCCAAGCGAGAGGAGGATGAAC
TCCTACAACGGCAGCAGCAGCGTCATCAGTGACATGACGAGCAGCAGCGG
GGGCAGCGGCGTTGGAACCAGCAGCGGCAGCAGCAGCAGCAGTGGTGGTG
GTGGTGGTGGCAGTGGTGGCAGCAGCAACGGCCACTGCAGCAGCGGCAGT
GATGCCAGCGATCGCAAGTTCTGA
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