mRNA_L-elsbetiae_contig1515.3684.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1515.3684.1
Unique NamemRNA_L-elsbetiae_contig1515.3684.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1515.3684.1 vs. uniprot
Match: D8LU64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU64_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.590e-10
Identity = 43/91 (47.25%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:  622 SSLARLMRQGGAGKREAPGFDAAVTASANEGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDNSS---DGGAAHEDLSAWLHSTDDWWTS 885
            +S +RLM+QGG   +EAPGFDAAV ASA    G                            DD+     DGGAAHEDLSAWLHST DWWTS
Sbjct:   54 ASFSRLMQQGGG--KEAPGFDAAVRASAASSDGNTGGVEVAAVADAVDAG-----------DDDKXXXXDGGAAHEDLSAWLHSTHDWWTS 131
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BLAST of mRNA_L-elsbetiae_contig1515.3684.1 vs. uniprot
Match: A0A6H5KGC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-6
Identity = 51/82 (62.20%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:  640 MRQGGAGKREAPGFDAAVTASANEGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDNSSDGGAAHEDLSAWLHSTDDWWTS 885
            M++GG   ++APGFDAAV ASA    G   XXXXXXXXX        XXXXXXX      D GAAHEDLSAWLHST DWWTS
Sbjct:    1 MQEGGG--KKAPGFDAAVRASAASSDGNARXXXXXXXXXPDAIDVGDXXXXXXX------DEGAAHEDLSAWLHSTHDWWTS 74
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1515.3684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU64_ECTSI4.590e-1047.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGC1_9PHAE2.490e-662.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1515contigL-elsbetiae_contig1515:4441..6377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_000390.1
Exons4
Model size1165
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1515.3684.1prot_L-elsbetiae_contig1515.3684.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1515 4441..6100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.6225748-CDS-L-elsbetiae_contig1515:4440..48051622815616.6225748-CDS-L-elsbetiae_contig1515:4440..4805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 4441..4805 +
1691682993.492309-CDS-L-elsbetiae_contig1515:4440..48051691682993.492309-CDS-L-elsbetiae_contig1515:4440..4805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 4441..4805 +
1622815616.63364-CDS-L-elsbetiae_contig1515:5430..55661622815616.63364-CDS-L-elsbetiae_contig1515:5430..5566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 5431..5566 +
1691682993.5044622-CDS-L-elsbetiae_contig1515:5430..55661691682993.5044622-CDS-L-elsbetiae_contig1515:5430..5566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 5431..5566 +
1622815616.6442544-CDS-L-elsbetiae_contig1515:5668..58691622815616.6442544-CDS-L-elsbetiae_contig1515:5668..5869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 5669..5869 +
1691682993.5122867-CDS-L-elsbetiae_contig1515:5668..58691691682993.5122867-CDS-L-elsbetiae_contig1515:5668..5869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 5669..5869 +
1622815616.6602635-CDS-L-elsbetiae_contig1515:5914..61001622815616.6602635-CDS-L-elsbetiae_contig1515:5914..6100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 5915..6100 +
1691682993.5203998-CDS-L-elsbetiae_contig1515:5914..61001691682993.5203998-CDS-L-elsbetiae_contig1515:5914..6100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 5915..6100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.6784062-UTR-L-elsbetiae_contig1515:6100..63771622815616.6784062-UTR-L-elsbetiae_contig1515:6100..6377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1515 6101..6377 +
1691682993.529219-UTR-L-elsbetiae_contig1515:6100..63771691682993.529219-UTR-L-elsbetiae_contig1515:6100..6377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1515 6101..6377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1515.3684.1

>prot_L-elsbetiae_contig1515.3684.1 ID=prot_L-elsbetiae_contig1515.3684.1|Name=mRNA_L-elsbetiae_contig1515.3684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=296bp
MDTLTDGVGSLGVASPEATSNGDPPEPGGGAPRRRGHVSRRETLTGSTHG
AFLPEPARPALAIGGVGRAYPRAACASAGAQSCAMMRRQKAQSGTETGGP
GQHQSKRHRNGSLAAGASLSFRNVVKPSVLPVEDDVAGVSATPSAGAAAA
AAPAAPAPRARSHPAPRTGAAGGCGAMDVEITEGQERCCPCSSTMPPPST
PHLPRTASSLARLMRQGGAGKREAPGFDAAVTASANEGKGGATAAAAAAA
AAAAAAGAEGGPDPDEDLDDNSSDGGAAHEDLSAWLHSTDDWWTS*
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mRNA from alignment at L-elsbetiae_contig1515:4441..6377+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1515.3684.1 ID=mRNA_L-elsbetiae_contig1515.3684.1|Name=mRNA_L-elsbetiae_contig1515.3684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1937bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:4441..6377+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACACCTTGACAGACGGGGTTGGTAGTCTAGGAGTCGCCTCCCCGGA
GGCTACCAGCAACGGTGACCCGCCGGAGCCGGGGGGGGGTGCACCCAGGC
GACGAGGACACGTATCGCGGCGAGAGACACTCACCGGCTCGACGCATGGT
GCTTTCCTTCCAGAGCCTGCACGCCCTGCACTTGCTATCGGAGGGGTTGG
ACGGGCCTACCCAAGAGCAGCGTGCGCCAGTGCCGGTGCGCAGAGCTGTG
CGATGATGCGAAGGCAGAAGGCGCAGTCTGGTACGGAGACTGGCGGCCCT
GGGCAACACCAGTCGAAAAGGCACAGAAACGGCTCGCTTGCTGCAGGGGC
GTCGTTATCTTTCAGGTGAGGTTGGTCTAAGATTACTTTGTCTACATATG
CTGAAACTGCTCTCATTAAAAGTGCGTTCGTTTTAAGCTTGCGAGAAAAA
ATGTCTCAGCGTGCCGGCGAGAGCTATGTGGTGTGTCGCGCAGTCAGTCG
TGAGCGGTGTTGTTACAGATTCCCGACGAATGCCATGCCGTGGAATGCGG
CCGTTCATCTATTCGCAGTACGCGGTGCATTGTTTGATCAATCCTGTCAA
TCCCAAACGCACGAACTCCTGCTTGGCCGAATCTTTCAACAAGTTTTAAT
TTATGCACCCCTCCACACCATCAGACATACGTAAGCTTTCAGTATTCGGG
GGAAGGAGAAATAGTGCAAATATTATTGGTCACATCTCAATGAACGTGGA
AGTTTGATTCGAAGATGAGTAACTTAGCTCCGAAATTCCTTCCATGAATT
CTGCGGCAAACCCCCAACGATCGTTAGGCTCGCTGTCTGTGTGCGGTCTC
GTCAGCACGGAGTCCCTTCGGTGACATCCTTGCGTCGCGACTACGTACGT
GCTCGACGTCGACCGCACATATTCCATTTTCTCGGGAACTCCCTGCATTA
AAAAACACACGCCTTCCTCTGTGTTTGCGACACTCCGCAGGAACGTCGTC
AAACCTTCCGTACTGCCCGTCGAAGACGATGTGGCCGGTGTTTCTGCGAC
CCCGTCAGCAGGAGCGGCGGCGGCGGCGGCGCCAGCGGCGCCGGCACCCC
GAGCTCGGAGTCATCCCGCACCCCGCGTGAGCCAAGCCGACGCGGGCGAC
TCGGACGCGCAGTCGAGCCCAGACCGGCGCCTCTACACCCACCCCGGGAG
CGGCCCTCGCGCCGCCGGCAGCGGCGAGACCGGGGCAGCCGGTGGCTGCG
GTGCCATGGACGTAGAAATAACGGAAGGGCAAGAGCGCTGCTGCCCGTGC
AGCAGCACGATGCCCCCCCCCTCGACGCCGCACCTACCCCGCACCGCCTC
CTCGCTAGCAAGGCTGATGCGGCAGGGGGGCGCCGGGAAGAGGGAGGCGC
CGGGGTTCGACGCGGCGGTGACCGCTTCGGTCGCCGCCGCCGCCGCCGCC
GCCGCTGCGGCCTCTGCCACCGAGGCGAACGAAGGGAAAGGCGGGGCGAC
GGCGGCAGCAGCGGCGGCGGCGGCAGCGGCGGCGGCGGCCGGCGCGGAGG
GCGGCCCAGACCCGGACGAGGACCTGGACGACAACAGCAGCGACGGCGGG
GCGGCGCACGAAGACCTGTCGGCGTGGCTGCACAGCACGGACGACTGGTG
GACCTCGTGAGGACGGACGGCCGTCGTCACGGTGGAGAAAATGCCACCCC
CCCTGGTGCCCTTGGGTGCGGCAAGGGGGTGTACATAGCGGGCGTTCAGG
ACGTACATATATATGTAGTCACGGAGCCCCGTAGGAACGGCCCGTCGCGC
AGCGTGTTGCCCTGATTGTCTACCTGAGCATCAGCAGTAGCCCTTCGGTT
GGTGGAGTGTCGACGCACAGATCAATCTTCAACCCATGCCTGCCCTCATA
AAGATAAACTGGACAGCGTGTTGGGGAGACATGTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1515:4441..6377+

>mRNA_L-elsbetiae_contig1515.3684.1 ID=mRNA_L-elsbetiae_contig1515.3684.1|Name=mRNA_L-elsbetiae_contig1515.3684.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1776bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:4441..6377+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACACCTTGACAGACGGGGTTGGTAGTCTAGGAGTCGCCTCCCCGGA
GGCTACCAGCAACGGTGACCCGCCGGAGCCGGGGGGGGGTGCACCCAGGC
GACGAGGACACGTATCGCGGCGAGAGACACTCACCGGCTCGACGCATGGT
GCTTTCCTTCCAGAGCCTGCACGCCCTGCACTTGCTATCGGAGGGGTTGG
ACGGGCCTACCCAAGAGCAGCGTGCGCCAGTGCCGGTGCGCAGAGCTGTG
CGATGATGCGAAGGCAGAAGGCGCAGTCTGGTACGGAGACTGGCGGCCCT
GGGCAACACCAGTCGAAAAGGCACAGAAACGGCTCGCTTGCTGCAGGGGC
GTCGTTATCTTTCAGATGGACACCTTGACAGACGGGGTTGGTAGTCTAGG
AGTCGCCTCCCCGGAGGCTACCAGCAACGGTGACCCGCCGGAGCCGGGGG
GGGGTGCACCCAGGCGACGAGGACACGTATCGCGGCGAGAGACACTCACC
GGCTCGACGCATGGTGCTTTCCTTCCAGAGCCTGCACGCCCTGCACTTGC
TATCGGAGGGGTTGGACGGGCCTACCCAAGAGCAGCGTGCGCCAGTGCCG
GTGCGCAGAGCTGTGCGATGATGCGAAGGCAGAAGGCGCAGTCTGGTACG
GAGACTGGCGGCCCTGGGCAACACCAGTCGAAAAGGCACAGAAACGGCTC
GCTTGCTGCAGGGGCGTCGTTATCTTTCAGGAACGTCGTCAAACCTTCCG
TACTGCCCGTCGAAGACGATGTGGCCGGTGTTTCTGCGACCCCGTCAGCA
GGAGCGGCGGCGGCGGCGGCGCCAGCGGCGCCGGCACCCCGAGCTCGGAG
TCATCCCGCACCCCGCGAACGTCGTCAAACCTTCCGTACTGCCCGTCGAA
GACGATGTGGCCGGTGTTTCTGCGACCCCGTCAGCAGGAGCGGCGGCGGC
GGCGGCGCCAGCGGCGCCGGCACCCCGAGCTCGGAGTCATCCCGCACCCC
GCACCGGGGCAGCCGGTGGCTGCGGTGCCATGGACGTAGAAATAACGGAA
GGGCAAGAGCGCTGCTGCCCGTGCAGCAGCACGATGCCCCCCCCCTCGAC
GCCGCACCTACCCCGCACCGCCTCCTCGCTAGCAAGGCTGATGCGGCAGG
GGGGCGCCGGGAAGAGGGAGGCGCCGGGGTTCGACGCGGCGGTGACCGCT
TCGACCGGGGCAGCCGGTGGCTGCGGTGCCATGGACGTAGAAATAACGGA
AGGGCAAGAGCGCTGCTGCCCGTGCAGCAGCACGATGCCCCCCCCCTCGA
CGCCGCACCTACCCCGCACCGCCTCCTCGCTAGCAAGGCTGATGCGGCAG
GGGGGCGCCGGGAAGAGGGAGGCGCCGGGGTTCGACGCGGCGGTGACCGC
TTCGGCGAACGAAGGGAAAGGCGGGGCGACGGCGGCAGCAGCGGCGGCGG
CGGCAGCGGCGGCGGCGGCCGGCGCGGAGGGCGGCCCAGACCCGGACGAG
GACCTGGACGACAACAGCAGCGACGGCGGGGCGGCGCACGAAGACCTGTC
GGCGTGGCTGCACAGCACGGACGACTGGTGGACCTCGTGAGCGAACGAAG
GGAAAGGCGGGGCGACGGCGGCAGCAGCGGCGGCGGCGGCAGCGGCGGCG
GCGGCCGGCGCGGAGGGCGGCCCAGACCCGGACGAGGACCTGGACGACAA
CAGCAGCGACGGCGGGGCGGCGCACGAAGACCTGTCGGCGTGGCTGCACA
GCACGGACGACTGGTGGACCTCGTGA
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