mRNA_L-elsbetiae_contig1515.3682.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1515.3682.1
Unique NamemRNA_L-elsbetiae_contig1515.3682.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1515.3682.1 vs. uniprot
Match: A0A4D9DBJ1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBJ1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.900e-6
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    4 SAINAVSKAGRWKEALSMMKQMEKDEVAFDN--FTYSSVIGACGKGGKPKKALDLLDEMVKVHG 189
            S +  +S+AGRW+EA+ +++ ME  E  +      Y+SV+ AC    +   AL LLDEMV+  G
Sbjct:  898 SVLQTLSQAGRWQEAVGLLRAMEGTERGWGGTEIAYTSVVNACAGADQLDMALRLLDEMVEEKG 961
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1515.3682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4D9DBJ1_9STRA5.900e-639.06Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1515contigL-elsbetiae_contig1515:152..349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-28_003050.3
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.5914457-CDS-L-elsbetiae_contig1515:151..3491622815616.5914457-CDS-L-elsbetiae_contig1515:151..349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 152..349 -
1691682993.4827156-CDS-L-elsbetiae_contig1515:151..3491691682993.4827156-CDS-L-elsbetiae_contig1515:151..349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 152..349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1515.3682.1prot_L-elsbetiae_contig1515.3682.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1515 152..349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1515.3682.1

>prot_L-elsbetiae_contig1515.3682.1 ID=prot_L-elsbetiae_contig1515.3682.1|Name=mRNA_L-elsbetiae_contig1515.3682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
HSAINAVSKAGRWKEALSMMKQMEKDEVAFDNFTYSSVIGACGKGGKPKK
ALDLLDEMVKVHGEN*
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mRNA from alignment at L-elsbetiae_contig1515:152..349-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1515.3682.1 ID=mRNA_L-elsbetiae_contig1515.3682.1|Name=mRNA_L-elsbetiae_contig1515.3682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:152..349- (Laminarionema elsbetiae ELsaHSoW15)
CACAGCGCAATCAACGCCGTCAGCAAGGCGGGGCGGTGGAAGGAAGCCCT
TTCCATGATGAAGCAGATGGAAAAGGACGAGGTGGCCTTCGACAATTTTA
CCTACAGCAGCGTCATCGGCGCGTGCGGGAAGGGGGGGAAGCCGAAGAAG
GCGCTGGATCTGCTGGACGAGATGGTGAAGGTCCACGGTGAGAATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1515:152..349-

>mRNA_L-elsbetiae_contig1515.3682.1 ID=mRNA_L-elsbetiae_contig1515.3682.1|Name=mRNA_L-elsbetiae_contig1515.3682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:152..349- (Laminarionema elsbetiae ELsaHSoW15)
CACAGCGCAATCAACGCCGTCAGCAAGGCGGGGCGGTGGAAGGAAGCCCT
TTCCATGATGAAGCAGATGGAAAAGGACGAGGTGGCCTTCGACAATTTTA
CCTACAGCAGCGTCATCGGCGCGTGCGGGAAGGGGGGGAAGCCGAAGAAG
GCGCTGGATCTGCTGGACGAGATGGTGAAGGTCCACGGTGAGAATTAACA
CAGCGCAATCAACGCCGTCAGCAAGGCGGGGCGGTGGAAGGAAGCCCTTT
CCATGATGAAGCAGATGGAAAAGGACGAGGTGGCCTTCGACAATTTTACC
TACAGCAGCGTCATCGGCGCGTGCGGGAAGGGGGGGAAGCCGAAGAAGGC
GCTGGATCTGCTGGACGAGATGGTGAAGGTCCACGGTGAGAATTAA
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