prot_L-elsbetiae_contig1515.3682.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1515.3682.1
Unique Nameprot_L-elsbetiae_contig1515.3682.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length66
Homology
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BLAST of mRNA_L-elsbetiae_contig1515.3682.1 vs. uniprot
Match: A0A4D9DBJ1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBJ1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.900e-6
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 0 
Query:    2 SAINAVSKAGRWKEALSMMKQMEKDEVAFDN--FTYSSVIGACGKGGKPKKALDLLDEMVKVHG 63
            S +  +S+AGRW+EA+ +++ ME  E  +      Y+SV+ AC    +   AL LLDEMV+  G
Sbjct:  898 SVLQTLSQAGRWQEAVGLLRAMEGTERGWGGTEIAYTSVVNACAGADQLDMALRLLDEMVEEKG 961
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1515.3682.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4D9DBJ1_9STRA5.900e-639.06Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 3..28
e-value: 5.9E-5
score: 21.0
coord: 33..60
e-value: 4.9E-8
score: 30.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 4..43
e-value: 1.7E-8
score: 34.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..30
score: 8.111
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 31..61
score: 10.106
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..64
e-value: 2.0E-16
score: 61.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1515contigL-elsbetiae_contig1515:152..349 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1515.3682.1mRNA_L-elsbetiae_contig1515.3682.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1515 152..349 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1515.3682.1 ID=prot_L-elsbetiae_contig1515.3682.1|Name=mRNA_L-elsbetiae_contig1515.3682.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
HSAINAVSKAGRWKEALSMMKQMEKDEVAFDNFTYSSVIGACGKGGKPKK
ALDLLDEMVKVHGEN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf