mRNA_L-elsbetiae_contig15138.3678.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15138.3678.1
Unique NamemRNA_L-elsbetiae_contig15138.3678.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15138.3678.1 vs. uniprot
Match: D8LBY4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY4_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 9.370e-10
Identity = 45/119 (37.82%), Postives = 51/119 (42.86%), Query Frame = 1 
Query:    1 PAGWGACQACIANIVFFVLLAGSIPPELGSLAALKRLYLQNNQLSXXXXXXXXXXXXXTLIPVEVQHLQCGERSKLRRYGACQACIANIVFFASLAGSIPPELGSLAALGTLHLENNQL 357
            P  WGA Q      +    LAGSIPPELGS AAL  L L  N  +                     +     R     +GA Q      +    LAGSIPPELG+LAAL  L L  NQL
Sbjct:    7 PNAWGALQGLAHRALGSNQLAGSIPPELGSFAALTHLELGENSQTMRTIPKELGALTELKESFPSYNQLLDTRPIPNAWGALQGLAHLALGSNQLAGSIPPELGNLAALACLDLRENQL 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15138.3678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBY4_ECTSI9.370e-1037.82Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15138contigL-elsbetiae_contig15138:2141..3472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size357
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15138.3678.1prot_L-elsbetiae_contig15138.3678.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15138 2141..3472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.2160847-CDS-L-elsbetiae_contig15138:2140..22761622815616.2160847-CDS-L-elsbetiae_contig15138:2140..2276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15138 2141..2276 +
1691682993.240553-CDS-L-elsbetiae_contig15138:2140..22761691682993.240553-CDS-L-elsbetiae_contig15138:2140..2276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15138 2141..2276 +
1622815616.2288256-CDS-L-elsbetiae_contig15138:2804..28451622815616.2288256-CDS-L-elsbetiae_contig15138:2804..2845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15138 2805..2845 +
1691682993.2584875-CDS-L-elsbetiae_contig15138:2804..28451691682993.2584875-CDS-L-elsbetiae_contig15138:2804..2845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15138 2805..2845 +
1622815616.2411838-CDS-L-elsbetiae_contig15138:3292..34721622815616.2411838-CDS-L-elsbetiae_contig15138:3292..3472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15138 3293..3472 +
1691682993.2717292-CDS-L-elsbetiae_contig15138:3292..34721691682993.2717292-CDS-L-elsbetiae_contig15138:3292..3472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15138 3293..3472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15138.3678.1

>prot_L-elsbetiae_contig15138.3678.1 ID=prot_L-elsbetiae_contig15138.3678.1|Name=mRNA_L-elsbetiae_contig15138.3678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
PAGWGACQACIANIVFFVLLAGSIPPELGSLAALKRLYLQNNQLSGSIPP
ELGSLAALTLIPVEVQHLQCGERSKLRRYGACQACIANIVFFASLAGSIP
PELGSLAALGTLHLENNQL
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mRNA from alignment at L-elsbetiae_contig15138:2141..3472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15138.3678.1 ID=mRNA_L-elsbetiae_contig15138.3678.1|Name=mRNA_L-elsbetiae_contig15138.3678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig15138:2141..3472+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCGGGATGGGGTGCCTGCCAAGCGTGTATTGCCAACATCGTGTTTTT
TGTGTTGCTTGCAGGCTCCATCCCCCCGGAACTGGGAAGCCTCGCAGCAC
TGAAGAGGCTCTATCTTCAGAACAACCAGCTCAGCGGTGAGTCCCTAGAT
AAATGACTAGTTTTACGTTTCCAATCTCAAAGTGGGAATCGTTATGGTAG
CTGTTCTAGACCTTGTGTCAGTTACAGGTATGAACTGACACTTCCTCTAA
AAATAAATAAGAACTCACCTGTGAGCTGGTTGTTGTCGAGCGCCAGCCAC
TGGAGCTTTCTGAAGATTCCCATCTCGGCCGGGATGGGGCCTGCAAGCAG
AAGAGTACGCTTGAAGAATGCGGGGAATTAAAGATTAACCTACTCGGCTT
CTAGCAGTTGACTTACCCACGCAGGACCGTTTTTCTATACTAGACGCCAG
AGAATTTATTTTGTTTTCCCCCGCTAACTTCGTTTTTGCTCACCATCTGG
CAGAAGAATGTTGGAATTGTGTGATGATAAGTGCCCCCGTGACTTACCGA
TCAGCTGGTTCCCATTGAGGTATAGCACTTGCGGTGCGGTGAGCTTCCCA
AGCTCCGGAGGGATGGGGTGCCAAGCGTGTATCGCCAACATCGTATTTTT
TGTGTTGCTTGCAGGCTCCATCCCCCCGGAACTGGGAAGCCTCGCAGCAC
TGACGGTGCTCCATCTTTAGAACAACAAGCTCAGCGGTGAGTCCCTAGAT
AAACTACTAGTTTTACCTTCCCAGTCACAAAGTGCGAAGAGATGGTAGCT
GTTCTAGACCTTGTGTCAGATAAAGGTATGAACTGACACTTCCTCTAAAA
ATAAATAAGAACTCACCTGTGAGCTGGTTGTTGTCGAGCGCCAGCCACTG
GAGCTTTCTGAGGTTTCCCAGCTCCGCCGGGATGGGGACTGCAAGCAGAA
GAGTACGTTTGAAGAATGCGGGGAATTAAAGATTAACCTACTCGGCTTCT
AGCAGTTGACTTACCCACGCAGGACCGTTTTTCTAGACTAGACGCCGGAG
AATTTATTTTGTTTTCCCCCGCTAACTTCGTTTTTGCTCATCATCTGGCA
GAAGAATGTTGGAATTGTGTGATGATACGTGCCCTCGTGACTTACCGATC
AGCTGATTCCCGTTGAAGTACAGCACTTGCAGTGCGGTGAGCGTTCCAAG
CTCCGGCGGTATGGGGCCTGCCAAGCGTGTATCGCCAACATCGTATTTTT
TGCGTCGCTTGCAGGCTCCATACCCCCGGAACTGGGAAGCCTCGCAGCAC
TGGGGACGCTCCATCTTGAGAACAACCAGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15138:2141..3472+

>mRNA_L-elsbetiae_contig15138.3678.1 ID=mRNA_L-elsbetiae_contig15138.3678.1|Name=mRNA_L-elsbetiae_contig15138.3678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig15138:2141..3472+ (Laminarionema elsbetiae ELsaHSoW15)
CCGGCGGGATGGGGTGCCTGCCAAGCGTGTATTGCCAACATCGTGTTTTT
TGTGTTGCTTGCAGGCTCCATCCCCCCGGAACTGGGAAGCCTCGCAGCAC
TGAAGAGGCTCTATCTTCAGAACAACCAGCTCAGCGCCGGCGGGATGGGG
TGCCTGCCAAGCGTGTATTGCCAACATCGTGTTTTTTGTGTTGCTTGCAG
GCTCCATCCCCCCGGAACTGGGAAGCCTCGCAGCACTGAAGAGGCTCTAT
CTTCAGAACAACCAGCTCAGCGGCTCCATCCCCCCGGAACTGGGAAGCCT
CGCAGCACTGACGGCTCCATCCCCCCGGAACTGGGAAGCCTCGCAGCACT
GACGCTGATTCCCGTTGAAGTACAGCACTTGCAGTGCGGTGAGCGTTCCA
AGCTCCGGCGGTATGGGGCCTGCCAAGCGTGTATCGCCAACATCGTATTT
TTTGCGTCGCTTGCAGGCTCCATACCCCCGGAACTGGGAAGCCTCGCAGC
ACTGGGGACGCTCCATCTTGAGAACAACCAGCTCCTGATTCCCGTTGAAG
TACAGCACTTGCAGTGCGGTGAGCGTTCCAAGCTCCGGCGGTATGGGGCC
TGCCAAGCGTGTATCGCCAACATCGTATTTTTTGCGTCGCTTGCAGGCTC
CATACCCCCGGAACTGGGAAGCCTCGCAGCACTGGGGACGCTCCATCTTG
AGAACAACCAGCTC
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