prot_L-elsbetiae_contig15138.3678.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig15138.3678.1
Unique Nameprot_L-elsbetiae_contig15138.3678.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length119
Homology
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BLAST of mRNA_L-elsbetiae_contig15138.3678.1 vs. uniprot
Match: D8LBY4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY4_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 9.370e-10
Identity = 45/119 (37.82%), Postives = 51/119 (42.86%), Query Frame = 0 
Query:    1 PAGWGACQACIANIVFFVLLAGSIPPELGSLAALKRLYLQNNQLSXXXXXXXXXXXXXTLIPVEVQHLQCGERSKLRRYGACQACIANIVFFASLAGSIPPELGSLAALGTLHLENNQL 119
            P  WGA Q      +    LAGSIPPELGS AAL  L L  N  +                     +     R     +GA Q      +    LAGSIPPELG+LAAL  L L  NQL
Sbjct:    7 PNAWGALQGLAHRALGSNQLAGSIPPELGSFAALTHLELGENSQTMRTIPKELGALTELKESFPSYNQLLDTRPIPNAWGALQGLAHLALGSNQLAGSIPPELGNLAALACLDLRENQL 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15138.3678.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBY4_ECTSI9.370e-1037.82Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 16..119
e-value: 1.6E-15
score: 58.9
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 20..66
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 20..66
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.68
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 20..119
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15138contigL-elsbetiae_contig15138:2141..3472 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15138.3678.1mRNA_L-elsbetiae_contig15138.3678.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig15138 2141..3472 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig15138.3678.1 ID=prot_L-elsbetiae_contig15138.3678.1|Name=mRNA_L-elsbetiae_contig15138.3678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
PAGWGACQACIANIVFFVLLAGSIPPELGSLAALKRLYLQNNQLSGSIPP
ELGSLAALTLIPVEVQHLQCGERSKLRRYGACQACIANIVFFASLAGSIP
PELGSLAALGTLHLENNQL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf