mRNA_L-elsbetiae_contig15137.3677.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15137.3677.1
Unique NamemRNA_L-elsbetiae_contig15137.3677.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15137.3677.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.230e-30
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 GEALGATSASDPGAATAKARVWMLRALRDGIRTSQDLELAAGKRALPLLLAMADSPAGGGDAALQGLIFDVLCKVAALERSGAR 252
            G+ LGATSASDPGAA+ KARVWMLRALRDG+ TS+DLELAAGKRA+PLLLAMADSP G GDA +Q LI D+L +VA+LERSGAR
Sbjct: 2709 GDTLGATSASDPGAASNKARVWMLRALRDGLHTSEDLELAAGKRAVPLLLAMADSPVGNGDAVIQELIVDILGRVASLERSGAR 2792
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BLAST of mRNA_L-elsbetiae_contig15137.3677.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 5.810e-28
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 1 
Query:    1 GEALGATSASDPGAATAKARVWMLRALRDGIRTSQDLELAAGKRALPLLLAMADSPAGGGDAALQGLIFDVLCKVAALERSGAR 252
            G+ LGATSASDPGAA+ KARVWMLRALRDG+RTS+DLELAAGKRA+PLLLAMADSP G GD  +Q LI D+L +VA+LE  G +
Sbjct: 2079 GDTLGATSASDPGAASNKARVWMLRALRDGLRTSEDLELAAGKRAVPLLLAMADSPVGNGDVVIQELIVDILGRVASLEALGVK 2162
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15137.3677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K182_9PHAE2.230e-3078.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8A9_ECTSI5.810e-2873.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15137contigL-elsbetiae_contig15137:1400..2994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue3.9e-25
Seed eggNOG ortholog2880.D7G8A9
Preferred nameURB1
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1791@1,KOG1791@2759
EC2.5.1.54,3.6.1.52
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Exons3
Model size471
Cds size468
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15137.3677.1prot_L-elsbetiae_contig15137.3677.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15137 1400..2992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.1475546-CDS-L-elsbetiae_contig15137:1399..14871622815616.1475546-CDS-L-elsbetiae_contig15137:1399..1487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 1400..1487 +
1691682993.2123947-CDS-L-elsbetiae_contig15137:1399..14871691682993.2123947-CDS-L-elsbetiae_contig15137:1399..1487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 1400..1487 +
1622815616.1621528-CDS-L-elsbetiae_contig15137:2089..22521622815616.1621528-CDS-L-elsbetiae_contig15137:2089..2252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 2090..2252 +
1691682993.2233753-CDS-L-elsbetiae_contig15137:2089..22521691682993.2233753-CDS-L-elsbetiae_contig15137:2089..2252Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 2090..2252 +
1622815616.177449-CDS-L-elsbetiae_contig15137:2775..29921622815616.177449-CDS-L-elsbetiae_contig15137:2775..2992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 2776..2992 +
1691682993.2316587-CDS-L-elsbetiae_contig15137:2775..29921691682993.2316587-CDS-L-elsbetiae_contig15137:2775..2992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 2776..2992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15137.3677.1

>prot_L-elsbetiae_contig15137.3677.1 ID=prot_L-elsbetiae_contig15137.3677.1|Name=mRNA_L-elsbetiae_contig15137.3677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
GEALGATSASDPGAATAKARVWMLRALRDGIRTSQDLELAAGKRALPLLL
AMADSPAGGGDAALQGLIFDVLCKVAALERSGARYLLNSIGLVAWARVVL
GRSLLVNAPAAPAGKRKAGTVGGGGGGVGGAKRHRAGPGTGETLPADLQA
QMLSLL
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mRNA from alignment at L-elsbetiae_contig15137:1400..2994+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15137.3677.1 ID=mRNA_L-elsbetiae_contig15137.3677.1|Name=mRNA_L-elsbetiae_contig15137.3677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1595bp|location=Sequence derived from alignment at L-elsbetiae_contig15137:1400..2994+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGAAGCCCTGGGCGCGACCTCCGCTTCTGACCCCGGCGCCGCCACGGC
GAAGGCTCGGGTGTGGATGCTCCGCGCCCTTCGAGACGGTGAGAGAGGGC
AGCATGCACGCACGCACGCACGTACGCAACGAGGGAAGCACATTTTTTGT
TTTTTACTGAGGGCTTGGTTCAGCACACCCTTCGGGTGTATTGGTCCAGA
ACATTTAGACTGGTATCTCAACCCCCGGCAACGGTGAACAGCAGCACTCA
CGGGGATCCGCACGTGGCTTTCCGGGGGGGGGGGGCGTGGGAACACGGGT
ACTCCTACTGTAGCATTGTGTTCCACGGATTTTGGTCGCATTTTTTGTTT
TTGAGATGTATATACATCCAACCATGGATAATCAAGAACAACTCGCGTGT
TGAGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCGGCCC
CCCCCCCCCCCCCCCCCCCCCCCCCANNNNNNNNNGCGTTTTTTGTTTGT
GAGAGGTATAAACCACCAAACAGGGGACACCAAAAACACACCGGGGTGTT
CGCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCGGCTGTTGCGCTCGCTG
CGCACGCCCCCTCCGATAATCTCGCGGACGGCATCGGAAGGCATCCGCAC
GAGCCAAGACCTGGAGCTGGCCGCGGGCAAGCGCGCGTTGCCGCTGCTCC
TTGCCATGGCGGACTCGCCGGCGGGCGGCGGCGACGCGGCCCTCCAGGGG
CTGATCTTCGACGTGCTGTGCAAGGTGGCCGCCCTTGAGCGCTCGGGAGC
AAGGTGCGATTCAGCTCGGCACGGTATGGGTAGCGAGCGCCCTTGGGGGA
GGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGGTTTTTG
TCGGAGGCGTTGTTTTTGTTGGTGCTGCTGCTGTTGTTGCTGTTGATGTC
GCTGTTGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTT
GTTGCTGTTGCTGCTGCTGCTGTGGTCATCGTTGTTGGCTGGTATGTCGT
TGTTGTGTTGGTACGGGTGGCGGTTTGCATTACTACGGTTGTTATTCGCT
GATCGAATCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTGGNNNN
NNTTGTTTTGTTTTTTTTTTGTTTTTGCGGTTGGGGTTTTCTTTTCCCCC
TTTTTTTTTTCGCTGTACGATTCCCCCCCCCCCCCCCCCCCCTCCCACAC
ACCGCGCCCCTCTCACCGGCCGGCAGGTACCTCCTCAACTCCATCGGACT
CGTCGCCTGGGCGCGTGTGGTGCTAGGCCGCAGTCTGCTGGTGAATGCTC
CCGCGGCCCCCGCCGGCAAGCGCAAAGCCGGCACCGTCGGCGGCGGCGGC
GGCGGCGTCGGCGGAGCCAAGCGCCACCGCGCAGGGCCGGGGACCGGAGA
GACCTTGCCGGCAGACCTCCAGGCACAAATGCTGTCCCTCCTAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15137:1400..2994+

>mRNA_L-elsbetiae_contig15137.3677.1 ID=mRNA_L-elsbetiae_contig15137.3677.1|Name=mRNA_L-elsbetiae_contig15137.3677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig15137:1400..2994+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGAAGCCCTGGGCGCGACCTCCGCTTCTGACCCCGGCGCCGCCACGGC
GAAGGCTCGGGTGTGGATGCTCCGCGCCCTTCGAGACGGGGGAAGCCCTG
GGCGCGACCTCCGCTTCTGACCCCGGCGCCGCCACGGCGAAGGCTCGGGT
GTGGATGCTCCGCGCCCTTCGAGACGGCATCCGCACGAGCCAAGACCTGG
AGCTGGCCGCGGGCAAGCGCGCGTTGCCGCTGCTCCTTGCCATGGCGGAC
TCGCCGGCGGGCGGCGGCGACGCGGCCCTCCAGGGGCTGATCTTCGACGT
GCTGTGCAAGGTGGCCGCCCTTGAGCGCTCGGGAGCAAGGCATCCGCACG
AGCCAAGACCTGGAGCTGGCCGCGGGCAAGCGCGCGTTGCCGCTGCTCCT
TGCCATGGCGGACTCGCCGGCGGGCGGCGGCGACGCGGCCCTCCAGGGGC
TGATCTTCGACGTGCTGTGCAAGGTGGCCGCCCTTGAGCGCTCGGGAGCA
AGGTACCTCCTCAACTCCATCGGACTCGTCGCCTGGGCGCGTGTGGTGCT
AGGCCGCAGTCTGCTGGTGAATGCTCCCGCGGCCCCCGCCGGCAAGCGCA
AAGCCGGCACCGTCGGCGGCGGCGGCGGCGGCGTCGGCGGAGCCAAGCGC
CACCGCGCAGGGCCGGGGACCGGAGAGACCTTGCCGGCAGACCTCCAGGC
ACAAATGCTGTCCCTCCTAGTACCTCCTCAACTCCATCGGACTCGTCGCC
TGGGCGCGTGTGGTGCTAGGCCGCAGTCTGCTGGTGAATGCTCCCGCGGC
CCCCGCCGGCAAGCGCAAAGCCGGCACCGTCGGCGGCGGCGGCGGCGGCG
TCGGCGGAGCCAAGCGCCACCGCGCAGGGCCGGGGACCGGAGAGACCTTG
CCGGCAGACCTCCAGGCACAAATGCTGTCCCTCCTA
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