mRNA_L-elsbetiae_contig15137.3676.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15137.3676.1
Unique NamemRNA_L-elsbetiae_contig15137.3676.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.650e-36
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSLRDGLETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLFDTLFT 226
            FRQRPQLTLLLR LRDG+ETPL+RVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRP+VRLDELPLFD LFT
Sbjct: 2618 FRQRPQLTLLLRCLRDGVETPLQRVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPFVRLDELPLFDVLFT 2692          
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.190e-36
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSLRDGLETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLFDTLFT 226
            FRQRPQLTLLLR LRDG+ETPL+RVPCAVAVVLAKASEALA+SPGSEIYRVVNSFLLHRP+VRLDELPLFD LFT
Sbjct: 1988 FRQRPQLTLLLRCLRDGVETPLQRVPCAVAVVLAKASEALAASPGSEIYRVVNSFLLHRPFVRLDELPLFDVLFT 2062          
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: A0A0L0GCJ1_9EUKA (NopRA1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GCJ1_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 3.640e-7
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSLRDGLETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLF 211
            FR++ Q+  LL   RDG+E+  +RVP  + V +++A   L + P   +Y  VN F+L RPY+ LD++PLF
Sbjct:  128 FREQSQVQYLLSVFRDGIESNDQRVPTIMTVFVSEALLVLIA-PDHAMYATVNKFILQRPYLPLDDVPLF 196          
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: L8HLC0_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLC0_ACACA)

HSP 1 Score: 54.7 bits (130), Expect = 6.980e-7
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSLRDGLETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLFDTL 220
            FR+RPQ+T LLR++R+ +    +R+P  +A   A A+  +  +P   +Y+ VN+FLLHRP + L ++P+   L
Sbjct: 1584 FRERPQITQLLRAVRNAMVEAFQRLPAYIASFTAHAA-LVVLTPEHGLYKPVNAFLLHRPALVLGDIPMLYEL 1655          
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: A0A1Y1IHT2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHT2_KLENI)

HSP 1 Score: 54.7 bits (130), Expect = 7.000e-7
Identity = 28/74 (37.84%), Postives = 46/74 (62.16%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSLRDGLETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLFDTLF 223
            FR++ Q+ LLL  +R+ +  PL+R+P   A   A+A+  +   P   +Y  +N FLL RP + L+++PLF +LF
Sbjct: 2315 FREKQQVRLLLHYVRNAITEPLQRIPMTSAAFAAEAA-CIQMHPEHALYGALNKFLLKRPALDLEDIPLFYSLF 2387          
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: A0A8J5X6D7_DIALT (NopRA1 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X6D7_DIALT)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-5
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSLRDGL--ETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLFDTLF 223
            FR+R QL LLLR+L+DG+    P  R+P AVA     A+  LA+ P   +Y  +N  LL RP++   E+P F  LF
Sbjct: 2905 FRERAQLELLLRALKDGVLAPPPAARLPRAVAAFAGAAASVLAN-PTHTLYARLNRELLGRPWLEHSEMPSFLQLF 2979          
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: A0A8H3X5W0_GIGMA (Ribosome 60S biogenesis N-terminal-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A8H3X5W0_GIGMA)

HSP 1 Score: 50.8 bits (120), Expect = 1.590e-5
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSL------RDGLETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLFDTLF 223
            FR++ Q+ LLL S       RD     L+R+P  ++V +A A     ++P   +Y ++N FLL RP + L+++P+F  LF
Sbjct: 1459 FREKSQILLLLNSFKNSIVDRDNENKSLQRIPTIISVFIAHALNVF-TNPAHFMYPIINKFLLQRPILDLEDVPMFYNLF 1537          
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: A0A433QS70_9FUNG (Uncharacterized protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QS70_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 1.600e-5
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSLR-------DGLETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLFDTLF 223
            FR++ Q+ LLL SL+       D L+   +R+P  + V +A A  A+   P   +Y  VN FLL RP++ L+++P+F +LF
Sbjct: 1776 FREKKQILLLLDSLKNAITDCGDHLDPMTQRIPTIITVFVAHAF-AILLQPAHFMYPHVNRFLLQRPFIDLEDIPMFYSLF 1855          
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: A0A433PGN9_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PGN9_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 2.180e-5
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSLRDGL------ETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLFDTLF 223
            FR++ Q+ LLL SL++ +      +  L+R+P  + V +A A   L   P   +Y  VN FLL RP++ L+++P+F +LF
Sbjct: 1638 FREKKQILLLLDSLKNAIADSNDKDVILQRIPTIITVFVAHALGILLQ-PAHFMYPHVNKFLLQRPFIDLEDIPMFYSLF 1716          
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Match: A0A0D2WMT1_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMT1_CAPO3)

HSP 1 Score: 50.4 bits (119), Expect = 2.190e-5
Identity = 26/74 (35.14%), Postives = 46/74 (62.16%), Query Frame = 2
Query:    2 FRQRPQLTLLLRSLRDGLETPLERVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPYVRLDELPLFDTLF 223
            FR+R QL +LL SLR+ + +  +++P  +  V+  A+  + +S    +Y  +N +LL RP + LD++P+F  LF
Sbjct: 2311 FRERTQLRVLLMSLRNAVVSRAQQLPSVLMSVVVHAARVVTNS-AHPLYATLNKYLLARPALELDDIPMFYQLF 2383          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15137.3676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K182_9PHAE1.650e-3693.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8A9_ECTSI4.190e-3692.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0L0GCJ1_9EUKA3.640e-741.43NopRA1 domain-containing protein n=1 Tax=Sphaerofo... [more]
L8HLC0_ACACA6.980e-738.36Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A1Y1IHT2_KLENI7.000e-737.84Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A8J5X6D7_DIALT1.170e-543.42NopRA1 domain-containing protein n=1 Tax=Diacronem... [more]
A0A8H3X5W0_GIGMA1.590e-535.00Ribosome 60S biogenesis N-terminal-domain-containi... [more]
A0A433QS70_9FUNG1.600e-537.04Uncharacterized protein n=2 Tax=Jimgerdemannia fla... [more]
A0A433PGN9_9FUNG2.180e-536.25Uncharacterized protein n=1 Tax=Endogone sp. FLAS-... [more]
A0A0D2WMT1_CAPO32.190e-535.14Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15137contigL-elsbetiae_contig15137:323..1351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size229
Cds size228
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15137.3676.1prot_L-elsbetiae_contig15137.3676.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15137 323..1350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.0693738-CDS-L-elsbetiae_contig15137:322..3581622815616.0693738-CDS-L-elsbetiae_contig15137:322..358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 323..358 +
1691682993.1796858-CDS-L-elsbetiae_contig15137:322..3581691682993.1796858-CDS-L-elsbetiae_contig15137:322..358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 323..358 +
1622815616.0858061-CDS-L-elsbetiae_contig15137:915..10411622815616.0858061-CDS-L-elsbetiae_contig15137:915..1041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 916..1041 +
1691682993.1897757-CDS-L-elsbetiae_contig15137:915..10411691682993.1897757-CDS-L-elsbetiae_contig15137:915..1041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 916..1041 +
1622815616.1004562-CDS-L-elsbetiae_contig15137:1284..13501622815616.1004562-CDS-L-elsbetiae_contig15137:1284..1350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 1285..1350 +
1691682993.2001257-CDS-L-elsbetiae_contig15137:1284..13501691682993.2001257-CDS-L-elsbetiae_contig15137:1284..1350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15137 1285..1350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15137.3676.1

>prot_L-elsbetiae_contig15137.3676.1 ID=prot_L-elsbetiae_contig15137.3676.1|Name=mRNA_L-elsbetiae_contig15137.3676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
LPPEAAADTAAEVPPRWTGDSSGEGSLCGGGGAGEGVGGACVQSWQRDIP
GRQQLSAAPPLRPLGRVAALRHAVHG
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mRNA from alignment at L-elsbetiae_contig15137:323..1351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15137.3676.1 ID=mRNA_L-elsbetiae_contig15137.3676.1|Name=mRNA_L-elsbetiae_contig15137.3676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1029bp|location=Sequence derived from alignment at L-elsbetiae_contig15137:323..1351+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCCGCCAGAGGCCGCAGCTGACACTGCTGCTGAGGTGATGCTCGCCCC TCTGGTGGCGCCCGTTCGTCCGGCGGCGTGTGTGTGTTGATAAACAATGC GCTTTTCCTGCAATAGAGCCAGCAGTTCTCAAAAGGAGCTGTGGGGGCAG AGCGGGGGGGTTATCTATCTAAGAAATATATGGAGTGAAAAATACCCCAC AACAGTAGTAGTCACTTTTTCAGATTTTGAGGGGGCAGGAAGCCTATGGC CTTTTGCGGGCTGCTTGCCCTTCTCGCTCGCGTGCGGCGGTGTGTGTGTG TGTGTGTGTGTGTGTGTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTTGACAAGCAACGGTCTTTGCGGGGCTGGCGCAGGCCGC TCATTGTCGCGTGCCGTCTGCTGTGGTTGTTAGTTGCGCCCGGTGAGCAG CCTGTGTTCCTCGGAGTTATTTAGCAGTACCCGATCTCGAGGCGGAAACG ACATCATACTGGTGGTAGATTGCTCCGTATGCATAAACAGCAAACCAACA CGCACATTTTTTTTTTATTCTTCTTCTTTTGTGTGGGTTTCAGGTCCCTC CGAGATGGACTGGAGACTCCTCTGGAGAGGGTTCCCTGTGCGGTGGCGGT GGTGCTGGCGAAGGCGTCGGAGGCGCTTGCGTCCAGTCCTGGCAGCGAGA TATACCGGGTCGTCAACAGGCGAGGGCTCTATCTAGCCTGTTGGCATGCA CACACCGCGCAAATATGCAACACCGTCGTGACAGCGTATGCATACGTCTA TACCACCCGGATCTGCGCGCCCGCCCCGGGGCCCCTCTCTCGCTCCTTGC GTGCCCCGCGTGTGTGTTTGCTGCATATATTTCAGCTGTTTCTCTCCTTT CTTTCTCAACCCCCCCCCCCGCCCCCCACCCGTTCCTCCCTTGCTTGCAT TCGCGTCGACAGCTTTCTGCTGCACCGCCCCTACGTCCGCTTGGACGAGT TGCCGCTCTTCGACACGCTGTTCACGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15137:323..1351+

>mRNA_L-elsbetiae_contig15137.3676.1 ID=mRNA_L-elsbetiae_contig15137.3676.1|Name=mRNA_L-elsbetiae_contig15137.3676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig15137:323..1351+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCCGCCAGAGGCCGCAGCTGACACTGCTGCTGAGCTTCCGCCAGAGGC
CGCAGCTGACACTGCTGCTGAGGTCCCTCCGAGATGGACTGGAGACTCCT
CTGGAGAGGGTTCCCTGTGCGGTGGCGGTGGTGCTGGCGAAGGCGTCGGA
GGCGCTTGCGTCCAGTCCTGGCAGCGAGATATACCGGGTCGTCAACAGGT
CCCTCCGAGATGGACTGGAGACTCCTCTGGAGAGGGTTCCCTGTGCGGTG
GCGGTGGTGCTGGCGAAGGCGTCGGAGGCGCTTGCGTCCAGTCCTGGCAG
CGAGATATACCGGGTCGTCAACAGCTTTCTGCTGCACCGCCCCTACGTCC
GCTTGGACGAGTTGCCGCTCTTCGACACGCTGTTCACGGGCTTTCTGCTG
CACCGCCCCTACGTCCGCTTGGACGAGTTGCCGCTCTTCGACACGCTGTT
CACGGG
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