mRNA_L-elsbetiae_contig15133.3675.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15133.3675.1
Unique NamemRNA_L-elsbetiae_contig15133.3675.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig15133.3675.1 vs. uniprot
Match: A0A7S3NLJ5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLJ5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.830e-7
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   34 DEAEPLCRRALEISEQIYGPNHPKIATCLNNLATQVQARGEFE 162
            DEA+PL  RA+EI E++Y PNHP +AT LNNLA  ++ +G+++
Sbjct:    1 DEAKPLYERAIEIYEKVYDPNHPHVATGLNNLAGLLEEQGKYD 43
[Close]
BLAST of mRNA_L-elsbetiae_contig15133.3675.1 vs. uniprot
Match: A0A7S3NLG6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLG6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.420e-6
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   34 DEAEPLCRRALEISEQIYGPNHPKIATCLNNLATQVQARGEFE 162
            DEA+PL  RA+EI E++Y PNHP +AT LNNLA  ++ +G+++
Sbjct:    1 DEAKPLYERAIEIYEKVYDPNHPHVATGLNNLAGLLEEQGKYD 43
[Close]
BLAST of mRNA_L-elsbetiae_contig15133.3675.1 vs. uniprot
Match: A7C642_9GAMM (TPR repeat protein n=1 Tax=Beggiatoa sp. PS TaxID=422289 RepID=A7C642_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 8.720e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   10 VYGTNRRDDEAEPLCRRALEISEQIYGPNHPKIATCLNNLA 132
            ++ T    D+A+PL  RAL I E++YGPNHP++AT LNNLA
Sbjct:    4 LHRTQGEYDQAKPLYERALAIDEKVYGPNHPEVATDLNNLA 44
[Close]
BLAST of mRNA_L-elsbetiae_contig15133.3675.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 51.2 bits (121), Expect = 1.220e-5
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   13 YGTNRRDDEAEPLCRRALEISEQIYGPNHPKIATCLNNLA 132
            Y +  + +EAEPL +RAL+I E + GP+HP +AT LNNLA
Sbjct:    1 YESQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLA 40
[Close]
BLAST of mRNA_L-elsbetiae_contig15133.3675.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.910e-5
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   28 RDDEAEPLCRRALEISEQIYGPNHPKIATCLNNLA 132
            + +EAEPL RR+L I E++YGP+HP++AT LNNLA
Sbjct:   83 KHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLA 117
[Close]
BLAST of mRNA_L-elsbetiae_contig15133.3675.1 vs. uniprot
Match: A0A8L7TK25_BRUMA (TPR_REGION domain-containing protein n=2 Tax=Brugia malayi TaxID=6279 RepID=A0A8L7TK25_BRUMA)

HSP 1 Score: 52.4 bits (124), Expect = 8.130e-5
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    7 LVYGTNRRDDEAEPLCRRALEISEQIYGPNHPKIATCLNNLA 132
            ++YG   +  +AEPLC+RALEI E + G +HP +A  LNNLA
Sbjct:  282 MLYGKRGKYKDAEPLCKRALEIRENVLGADHPDVAKQLNNLA 323
[Close]
BLAST of mRNA_L-elsbetiae_contig15133.3675.1 vs. uniprot
Match: UPI001EE4A569 (tetratricopeptide repeat protein n=1 Tax=Frankia sp. CN4 TaxID=1836974 RepID=UPI001EE4A569)

HSP 1 Score: 49.3 bits (116), Expect = 9.780e-5
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   28 RDDEAEPLCRRALEISEQIYGPNHPKIATCLNNLA 132
            R  EA PL RRAL I E +YGP+HP++A+ LNNLA
Sbjct:    6 RGAEALPLARRALAIDETVYGPDHPEVASRLNNLA 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15133.3675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S3NLJ5_9STRA7.830e-753.49Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3NLG6_9STRA1.420e-653.49Hypothetical protein (Fragment) n=2 Tax=Aureoumbra... [more]
A7C642_9GAMM8.720e-656.10TPR repeat protein n=1 Tax=Beggiatoa sp. PS TaxID=... [more]
UPI0013D295281.220e-555.00tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
D7G180_ECTSI2.910e-562.86TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8L7TK25_BRUMA8.130e-552.38TPR_REGION domain-containing protein n=2 Tax=Brugi... [more]
UPI001EE4A5699.780e-562.86tetratricopeptide repeat protein n=1 Tax=Frankia s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15133contigL-elsbetiae_contig15133:966..3526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size531
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15133.3675.1prot_L-elsbetiae_contig15133.3675.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15133 966..3526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.0123584-CDS-L-elsbetiae_contig15133:965..11031622815616.0123584-CDS-L-elsbetiae_contig15133:965..1103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15133 966..1103 +
1691682993.1486137-CDS-L-elsbetiae_contig15133:965..11031691682993.1486137-CDS-L-elsbetiae_contig15133:965..1103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15133 966..1103 +
1622815616.0252626-CDS-L-elsbetiae_contig15133:2141..22801622815616.0252626-CDS-L-elsbetiae_contig15133:2141..2280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15133 2142..2280 +
1691682993.1581976-CDS-L-elsbetiae_contig15133:2141..22801691682993.1581976-CDS-L-elsbetiae_contig15133:2141..2280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15133 2142..2280 +
1622815616.0353036-CDS-L-elsbetiae_contig15133:3272..35261622815616.0353036-CDS-L-elsbetiae_contig15133:3272..3526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15133 3273..3526 +
1691682993.170946-CDS-L-elsbetiae_contig15133:3272..35261691682993.170946-CDS-L-elsbetiae_contig15133:3272..3526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15133 3273..3526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15133.3675.1

>prot_L-elsbetiae_contig15133.3675.1 ID=prot_L-elsbetiae_contig15133.3675.1|Name=mRNA_L-elsbetiae_contig15133.3675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MLLVYGTNRRDDEAEPLCRRALEISEQIYGPNHPKIATCLNNLATQVQAR
GEFEEAEGYFTRALDIGRQMYGPAHPNVATGLSNLAGLLRCQGKLDEAEP
LYRKAVEIGESVLGPGHPDLATWLNNLATLVRDRADLDAAEPLQRRALSI
GEKVLGPAHPDLGAQIINLASLLTVRG
back to top

mRNA from alignment at L-elsbetiae_contig15133:966..3526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15133.3675.1 ID=mRNA_L-elsbetiae_contig15133.3675.1|Name=mRNA_L-elsbetiae_contig15133.3675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2561bp|location=Sequence derived from alignment at L-elsbetiae_contig15133:966..3526+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTTGGTCTATGGCACGAATAGGCGAGACGACGAAGCCGAGCCGCT
GTGCCGCCGAGCCCTGGAGATCTCCGAACAGATCTACGGGCCGAACCACC
CCAAGATTGCGACGTGTCTAAACAACTTGGCGACCCAGGTGCCCGGACAA
CTAGCAGAGAGTGTCAGTGCGTGCCGGAAAGGGTGGCGTTGGAAAGATCT
CGTCGATAGCTGTCCGATAAAGTGTCGTTTCGTGTTGGCACTGCCTTCGT
TACGGAGTAATCGAACGTTGAAAATCGGTCCACCGGGGGGGAGGGGGCGA
ACTCACGCATGACTACGATACCTACAGCCTCTGCTCTTGACTGTTGATTC
TGGCTTCCTGGGGTTGTCCGGGCGTGGGCGAATACCGCTATGATGCTTGT
CACCCTTATGTCCATCTCTTGGTCCGCTTACAATAGGAATTTCCTGCCCA
GGCAGACTTCTCTCCTGTTACTTAAAGCTGTTGATTTGTTGTTGATATAC
ATATACCTTGACCTGAGCCTTTTCTAAAATGCGTTATTGAAGCGCGGAGC
AGCATCTTGGCACCTCCAAAGCGCACACTTGCCTCCGCTACATATATACT
TGCGTATTGTTTTTTCCGAACGCCAAGCATCAAGCGTTGCTGGATGTCTG
TCTCAACCGCTTTACCTTTGGCACCTCAGATGCAAACTTCACACGCTTTT
TTCGTTTCTTGTGCCTGTGCTTGGGCCGCATATCCTCCCCGCGGCCCCCA
GTACCTCAACCCAGGCTTTTACCCTTTGTGCGCCCATCCGACGTACTACT
ATCTGTTCTTTTTTTCTTCTCCCATTATTGGCATATTTGTCGTCTGCCCC
ACTGGCCCTCTTCCTCCACTACGACCTAGCTAGACGACCCAACCGGGGTC
AGACAGGAGGGGGGGGGGTAGACCCCATCCCACTGTACCCCCTCCCGGTG
CTTACTGTTTTTTCGTCGCTGCTCTCCGCACCTTTTTCGATGAAATTGTC
CTTCCCGTACCCCACCGTTGTCTCGACCAAGGCGCGCGGCTGAAACGTGG
TATGTTTGTACATACACGTGTACCCTTTCTTGTCCGTGTTCGTTGTCTTG
TACCTTTTCTCGTCCGTCCGTTGTTTCTTGTTGCCTTCCCGTTGCGTGCG
CCTATCTTTCCCTTCTCCGTCCGCAGGTGCAGGCAAGAGGGGAGTTCGAG
GAGGCGGAGGGATACTTCACGAGAGCGTTGGACATCGGCCGGCAGATGTA
CGGCCCCGCGCACCCCAACGTTGCCACGGGACTGTCCAACCTCGCCGGCC
TCTTGCGGTGCCAGGGTGAGTGTCGCACCGTCGGCGGCAGAGGAAAAAAG
AACGAGGCGATACACAGTTGGTGTATACCGTAGGTGATACAAGATGCCGC
CCCCCTCCCTAAAAGACAGATTTTCAAAGCTCAAGAGTAATATACTCCCG
GCAAGAAGAAGAGAGCCAGTGCGGAAAGGGAGTGGCGTTGGAAGGATCTA
GTCGAGAACTGTCCGACAGTGTGCCGTTTGTTTGGTGCTAGCACCCTCTT
CGTTACGGAGCAATGGAGCTCCAAAACTCGGTCCATCCAGGGGGGGTGTG
TGGTATATGTGTCACCTGCGGTATGTATGAAGCCCAGGATGAATCACCGC
TGCATACACCGGTTACGGTTGTGAAGTTGGGAGATGACACAGACCGGTTG
GCGGTTATTTTTTATTTTTTCCGCCGGGGGTGGGTGATATCTCAGCGAGG
TATCCTTGGGGGTCGGAAGAACGATCGAAGACGCAGCGCTTCCAAAAGAC
GAGAAGCACGGTTGAAAAGGTTTTGGTACATGTCAGTAGCGCCGAACACG
CAGCAGTTAGTTTTATCTGATCTGCCGCTCCTGCTTCTGTTGGAGGAGGA
GGACGCTTGCCGCTCTTATCCCAGATGGGTTTAAGCAAGGCCGTAGAAAC
GTATGAGAAGCACCTCTCGCTCCAGGGAGTTCGACTCCAACACGCGTTTA
ATGCTCTGCCATGCTTTTGCGATGACGCCGACGAAGCACGCGTCGTCGCA
TTTCCCGCTGAGGAACAAGCCGCGAAGCCGAAGTTCCGTCATTATTTTCG
CTTTTCCGGCATCCCACGAAACCAATTTGTGGAAACCCCCCCCCCCCGAG
ACAGACATGATCTGTTCCGCCATACGGGAAAAAATCGCCGCCGAACCGGC
AGCTGAACCACTGTCTGTTTTTGCTCACACGGGTTCACGGAAAAAATCGC
CACGCCGTGGCTCTACCCACTCTGCTGTGCTGGTTATCTTGTTGACACGG
CGGGCAGGCAAGCTGGATGAAGCCGAGCCGCTGTACCGCAAGGCGGTGGA
GATCGGAGAGAGTGTTCTCGGCCCGGGTCACCCCGACCTTGCCACCTGGC
TCAACAACCTCGCCACCCTCGTGCGGGATCGGGCGGACCTGGATGCCGCC
GAGCCGCTGCAGAGAAGGGCGCTGTCGATAGGGGAGAAGGTGCTGGGGCC
GGCGCACCCGGACCTCGGGGCGCAGATCATCAACCTGGCGTCGCTGCTCA
CCGTGCGAGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15133:966..3526+

>mRNA_L-elsbetiae_contig15133.3675.1 ID=mRNA_L-elsbetiae_contig15133.3675.1|Name=mRNA_L-elsbetiae_contig15133.3675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig15133:966..3526+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTTGGTCTATGGCACGAATAGGCGAGACGACGAAGCCGAGCCGCT
GTGCCGCCGAGCCCTGGAGATCTCCGAACAGATCTACGGGCCGAACCACC
CCAAGATTGCGACGTGTCTAAACAACTTGGCGACCCAGATGCTTTTGGTC
TATGGCACGAATAGGCGAGACGACGAAGCCGAGCCGCTGTGCCGCCGAGC
CCTGGAGATCTCCGAACAGATCTACGGGCCGAACCACCCCAAGATTGCGA
CGTGTCTAAACAACTTGGCGACCCAGGTGCAGGCAAGAGGGGAGTTCGAG
GAGGCGGAGGGATACTTCACGAGAGCGTTGGACATCGGCCGGCAGATGTA
CGGCCCCGCGCACCCCAACGTTGCCACGGGACTGTCCAACCTCGCCGGCC
TCTTGCGGTGCCAGGGTGCAGGCAAGAGGGGAGTTCGAGGAGGCGGAGGG
ATACTTCACGAGAGCGTTGGACATCGGCCGGCAGATGTACGGCCCCGCGC
ACCCCAACGTTGCCACGGGACTGTCCAACCTCGCCGGCCTCTTGCGGTGC
CAGGGCAAGCTGGATGAAGCCGAGCCGCTGTACCGCAAGGCGGTGGAGAT
CGGAGAGAGTGTTCTCGGCCCGGGTCACCCCGACCTTGCCACCTGGCTCA
ACAACCTCGCCACCCTCGTGCGGGATCGGGCGGACCTGGATGCCGCCGAG
CCGCTGCAGAGAAGGGCGCTGTCGATAGGGGAGAAGGTGCTGGGGCCGGC
GCACCCGGACCTCGGGGCGCAGATCATCAACCTGGCGTCGCTGCTCACCG
TGCGAGGTGCAAGCTGGATGAAGCCGAGCCGCTGTACCGCAAGGCGGTGG
AGATCGGAGAGAGTGTTCTCGGCCCGGGTCACCCCGACCTTGCCACCTGG
CTCAACAACCTCGCCACCCTCGTGCGGGATCGGGCGGACCTGGATGCCGC
CGAGCCGCTGCAGAGAAGGGCGCTGTCGATAGGGGAGAAGGTGCTGGGGC
CGGCGCACCCGGACCTCGGGGCGCAGATCATCAACCTGGCGTCGCTGCTC
ACCGTGCGAGGT
back to top