mRNA_L-elsbetiae_contig15131.3673.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15131.3673.1
Unique NamemRNA_L-elsbetiae_contig15131.3673.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15131.3673.1 vs. uniprot
Match: D8LJI6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI6_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.850e-8
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:  400 HPSFGYTSDMKARRCARHRLENMEGVKGHQRQK 498
            HPSFGY SD KARRCARHRLENMEGVKGH++++
Sbjct:  625 HPSFGYASDKKARRCARHRLENMEGVKGHRQKR 657
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15131.3673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJI6_ECTSI2.850e-881.82EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15131contigL-elsbetiae_contig15131:1021..3286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue7.3e-08
Seed eggNOG ortholog2880.D8LJI6
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size612
Cds size600
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15131.3673.1prot_L-elsbetiae_contig15131.3673.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15131 1033..3286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.8442318-UTR-L-elsbetiae_contig15131:1020..10321622815615.8442318-UTR-L-elsbetiae_contig15131:1020..1032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15131 1021..1032 +
1691682993.0588903-UTR-L-elsbetiae_contig15131:1020..10321691682993.0588903-UTR-L-elsbetiae_contig15131:1020..1032Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15131 1021..1032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.863695-CDS-L-elsbetiae_contig15131:1032..11011622815615.863695-CDS-L-elsbetiae_contig15131:1032..1101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15131 1033..1101 +
1691682993.0719192-CDS-L-elsbetiae_contig15131:1032..11011691682993.0719192-CDS-L-elsbetiae_contig15131:1032..1101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15131 1033..1101 +
1622815615.8785357-CDS-L-elsbetiae_contig15131:1944..20841622815615.8785357-CDS-L-elsbetiae_contig15131:1944..2084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15131 1945..2084 +
1691682993.0826347-CDS-L-elsbetiae_contig15131:1944..20841691682993.0826347-CDS-L-elsbetiae_contig15131:1944..2084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15131 1945..2084 +
1622815615.892386-CDS-L-elsbetiae_contig15131:2220..23861622815615.892386-CDS-L-elsbetiae_contig15131:2220..2386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15131 2221..2386 +
1691682993.0940886-CDS-L-elsbetiae_contig15131:2220..23861691682993.0940886-CDS-L-elsbetiae_contig15131:2220..2386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15131 2221..2386 +
1622815615.9079542-CDS-L-elsbetiae_contig15131:3061..32861622815615.9079542-CDS-L-elsbetiae_contig15131:3061..3286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15131 3062..3286 +
1691682993.1062682-CDS-L-elsbetiae_contig15131:3061..32861691682993.1062682-CDS-L-elsbetiae_contig15131:3061..3286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15131 3062..3286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15131.3673.1

>prot_L-elsbetiae_contig15131.3673.1 ID=prot_L-elsbetiae_contig15131.3673.1|Name=mRNA_L-elsbetiae_contig15131.3673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=200bp
MVDTRHPLCNDDQCTRQPSFGTEGDRRASYCAEHKKAGMINVLARRCQQT
GCLRHPNFGFPGDRRSSFCREHRKTGMVDIVSRHCRDPSCTRRRLYNMKG
LRPVSCSRHKLPGMIDVVSTRCQALGCFCHPSFGYTSDMKARRCARHRLE
NMEGVKGHQRQKCNLGIAAAAAVASASPASYPGPSSSASPSPPIFRSSPL
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mRNA from alignment at L-elsbetiae_contig15131:1021..3286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15131.3673.1 ID=mRNA_L-elsbetiae_contig15131.3673.1|Name=mRNA_L-elsbetiae_contig15131.3673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2266bp|location=Sequence derived from alignment at L-elsbetiae_contig15131:1021..3286+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGCGGTCGGCATGGTGGACACGCGACACCCGCTATGCAATGACGACCA
GTGCACTCGTCAGCCCAGCTTCGGCACGGAGGTGAGATGATGAAGGTCAG
AAGGTGTCAGCACTCACACGTTGCTGCAAGGTATCTGCTTAAAGCACAGC
CTTTACTTCATACTTCGTATACATTTTCACATCTGGTGTCCACTTGCAGT
ACATAGTCTTTCCAGTGCAGCTATGAAACCTGCCGTGGAAAAAGCACGTC
GTGGACCAGAAACGATAGGAGCAACATGTTTTCTTGCCACGTACGGGTCC
CGCTTCACATATGACCCAGTTCCAGAGGTTCGCCGCATTCATTGCGCTTT
CGGTTGACACCCGACAACCTTTTCTCTCTGCTGTGAAAGAGTACCAGACA
ACAAGAAAACACTTGTGGGGGCATTTGGTGTGATGTTGGACAAGTGAAGC
GCTGGAAACATTTTGGGTTGACGACGAACGCACCCGTGAAGATCTCCGAT
TAAACGATTTGTGGGCGGTAGGCATCAAATAGCAAAGAAATCCTGTGCTG
TATACACGTTTGGACTGACGAGCCGCTGTTGTCCGCTCTTCTTCTGAATA
AATGAACAGCACCTCAACCCTCGCGCCCTATCTTTTTAATAACCTCATTC
GAAAGTGCACATTCAATAGACAATTTTTCCGGTTTCACACTCTGAACCCT
CCCCGTAGATTACGCGTGTTGACCCTGGGCGCATGTTTCTCTGGGACCCG
TGTAGAGCTGGCACCAGGGCTGTCGTGGGTTCGCTCTTTCTCCACAGTAC
GCTTCCAAAACTTCACGCCGAGTTTTCCACAGTGGCGGTGTGAATATAGC
CCTTACAGATACAGCACGAAGCTCTGTTCCCGACGCCGCCTTAAACCCTA
ACCTGCCACTCTGAATCTTGCCAGGGAGACCGGCGGGCCTCGTACTGCGC
GGAGCACAAGAAGGCGGGAATGATCAACGTGCTAGCCCGCCGCTGCCAGC
AGACTGGGTGCCTCCGCCACCCCAACTTCGGGTTCCCAGGCGACAGACGT
TCTTCATTTTGCAGGTGAGATGTGTAATCCGTATGGTATCCTTGTTCTCT
CTATCTAGCTCCTAGAAGTTTCAGTTTTCGAAGCGCTCACCGCGGCAGAT
GCACTAAACCTAACCTTCGAAAACTGCCCTAATGTGTCGATGCAAACCAG
AGAGCACCGCAAGACAGGGATGGTGGACATCGTTTCCCGCCACTGCCGAG
ACCCTTCCTGTACGAGGAGGCGCCTGTACAACATGAAGGGCCTGCGCCCT
GTATCATGCAGCCGGCACAAACTCCCCGGGATGATCGATGTGGTCAGCAC
TCGTTGTCAAGCACTGGTACGATGAAGCTTAAAGCCTATCTAGATACGTG
CTCCCCATTGCAGCAGTAGTCGCATTGGTCCAGCACTCGTTTTTATCGTT
GCCGAAACAAGTGCGCGTGTTTCAATCAAGTTTCTGGTGCAGAATGCCCT
TTTTTTATGTACCTTTTCCCTCGCTTGCGCAGTGCATACGTGTTTTGCGT
CATTCCGAAACACGCCTTCCTCCACGAGGCTGGCGCGACTGATAATCGGC
GGGCTGCCTCACGATCAAAGCCGTTTGTTTTGTCTGGATGACACCCAAAA
GGGCTTCGTAGGGTAGTCGGGATCAGAGAGCAAAGCAAAGAGGGGATGGA
AAGCATATGAAAATAATTTCGTTGGATGTTTCTGCTCTTTATTCCGAAAC
ACGTCTTCCTCCGCGGGGCTGGCGCGACTGATGGTCGGTAGGCTGCCTCG
CCACCAAAGCCGGTTTGTTTGTCTGGATGATACCGAGGGCTTCGCAGGGT
AGTCGGGATCAAAGAGCAAAGCTAATAGGGGATGGATAGCACGTGAAAAT
AATTTCGTTGGATGTTCCTGCTCTGTATTCTAGGATATAGTGGATCCGCG
TCTCGTGTTGATCAGCTCGACTTGTCCACACAGGAAGCATATCGTCAACA
GTGCGCGCGCTCCCCCTCGTCCTCGTCCTTGACCTCGTCAGGGATGCTTC
TGCCATCCGTCCTTCGGCTACACATCGGACATGAAAGCTCGCCGCTGCGC
GAGGCATCGCCTTGAGAACATGGAGGGCGTCAAGGGCCACCAACGTCAGA
AGTGCAACCTCGGGATTGCCGCCGCCGCTGCCGTTGCTTCCGCCAGCCCA
GCATCGTATCCCGGTCCATCTTCTTCTGCTTCGCCCTCTCCCCCAATCTT
CCGCTCGAGCCCGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15131:1021..3286+

>mRNA_L-elsbetiae_contig15131.3673.1 ID=mRNA_L-elsbetiae_contig15131.3673.1|Name=mRNA_L-elsbetiae_contig15131.3673.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1200bp|location=Sequence derived from alignment at L-elsbetiae_contig15131:1021..3286+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGACACGCGACACCCGCTATGCAATGACGACCAGTGCACTCGTCA
GCCCAGCTTCGGCACGGAGATGGTGGACACGCGACACCCGCTATGCAATG
ACGACCAGTGCACTCGTCAGCCCAGCTTCGGCACGGAGGGAGACCGGCGG
GCCTCGTACTGCGCGGAGCACAAGAAGGCGGGAATGATCAACGTGCTAGC
CCGCCGCTGCCAGCAGACTGGGTGCCTCCGCCACCCCAACTTCGGGTTCC
CAGGCGACAGACGTTCTTCATTTTGCAGGGAGACCGGCGGGCCTCGTACT
GCGCGGAGCACAAGAAGGCGGGAATGATCAACGTGCTAGCCCGCCGCTGC
CAGCAGACTGGGTGCCTCCGCCACCCCAACTTCGGGTTCCCAGGCGACAG
ACGTTCTTCATTTTGCAGAGAGCACCGCAAGACAGGGATGGTGGACATCG
TTTCCCGCCACTGCCGAGACCCTTCCTGTACGAGGAGGCGCCTGTACAAC
ATGAAGGGCCTGCGCCCTGTATCATGCAGCCGGCACAAACTCCCCGGGAT
GATCGATGTGGTCAGCACTCGTTGTCAAGCACTGAGAGCACCGCAAGACA
GGGATGGTGGACATCGTTTCCCGCCACTGCCGAGACCCTTCCTGTACGAG
GAGGCGCCTGTACAACATGAAGGGCCTGCGCCCTGTATCATGCAGCCGGC
ACAAACTCCCCGGGATGATCGATGTGGTCAGCACTCGTTGTCAAGCACTG
GGATGCTTCTGCCATCCGTCCTTCGGCTACACATCGGACATGAAAGCTCG
CCGCTGCGCGAGGCATCGCCTTGAGAACATGGAGGGCGTCAAGGGCCACC
AACGTCAGAAGTGCAACCTCGGGATTGCCGCCGCCGCTGCCGTTGCTTCC
GCCAGCCCAGCATCGTATCCCGGTCCATCTTCTTCTGCTTCGCCCTCTCC
CCCAATCTTCCGCTCGAGCCCGCTCGGATGCTTCTGCCATCCGTCCTTCG
GCTACACATCGGACATGAAAGCTCGCCGCTGCGCGAGGCATCGCCTTGAG
AACATGGAGGGCGTCAAGGGCCACCAACGTCAGAAGTGCAACCTCGGGAT
TGCCGCCGCCGCTGCCGTTGCTTCCGCCAGCCCAGCATCGTATCCCGGTC
CATCTTCTTCTGCTTCGCCCTCTCCCCCAATCTTCCGCTCGAGCCCGCTC
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