mRNA_L-elsbetiae_contig15084.3642.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15084.3642.1
Unique NamemRNA_L-elsbetiae_contig15084.3642.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: A0A6H5L2D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D8_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 2.640e-57
Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
            VREKM+YS+SKQD+RQGLGLGFFEGEYYANV SDLTFESLVASR +G+GDQLLSEAELLKRDLNKQERASDAGMKS+AMGVIPFKV  DLRAQLQ FGSG G  DWI
Sbjct:    6 VREKMIYSTSKQDVRQGLGLGFFEGEYYANVPSDLTFESLVASRRAGSGDQLLSEAELLKRDLNKQERASDAGMKSAAMGVIPFKVKGDLRAQLQTFGSGGGDVDWI 112          
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: A0A835YV51_9STRA (ADF-H domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV51_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.690e-24
Identity = 52/107 (48.60%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
             R KMLYSSSK D+++GLGLG+F GEYYA+  S+L++ +L+ASR +     LL+E E++++++ +Q R  D   KS+AMGVIPF+  D+LR QL+AF +  G+ +W+
Sbjct:   95 TRLKMLYSSSKADVKEGLGLGYFGGEYYASEPSELSYAALLASRDTTHDGDLLTEREVIQKEMARQAR--DITAKSTAMGVIPFEATDELRRQLEAFKA--GAVNWV 197          
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: M4BW26_HYAAE (ADF-H domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BW26_HYAAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.180e-18
Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
            VR++MLYSSS+  +++ LGL +F GE++A  LS++T+ + +A+RT    D  LSE+E L ++    ER  D  +KSSAMGV+PF++  ++R +L+     +   DWI
Sbjct:   93 VRDRMLYSSSRDSLKKQLGLNYFSGEFHATELSEVTWANFLAARTKHAADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFEITQNVREKLKLLQ--DDKFDWI 195          
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: A0A225WA37_9STRA (Twinfilin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA37_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.620e-18
Identity = 45/107 (42.06%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
            VR++MLYSSS+  +++ LGL +F GE++A  LS++T+ES + +R     D  LSE+E L ++  K ER  D  +KSSAMGV+PF++  ++R +L+     +   DWI
Sbjct:   92 VRDRMLYSSSRDSLKKQLGLNYFAGEFHATELSEVTWESFLEARKKQAADAPLSESERLLKEAAKLER--DTNVKSSAMGVVPFEITQNVRDKLRLLQ--DNKFDWI 194          
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: K3WLI0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLI0_GLOUD)

HSP 1 Score: 87.4 bits (215), Expect = 2.900e-18
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
            VR+KMLYSSS++ +++ LG+ +F GE++A   SD+TFES   ++     D  LSE E L ++    ER  D  +KS+AMGVIPF++  ++R +L  F   +G  DWI
Sbjct:   93 VRDKMLYSSSRESLKKQLGMNYFVGEFHATETSDVTFESFQNAKKKHAADAPLSETERLLKETALLER--DTNVKSTAMGVIPFEITQNVREKLALFK--DGKFDWI 195          
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: A0A7S3HH81_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH81_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.140e-18
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
            VR+KMLYSSS++D+++ LGLGFF+ EY AN  SDLT+     S        +L+E+E L  +  +Q +A  A  KSSA+ V+PF +  ++  QL AF   EG+ +W+
Sbjct:   98 VRDKMLYSSSREDLKRSLGLGFFKSEYAANQRSDLTWSQYQHSLDRNFDADVLTESERLVLEEKQQVQAESAVSKSSALSVLPFAMTSEVTEQLNAFK--EGTCNWV 202          
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: H3H3Q9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H3Q9_PHYRM)

HSP 1 Score: 85.5 bits (210), Expect = 1.990e-17
Identity = 44/107 (41.12%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
            VR++MLYSSS+  +++ LGL +F GE++A  LS++T+ES + +R     D  LSE+E L ++    ER  D  +KSSAMGV+PF++  ++R +L+     +   DWI
Sbjct:  126 VRDRMLYSSSRDSLKKQLGLNYFSGEFHATELSEVTWESFLEARKKQAADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFEITQNVRDKLRLLQ--DNKFDWI 228          
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: A0A7R9YEV0_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEV0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.910e-17
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
            VR+KML+SSS+ DI+  LG   F G+YYAN   DL F    +S+ S   +  L+EAE+L+++    +  S    K+SAMGV+PF   DD  + +  F  G  S  W+
Sbjct:   95 VRQKMLFSSSRDDIKSALGRALFAGDYYANSADDLKFSQYQSSQPSAAAEAPLTEAEILRKEAATADMQSSHVTKASAMGVVPFNFTDDTLSSMDDFRDGRVS--WV 199          
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: A0A3M6VJX2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJX2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.960e-17
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
            VR++MLYSSS+  +++ LGL +F GE++A  L ++T+ES + +R     D  LSE+E L ++    ER  D  +KSSAMGV+PF++  ++R +L+     E   DWI
Sbjct:   93 VRDRMLYSSSRDSLKKQLGLNYFSGEFHATELREVTWESFLEARKKQAADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFQITQNVRDKLRLLK--ENKFDWI 195          
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Match: A0A8J5IIZ7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IIZ7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.530e-17
Identity = 44/107 (41.12%), Postives = 70/107 (65.42%), Query Frame = 1
Query:    1 VREKMLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLSEAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSSDWI 321
            VR++MLYSSS+  +++ LGL +F GE++A  LS++T+ES + +R     D  LSE+E L ++    ER  D  +KSSAMGV+PF++  ++R +L+     +   DWI
Sbjct:  839 VRDRMLYSSSRDSLKKQLGLNYFSGEFHATELSEVTWESFLEARKKQAADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFEITQNVRDKLRLLQ--DNKFDWI 941          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15084.3642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2D8_9PHAE2.640e-5786.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV51_9STRA4.690e-2448.60ADF-H domain-containing protein n=3 Tax=Tribonema ... [more]
M4BW26_HYAAE1.180e-1841.12ADF-H domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A225WA37_9STRA1.620e-1842.06Twinfilin n=1 Tax=Phytophthora megakarya TaxID=479... [more]
K3WLI0_GLOUD2.900e-1842.99Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3HH81_9STRA6.140e-1842.99Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
H3H3Q9_PHYRM1.990e-1741.12Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7R9YEV0_9STRA2.910e-1740.19Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A3M6VJX2_9STRA2.960e-1741.12Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A8J5IIZ7_9STRA3.530e-1741.12Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15084contigL-elsbetiae_contig15084:2348..3574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog272952.HpaP810727
KEGG koko:K08870
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cofilin/tropomyosin-type actin-binding protein
EggNOG OGs3Q7ZW@4776,KOG1747@1,KOG1747@2759
COG Functional cat.W
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size321
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15084.3642.1prot_L-elsbetiae_contig15084.3642.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15084 2348..3562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.3472726-CDS-L-elsbetiae_contig15084:2347..24981622815612.3472726-CDS-L-elsbetiae_contig15084:2347..2498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15084 2348..2498 -
1691682990.9322357-CDS-L-elsbetiae_contig15084:2347..24981691682990.9322357-CDS-L-elsbetiae_contig15084:2347..2498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15084 2348..2498 -
1622815612.3575807-CDS-L-elsbetiae_contig15084:3404..35621622815612.3575807-CDS-L-elsbetiae_contig15084:3404..3562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15084 3405..3562 -
1691682990.944329-CDS-L-elsbetiae_contig15084:3404..35621691682990.944329-CDS-L-elsbetiae_contig15084:3404..3562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15084 3405..3562 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.3673255-UTR-L-elsbetiae_contig15084:3562..35741622815612.3673255-UTR-L-elsbetiae_contig15084:3562..3574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15084 3563..3574 -
1691682990.9523463-UTR-L-elsbetiae_contig15084:3562..35741691682990.9523463-UTR-L-elsbetiae_contig15084:3562..3574Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15084 3563..3574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15084.3642.1

>prot_L-elsbetiae_contig15084.3642.1 ID=prot_L-elsbetiae_contig15084.3642.1|Name=mRNA_L-elsbetiae_contig15084.3642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MLYSSSKQDIRQGLGLGFFEGEYYANVLSDLTFESLVASRTSGTGDQLLS
EAELLKRDLNKQERASDAGMKSSAMGVIPFKVNDDLRAQLQAFGSGEGSS
DWI
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mRNA from alignment at L-elsbetiae_contig15084:2348..3574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15084.3642.1 ID=mRNA_L-elsbetiae_contig15084.3642.1|Name=mRNA_L-elsbetiae_contig15084.3642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1227bp|location=Sequence derived from alignment at L-elsbetiae_contig15084:2348..3574- (Laminarionema elsbetiae ELsaHSoW15)
GTGCGGGAAAAGATGCTCTACTCGTCCTCGAAGCAGGACATTCGCCAGGG GCTCGGCCTGGGCTTTTTCGAGGGAGAGTACTACGCGAACGTTCTCAGCG ACCTGACCTTCGAGAGCTTGGTGGCTAGCCGAACAAGTGGCACCGGGGAC CAGCTTCTCAGCGAGGCAGAGTGAGTGAGACGCGACGCTTAGCTGACCCC CACCCGCGTTTTTCAGCCCGCTGTCGGTGTAAACAATGGCGTGGAATGCA TGCTGCTTTTCCGCGGTGGGCCTTTGGCTACGCCAACAGCAGTGGCGTGA AATGCATGCTTTTTTTTCTGCGGTGGGCCTTTAGCTACCCTAACGCATCA CGAGGGGTAGGGTAGCCGTGCACGCGTCCGTGGGCCTTGGCTGCTGCCTG TTCCGGTCCCAGAGCGTTTTGGCCCTCCTGCTACTGCTGCTGTGGTCCAG AGCTCTTGCTGGCATGCATTTTCTTTTCGCCTTGCTGCGGGTTTAGTCAG TCGATGCTCTAAAAGCTAAACGTTGCCGTATCGTGTCGTGTCATATCGAT CGTCGCCATGCCACCATCATATCATATCAGATCATAGATAACTTCGATCG ACTCCACGGCACCCTCACCCCCACTTTTCGCGCCGTAGTGGCCACCGGCA GTTGCGGTACATCGGGATTTGCGGGCACACGTTGTTGGCACTATGAACAC CGCATACAGGAGGGCTGTATTTTCGTTCCATCTCTATTGTTTAAAAGGGT TCTAGCCCGGTGTAGGCCGGCTGTGTTTGCTCTCTACGCTCGGTATTATG ACCTCGCCTTGTGTGCTGCTGTACTGGCACATTGGGCTTTACAGAACAGA AACCTGGCACATTGGGTTTTACAGAAACATGACGCGCTGTTATGATTCAT GGGTTGTTTTGTTTCAAGCGTTTCAATCCATGTTTCAAGAGTCTAAAACT CAGCTTTCGTTTCGTTTCGCTCAAGCCACGTTCTGTTGATCGCCCTCGAC TCGTCTAATCCATTTGGTTTTTATGACGTGGACTATTGCGTGTCCATCGC TGCGTTGGCGTTTGCACCCGCTTCAGGCTCCTGAAGCGGGACCTGAACAA GCAGGAGCGGGCGAGCGACGCGGGCATGAAGTCTTCCGCCATGGGTGTCA TTCCTTTCAAGGTCAACGACGATCTGAGGGCGCAGCTCCAAGCTTTCGGC TCGGGGGAGGGGAGTTCGGACTGGATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15084:2348..3574-

>mRNA_L-elsbetiae_contig15084.3642.1 ID=mRNA_L-elsbetiae_contig15084.3642.1|Name=mRNA_L-elsbetiae_contig15084.3642.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig15084:2348..3574- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTACTCGTCCTCGAAGCAGGACATTCGCCAGGGGCTCGGCCTGGG
CTTTTTCGAGGGAGAGTACTACGCGAACGTTCTCAGCGACCTGACCTTCG
AGAGCTTGGTGGCTAGCCGAACAAGTGGCACCGGGGACCAGCTTCTCAGC
GAGGCAGAATGCTCTACTCGTCCTCGAAGCAGGACATTCGCCAGGGGCTC
GGCCTGGGCTTTTTCGAGGGAGAGTACTACGCGAACGTTCTCAGCGACCT
GACCTTCGAGAGCTTGGTGGCTAGCCGAACAAGTGGCACCGGGGACCAGC
TTCTCAGCGAGGCAGAGCTCCTGAAGCGGGACCTGAACAAGCAGGAGCGG
GCGAGCGACGCGGGCATGAAGTCTTCCGCCATGGGTGTCATTCCTTTCAA
GGTCAACGACGATCTGAGGGCGCAGCTCCAAGCTTTCGGCTCGGGGGAGG
GGAGTTCGGACTGGATTGCTCCTGAAGCGGGACCTGAACAAGCAGGAGCG
GGCGAGCGACGCGGGCATGAAGTCTTCCGCCATGGGTGTCATTCCTTTCA
AGGTCAACGACGATCTGAGGGCGCAGCTCCAAGCTTTCGGCTCGGGGGAG
GGGAGTTCGGACTGGATT
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