mRNA_L-elsbetiae_contig1503.3613.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1503.3613.1
Unique NamemRNA_L-elsbetiae_contig1503.3613.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: D7FS69_ECTSI (Vps16_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS69_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 8.110e-31
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1
Query:    1 MLADDWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLKVRA 180
            MLADDWT+LRDVQYRKIHLYDLDWA DEDR LDRCLVAVAKYGGAVAMVRDETKLLK+ A
Sbjct:    1 MLADDWTTLRDVQYRKIHLYDLDWAEDEDRHLDRCLVAVAKYGGAVAMVRDETKLLKMSA 60          
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: A0A6V1U1E5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U1E5_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 9.170e-9
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 MLADDWTSLRDVQYRKIHLYD-LDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLK 171
            M+  DW SL DVQYRK  +YD ++W GD D  LD C++  A YGG +A+VRDE KL++
Sbjct:    1 MINTDWQSLGDVQYRKWVVYDEMEW-GDFD--LDSCIICGAPYGGPLAVVRDEKKLVE 55          
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: A0A6P4XUS8_BRABE (Vacuolar protein sorting-associated protein 16 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XUS8_BRABE)

HSP 1 Score: 58.5 bits (140), Expect = 1.680e-8
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    4 LADDWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLKVRAS 183
            +  DW  L  V YRK  +Y L W    D  LD+ +VA A YGG VA++RDETKL++V+ S
Sbjct:    4 VTGDWNPLGQVFYRKQEIYTLGW---RDIDLDKFVVAAAPYGGPVALIRDETKLVRVQGS 60          
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: C3ZIW0_BRAFL (Vacuolar protein sorting-associated protein 16 homolog n=6 Tax=Branchiostoma TaxID=7737 RepID=C3ZIW0_BRAFL)

HSP 1 Score: 57.8 bits (138), Expect = 3.140e-8
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    4 LADDWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLKVRAS 183
            +  DW  L  V YRK  +Y + W    D  LD+ +VA A YGG +A++RDETKL++V+ S
Sbjct:    4 VTGDWNPLGQVFYRKQEIYSMGW---RDIDLDKFVVAAAPYGGPIALIRDETKLVRVQGS 60          
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: A0A8J9Z1U9_BRALA (VPS16 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z1U9_BRALA)

HSP 1 Score: 57.8 bits (138), Expect = 3.180e-8
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    4 LADDWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLKVRAS 183
            +  DW  L  V YRK  +Y + W    D  LD+ +VA A YGG +A++RDETKL++V+ S
Sbjct:    4 VTGDWNPLGQVFYRKQEIYSMGW---RDIDLDKFVVAAAPYGGPIALIRDETKLVRVQGS 60          
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: A0A7M7MZQ0_STRPU (Vacuolar protein sorting-associated protein 16 homolog n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7MZQ0_STRPU)

HSP 1 Score: 54.7 bits (130), Expect = 3.850e-7
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    4 LADDWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLKVRAS 183
            +  DW  L DV YRK+ LY +D    E   L +  VAVA +GG +A++RD  K+ +VR S
Sbjct:    4 VTGDWNPLGDVFYRKVELYSMDRLWQEVADLRKFKVAVAPFGGPIALMRDSNKITQVRGS 63          
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: UPI0014259083 (vacuolar protein sorting-associated protein 16 homolog n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259083)

HSP 1 Score: 53.5 bits (127), Expect = 9.850e-7
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   13 DWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLKVRAS 183
            DW  + +V +RK  LY +D    E   L +  +A A YGG +A++RD+TK+L+V+ S
Sbjct:    7 DWNPMGEVYFRKSELYSMDRKWQEIADLKKFKIAAAPYGGPIALIRDDTKILQVKGS 63          
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: A0A3A2Z9H0_9EURO (Probable vacuolar protein sorting-associated protein 16 homolog n=1 Tax=Aspergillus sclerotialis TaxID=2070753 RepID=A0A3A2Z9H0_9EURO)

HSP 1 Score: 53.1 bits (126), Expect = 1.350e-6
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   13 DWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLKVRAS 183
            +W  + D  YRKI +YD  +  DED +L+  +VA A YGGA+A++RDE+KL + +AS
Sbjct:    9 NWEKVGDSFYRKIPVYDAIF--DEDVELENYIVAGAPYGGAIALLRDESKLYRYQAS 63          
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: A9TG46_PHYPA (Protein VACUOLELESS1 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TG46_PHYPA)

HSP 1 Score: 52.8 bits (125), Expect = 1.840e-6
Identity = 25/59 (42.37%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    4 LADDWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLKVRA 180
            +A +W +L +  YRK+ +Y + W G +   L R  VA A++GG +AMVRDE+K++++RA
Sbjct:    5 IAAEWEALYNRYYRKLEVYTMCWNGID---LSRHKVACARFGGPIAMVRDESKMVQLRA 60          
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Match: A0A6A7G8V0_9CRUS (Vacuolar protein sorting-associated protein 16 homolog (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G8V0_9CRUS)

HSP 1 Score: 52.0 bits (123), Expect = 3.420e-6
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 1
Query:    1 MLADDWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVRDETKLLKVRAS 183
            M   DW  L    YRK  +Y++ W   +D  L++ ++A A +GG +A+VRDE K+L V AS
Sbjct:    1 MATSDWNQLNKCYYRKRRIYEMRW---DDVDLEKYVIAGACFGGPIALVRDERKILLVGAS 58          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1503.3613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS69_ECTSI8.110e-3191.67Vps16_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6V1U1E5_HETAK9.170e-953.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6P4XUS8_BRABE1.680e-848.33Vacuolar protein sorting-associated protein 16 hom... [more]
C3ZIW0_BRAFL3.140e-845.00Vacuolar protein sorting-associated protein 16 hom... [more]
A0A8J9Z1U9_BRALA3.180e-845.00VPS16 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A7M7MZQ0_STRPU3.850e-743.33Vacuolar protein sorting-associated protein 16 hom... [more]
UPI00142590839.850e-740.35vacuolar protein sorting-associated protein 16 hom... [more]
A0A3A2Z9H0_9EURO1.350e-647.37Probable vacuolar protein sorting-associated prote... [more]
A9TG46_PHYPA1.840e-642.37Protein VACUOLELESS1 n=1 Tax=Physcomitrium patens ... [more]
A0A6A7G8V0_9CRUS3.420e-640.98Vacuolar protein sorting-associated protein 16 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1503contigL-elsbetiae_contig1503:264..446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D7FS69
KEGG koko:K20180
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0006810,GO:0006886,GO:0007275,GO:0008092,GO:0008104,GO:0008150,GO:0009790,GO:0009792,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0030897,GO:0031090,GO:0031338,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035295,GO:0035542,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048565,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055123,GO:0060627,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0099023
EggNOG free text desc.regulation of vacuole fusion, non-autophagic
EggNOG OGsKOG2280@1,KOG2280@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.7579021-CDS-L-elsbetiae_contig1503:263..4461622815609.7579021-CDS-L-elsbetiae_contig1503:263..446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 264..446 -
1691682989.4546795-CDS-L-elsbetiae_contig1503:263..4461691682989.4546795-CDS-L-elsbetiae_contig1503:263..446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 264..446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1503.3613.1prot_L-elsbetiae_contig1503.3613.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1503 264..446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1503.3613.1

>prot_L-elsbetiae_contig1503.3613.1 ID=prot_L-elsbetiae_contig1503.3613.1|Name=mRNA_L-elsbetiae_contig1503.3613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MLADDWTSLRDVQYRKIHLYDLDWAGDEDRQLDRCLVAVAKYGGAVAMVR
DETKLLKVRAS
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mRNA from alignment at L-elsbetiae_contig1503:264..446-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1503.3613.1 ID=mRNA_L-elsbetiae_contig1503.3613.1|Name=mRNA_L-elsbetiae_contig1503.3613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig1503:264..446- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGCGGACGATTGGACAAGCCTTCGCGATGTCCAATACCGTAAGAT ACACCTGTACGACCTGGACTGGGCGGGGGATGAGGATCGGCAGCTAGACC GGTGCTTGGTGGCTGTTGCCAAGTATGGCGGAGCCGTGGCCATGGTGCGC GACGAAACGAAGCTTCTAAAGGTGAGGGCCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1503:264..446-

>mRNA_L-elsbetiae_contig1503.3613.1 ID=mRNA_L-elsbetiae_contig1503.3613.1|Name=mRNA_L-elsbetiae_contig1503.3613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig1503:264..446- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTGCGGACGATTGGACAAGCCTTCGCGATGTCCAATACCGTAAGAT
ACACCTGTACGACCTGGACTGGGCGGGGGATGAGGATCGGCAGCTAGACC
GGTGCTTGGTGGCTGTTGCCAAGTATGGCGGAGCCGTGGCCATGGTGCGC
GACGAAACGAAGCTTCTAAAGGTGAGGGCCAGCATGCTTGCGGACGATTG
GACAAGCCTTCGCGATGTCCAATACCGTAAGATACACCTGTACGACCTGG
ACTGGGCGGGGGATGAGGATCGGCAGCTAGACCGGTGCTTGGTGGCTGTT
GCCAAGTATGGCGGAGCCGTGGCCATGGTGCGCGACGAAACGAAGCTTCT
AAAGGTGAGGGCCAGC
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