mRNA_L-elsbetiae_contig15029.3612.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15029.3612.1
Unique NamemRNA_L-elsbetiae_contig15029.3612.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: D7G660_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G660_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 3.800e-135
Identity = 290/605 (47.93%), Postives = 340/605 (56.20%), Query Frame = 1
Query:    1 GVFYVGLFAGFSLSLGGGTLIDDLLGWRWAYRLAATAGFVAAVITYATVQEPKKPLGLLRQRRGYSAASAAVSTKNPVAGGGDATGGGGXXSXXXXXXXXXXXXXXXXGFRHVSSPTYSLVRREEEGREGTKPTMREYGYGE---TAGS-----ESKEDRSAGAEAGVVGAASLEDGQK----------------------------------------GLQQQLXXXXXXXXXXXLLNGSLHRPAGGA--------SGGKMQDLSEAWLGSPSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDGNAMLTSDGS--CSSSYDASFNGTQICDESYPWCVDGSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARYDSPHIFSFFAEPLAGAAAAXXXXXXXXXXXXXXXXXXLPGASTGXXXXXXXXXXGSLPSLPLHGLLGEGASVVGYDDGGGLGXXXXXXXAGGPVEFRLAAPGSTGLRVAMMWIYPGLFLASS 1641
            GV+YVGL+AGFSL+LG GTL+DDL+GW+W+Y LAA AG V A +T+ TV EP  P   +                              XX XXXXXXXXXXXXXXXX    VSSP YSLV RE  GR+    + R  GYG      GS            AG E   +                                                  GL  Q  XXXXXXXXXX       RP   +        S GK+ DLS AWL SPSLLL+C+AGG+RDAGGFVF YYLASYFSPL+DGN  LT  G   CSSSYD  +   QICDE+YPWCV+GSC  L+SSPWHD+GMPA  LE F+SWVPLVGGSLGAM+GG LSDR+A+R GTAGRLWVV+VSNA+A+PFAVGVL+APYPWCFLCLL V L+GEMWIG+++  ++ LVPRHVR+TSVALYNF ITN+SGL T LVP IR RYDS H FSFF EPL+                                        G L      GL   G +V                 A GPVE  ++  GS GL+ A++W+YPG++LASS
Sbjct:  116 GVYYVGLYAGFSLALGAGTLVDDLVGWKWSYLLAALAGAVVAALTFLTVPEPLPPREAVLMXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXSRSAVSSPVYSLVGREGRGRDSLSASARGGGYGSDRPAVGSGXXXXXXXXXXKAGTEPTWLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGLQRGXXXXXXXXXXXXXXXXXRPRRSSAYSRLLHRSRGKLSDLSAAWLDSPSLLLVCVAGGVRDAGGFVFGYYLASYFSPLLDGNPSLTQHGDDPCSSSYDVGYADDQICDEAYPWCVEGSCFRLTSSPWHDVGMPAHQLECFISWVPLVGGSLGAMIGGFLSDRVAQRLGTAGRLWVVIVSNALASPFAVGVLLAPYPWCFLCLLGVELLGEMWIGVVLAVVIALVPRHVRITSVALYNFIITNISGLSTTLVPLIRGRYDSEHTFSFFVEPLSAGGEGDA---------------------------------GRLLLSSPSGLAEAGTAVA-------------AAAAEGPVEVSVSEAGSHGLQAALLWMYPGMYLASS 666          
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: A0A6H5L2A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A6_9PHAE)

HSP 1 Score: 402 bits (1034), Expect = 2.390e-127
Identity = 298/627 (47.53%), Postives = 350/627 (55.82%), Query Frame = 1
Query:    1 GVFYVGLFAGFSLSLGGGTLIDDLLGWRWAYRLAATAGFVAAVITYATVQEPKKPLGLLRQRRGYSAASAAVSTKNPVAGGGDATGGGGXXSXXXXXXXXXXXXXXXXGFRHVSSPTYSLVRREEEGREGTKPTMREYGYGETAGSESKEDRSAGAEAG------------------------------------------------------------------------------VVGAASLEDGQKGLQQQLXXXXXXXXXXXLLNGSLHRPAGGASGGKMQDLSEAWLGSPSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDGNAMLTSDGS--CSSSYDASFNGTQICDESYPWCVDGSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARYDSPHIFSFFAEPLAGAAAAXXXXXXXXXXXXXXXXXXLPGASTGXXXXXXXXXXGSLPSLPLHGLLGEGASVVGYDDGGGLGXXXXXXXAGGPVEFRLAAPGSTGLRVAMMWIYPGLFLASS 1641
            GV+YVGL+AGFSL+LGGGTL+DDL+GW+W+Y LAA AG V A +T+ TV EP                                      X XXXXXXXXXXXXXXXX    VSSP YS+V RE  GR+    + R  GYG         DR A    G                                                                                                XXX          +  LHR     S GK+ DLS AWL SPSLLL+C+AGG+RDAGGFVF YYLASYFSPL+DGN  LT  G   CS+SYD  + G QICDE+YPWCV+GSC  L+SSPWHD+GMPA HLE F+SWVP+VGGSLGAM+GG LSDR+A+R GTAGRLWVV+VSNA+A+PFAVGVL+APYPWCF+CLL V L+GEMWIG+++  ++ LVPR VR+TSVA+YNF ITN+SGL T LVP IR RYDS H FSF  EPLAGAA  XXXXXXXXXXXXXXXXXX    S            G +      GL                    XXXXA GPVE  ++  GS GL+ A++W+YPG++LASS
Sbjct:  156 GVYYVGLYAGFSLALGGGTLVDDLVGWKWSYLLAALAGAVVAALTFLTVPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXSRPAVSSPVYSMVGREGRGRDSLSASARGEGYGS--------DRPAVGSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLQPRRSSAYSRLLHR-----SQGKLSDLSAAWLDSPSLLLVCVAGGVRDAGGFVFGYYLASYFSPLLDGNPSLTQHGDDPCSASYDVGYAGDQICDEAYPWCVEGSCFRLTSSPWHDVGMPAHHLECFISWVPVVGGSLGAMIGGFLSDRVAQRLGTAGRLWVVIVSNALASPFAVGVLLAPYPWCFVCLLGVELLGEMWIGVVLAVVIALVPRQVRITSVAMYNFIITNISGLSTTLVPLIRGRYDSEHTFSFLVEPLAGAAXXXXXXXXXXXXXXXXXXXXXXXXS------------GRMLLSSPSGLAEXXXXXX------------XXXXAEGPVEVSVSEAGSHGLQAALLWMYPGMYLASS 738          
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: A0A7S3XVU0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVU0_HETAK)

HSP 1 Score: 174 bits (441), Expect = 6.720e-46
Identity = 94/243 (38.68%), Postives = 136/243 (55.97%), Query Frame = 1
Query:  610 GKMQDLSEA------WLGSPSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDGNAMLTSDGSCSSSYDASF---NGTQICDESYPWCVDGSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARYDSPHIFSFFAEP 1311
            G M DL+        W  +P+L +  +A G R+AGG ++  Y A +F  L      L  D SCS SYDA     N  + C  SYP+C+DG CN L+S+PWH +GMP+++   +   V + GGSLG+++ G+ SD+ AK++G  GR+  + V   I+ PF  G +V  YP+CF+   +    GE W G+++TCIM  VP H R TSV L    +  L    T+LVP   A +D    + F+A P
Sbjct:    1 GTMSDLAHLKEVIAFWNQNPALWIFVIAAGFRNAGGSIWQSYQALFFDDLFS----LELDSSCSYSYDAEDSENNSVESCSSSYPYCIDGFCNALNSTPWHAVGMPSNYFAQWTFVVIIFGGSLGSLLNGVASDKAAKKNGLIGRINTLSVFILISVPFCFGAVVFEYPYCFMSSFLCYAFGEGWQGVVLTCIMEFVPGHYRATSVGLGMAVVALLGSSATVLVPWFEAMFDHYSTYEFYAAP 239          
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: W5MAW6_LEPOC (D-galactonate transporter-like n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MAW6_LEPOC)

HSP 1 Score: 143 bits (360), Expect = 2.320e-33
Identity = 79/211 (37.44%), Postives = 113/211 (53.55%), Query Frame = 1
Query:  646 SPSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDGNAMLTSDGSCSSSYDASFNGTQICDESYPWCVDGSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARYD 1278
            S SLLL+CLAG +R+AGG+V++Y   +YF+                                               P  DIG        ++SW+PLVGGS G + GG +SDR+ ++ G   R+WV+VVS  +A PF +GVL+ P P+CFL L+  ++IGEMW+G+ +  ++ LVP  VR +SVA Y F ITN+ G   LLVP +   Y+
Sbjct:  281 SLSLLLLCLAGSVRNAGGYVWAYNAQNYFNLYF--------------------------------------------PNEDIGR-------WLSWIPLVGGSFGVVFGGFISDRVVRKRGLTARIWVLVVSQILAAPFLIGVLILPPPYCFLLLIPANIIGEMWVGVALAILVELVPSAVRTSSVAFYLFIITNIGGNAPLLVPLLAKLYN 440          
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: A0A444V2G1_ACIRT (Protein spinster-like 1 n=3 Tax=Acipenseroidei TaxID=186622 RepID=A0A444V2G1_ACIRT)

HSP 1 Score: 142 bits (358), Expect = 4.100e-33
Identity = 79/210 (37.62%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  646 SPSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDGNAMLTSDGSCSSSYDASFNGTQICDESYPWCVDGSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARY 1275
            SPSLLL+CLAG IR+AGG+V++Y    YFS                                               P  D+G        ++SW+PLVGGS G + GG +SDR+ K+ G   R+WV+V+S  +A PF VGVL    P+ FL L+  ++IGEMW+G+ +  ++ LVP  +R ++VA Y F ITN+ G   LLVPP+ + Y
Sbjct:  277 SPSLLLLCLAGSIRNAGGYVWAYNAQIYFSQYF--------------------------------------------PGEDVGC-------WLSWIPLVGGSFGVLFGGFISDRVVKKRGLPARVWVLVISQIVAAPFLVGVLWLSPPYAFLLLIPANIIGEMWVGVTLAIVVELVPPVIRTSAVAFYLFIITNIGGNMPLLVPPLTSLY 435          
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: A0A7D9LGT6_PARCT (Spinster homolog 1-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LGT6_PARCT)

HSP 1 Score: 135 bits (341), Expect = 4.950e-33
Identity = 77/222 (34.68%), Postives = 114/222 (51.35%), Query Frame = 1
Query:  646 SPSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDGNAMLTSDGSCSSSYDASFNGTQICDESYPWCVDGSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARYDSPHIFSFFAEP 1311
            SPSLL++CLAG IR+AGG+V++Y    YF                               E Y                     P  +L  ++SW+PLVGGS+G ++GG++SD++ K  G   R+WV+V S  I  PFA G L    P+CFL L++ ++IGEMWIG+ +T ++ LVP+ +R + VA Y F I+ + G   L VPP++    S  +  +   P
Sbjct:   10 SPSLLILCLAGSIRNAGGYVWAYNTQPYF-------------------------------EKY--------------------YPDVNLGYWMSWIPLVGGSMGVLLGGVISDQVIKNRGLYARVWVLVFSQLIGAPFAAGALFLHPPYCFLSLIVANIIGEMWIGVALTVVVELVPKALRTSIVAYYLFIISIIGGNMPLAVPPLKEATGSLRVALYLLYP 180          
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: A0A3S0ZD38_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZD38_ELYCH)

HSP 1 Score: 140 bits (354), Expect = 1.540e-32
Identity = 82/218 (37.61%), Postives = 117/218 (53.67%), Query Frame = 1
Query:  625 LSEAWLGSPSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDGNAMLTSDGSCSSSYDASFNGTQICDESYPWCVDGSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARYD 1278
            +S+A+L SPSLLL+CLAG IR+AGG+V++Y    YF                    DA                              +G+       ++SW+PLVGGSLG + GG +SDRI KR G   R++V+V S  +A PFA G L    PW F+ L+  ++IGEMW+G+ +   + LVP  VR ++VA+Y F I+N+ G   LLVPPI+  ++
Sbjct:  273 ISKAFL-SPSLLLLCLAGSIRNAGGYVWAYNTQPYF--------------------DA------------------------------VGVSKETTGSYMSWIPLVGGSLGVLFGGFISDRIVKRRGLYARIFVLVASQFVAAPFAAGALFLDVPWSFISLIPANIIGEMWVGVTLAVGVELVPAQVRTSAVAVYLFIISNIGGNVPLLVPPIQHSFE 439          
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: A0A8J1U014_OWEFU (Ofus.G082900 protein n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U014_OWEFU)

HSP 1 Score: 140 bits (352), Expect = 2.800e-32
Identity = 73/211 (34.60%), Postives = 108/211 (51.18%), Query Frame = 1
Query:  649 PSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDGNAMLTSDGSCSSSYDASFNGTQICDESYPWCVDGSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARYDS 1281
            PSLLL+CLAG IR+AGG+V++Y    YF                                                    I      +  F+SW+PL+GGSLGA++GG +SDR+  R G   R+ V+V+S  +A PFA G L    PWC++ L+  +++GEMW+G+ +  ++ LVP  VR  ++A Y F I+N+ G   LLVPPI+  + +
Sbjct:  278 PSLLLLCLAGSIRNAGGYVWAYNTQPYF--------------------------------------------------ESIHQTRDQIAKFMSWIPLIGGSLGAVLGGFISDRVVTRRGPTARIMVLVISQLVAAPFAAGALFLNPPWCYISLIPANIVGEMWVGVTLAVVIELVPWSVRTGAIAFYLFIISNIGGNVPLLVPPIQKAFQN 438          
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: UPI001CFB9320 (uncharacterized protein LOC122790598 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFB9320)

HSP 1 Score: 138 bits (347), Expect = 3.300e-32
Identity = 78/210 (37.14%), Postives = 109/210 (51.90%), Query Frame = 1
Query:  646 SPSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDGNAMLTSDGSCSSSYDASFNGTQICDESYPWCVDGSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARY 1275
            SPSLLL+CLAG IR+AGG+V++Y    YF                                                   ++  P + + L++SW+P+VGGS G + GG +SDR+ KR G   R+WV+V+S  IA PF VG L    P+ FL L+   +IGEMW+G+ +  ++ LVP  VR ++VA Y F ITN+ G   LLVPP+   Y
Sbjct:  124 SPSLLLLCLAGSIRNAGGYVWAYNAPLYF---------------------------------------------------NLYYPETDVGLWLSWIPMVGGSFGVLFGGFISDRVVKRKGIHARIWVLVLSQMIAAPFLVGALWFSPPYSFLILIPAYIIGEMWVGVTLAILVELVPPVVRTSAVAFYLFIITNIGGNVPLLVPPLTTLY 282          
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Match: A0A7S4DD60_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD60_HETAK)

HSP 1 Score: 135 bits (340), Expect = 5.940e-32
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 1
Query:  850 GSCNTLSSSPWHDIGMPASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIATPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSVALYNFFITNLSGLCTLLVPPIRARYDSPHI 1290
            G C  L+ +PWH+ GMP +  EL++SW P+V GS+G + GG +SD   K+HG   R+WV++V   +ATPFA G LV  YP+CF+   +  LIGE W+G+ +  I+   P ++R TSVA++ F  TN+ G      P +   + + ++
Sbjct:    1 GGCARLADAPWHNRGMPVARFELYISWSPVVAGSIGVLFGGWVSDHYVKKHGQVARIWVIIVLTLLATPFAAGTLVLDYPFCFVSHFLCLLIGEGWMGVALAMILDCSPPNIRATSVAIFLFIATNIGGNLVSFFPLLTGFFSNGNV 147          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15029.3612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G660_ECTSI3.800e-13547.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2A6_9PHAE2.390e-12747.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XVU0_HETAK6.720e-4638.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W5MAW6_LEPOC2.320e-3337.44D-galactonate transporter-like n=2 Tax=Lepisosteus... [more]
A0A444V2G1_ACIRT4.100e-3337.62Protein spinster-like 1 n=3 Tax=Acipenseroidei Tax... [more]
A0A7D9LGT6_PARCT4.950e-3334.68Spinster homolog 1-like n=2 Tax=Paramuricea clavat... [more]
A0A3S0ZD38_ELYCH1.540e-3237.61Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A8J1U014_OWEFU2.800e-3234.60Ofus.G082900 protein n=2 Tax=Owenia fusiformis Tax... [more]
UPI001CFB93203.300e-3237.14uncharacterized protein LOC122790598 n=1 Tax=Proto... [more]
A0A7S4DD60_HETAK5.940e-3240.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15029contigL-elsbetiae_contig15029:29..3586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score424.9
Seed ortholog evalue5.8e-116
Seed eggNOG ortholog2880.D7G660
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.sphingolipid transporter activity
EggNOG OGsCOG0477@1,KOG1330@2759
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-11_005290.1
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1641
Cds size1641
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15029.3612.1prot_L-elsbetiae_contig15029.3612.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15029 29..3586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.6141942-CDS-L-elsbetiae_contig15029:28..5361622815609.6141942-CDS-L-elsbetiae_contig15029:28..536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15029 29..536 -
1691682989.3951247-CDS-L-elsbetiae_contig15029:28..5361691682989.3951247-CDS-L-elsbetiae_contig15029:28..536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15029 29..536 -
1622815609.631482-CDS-L-elsbetiae_contig15029:1513..16501622815609.631482-CDS-L-elsbetiae_contig15029:1513..1650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15029 1514..1650 -
1691682989.4067385-CDS-L-elsbetiae_contig15029:1513..16501691682989.4067385-CDS-L-elsbetiae_contig15029:1513..1650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15029 1514..1650 -
1622815609.6493475-CDS-L-elsbetiae_contig15029:2196..23761622815609.6493475-CDS-L-elsbetiae_contig15029:2196..2376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15029 2197..2376 -
1691682989.414621-CDS-L-elsbetiae_contig15029:2196..23761691682989.414621-CDS-L-elsbetiae_contig15029:2196..2376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15029 2197..2376 -
1622815609.6673086-CDS-L-elsbetiae_contig15029:2770..35861622815609.6673086-CDS-L-elsbetiae_contig15029:2770..3586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15029 2771..3586 -
1691682989.42245-CDS-L-elsbetiae_contig15029:2770..35861691682989.42245-CDS-L-elsbetiae_contig15029:2770..3586Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15029 2771..3586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15029.3612.1

>prot_L-elsbetiae_contig15029.3612.1 ID=prot_L-elsbetiae_contig15029.3612.1|Name=mRNA_L-elsbetiae_contig15029.3612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=547bp
GVFYVGLFAGFSLSLGGGTLIDDLLGWRWAYRLAATAGFVAAVITYATVQ
EPKKPLGLLRQRRGYSAASAAVSTKNPVAGGGDATGGGGGGSGGGSGGGS
GGGSGGGSGFRHVSSPTYSLVRREEEGREGTKPTMREYGYGETAGSESKE
DRSAGAEAGVVGAASLEDGQKGLQQQLQQQQQQQQQQQLLNGSLHRPAGG
ASGGKMQDLSEAWLGSPSLLLICLAGGIRDAGGFVFSYYLASYFSPLMDG
NAMLTSDGSCSSSYDASFNGTQICDESYPWCVDGSCNTLSSSPWHDIGMP
ASHLELFVSWVPLVGGSLGAMMGGILSDRIAKRHGTAGRLWVVVVSNAIA
TPFAVGVLVAPYPWCFLCLLMVSLIGEMWIGIMVTCIMTLVPRHVRVTSV
ALYNFFITNLSGLCTLLVPPIRARYDSPHIFSFFAEPLAGAAAAGAATVT
AAAAAGASSWAALPGASTGGGDGGGGGSGGSLPSLPLHGLLGEGASVVGY
DDGGGLGGDGLGGGAGGPVEFRLAAPGSTGLRVAMMWIYPGLFLASS
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mRNA from alignment at L-elsbetiae_contig15029:29..3586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15029.3612.1 ID=mRNA_L-elsbetiae_contig15029.3612.1|Name=mRNA_L-elsbetiae_contig15029.3612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3558bp|location=Sequence derived from alignment at L-elsbetiae_contig15029:29..3586- (Laminarionema elsbetiae ELsaHSoW15)
GGTGTCTTCTACGTGGGCCTCTTCGCGGGCTTCAGCCTGTCCCTGGGAGG GGGCACCCTGATCGACGACCTCCTGGGCTGGAGGTGGGCCTACAGACTGG CGGCGACGGCGGGCTTCGTTGCCGCCGTCATCACCTACGCCACGGTGCAG GAGCCCAAGAAGCCGCTCGGCCTCTTGCGGCAGCGCCGGGGCTACTCGGC GGCGAGTGCCGCCGTCTCGACGAAAAACCCCGTCGCGGGGGGGGGTGACG CGACTGGCGGCGGCGGCGGCGGCAGCGGCGGTGGTAGCGGCGGCGGTAGC GGCGGCGGTAGCGGCGGCGGTAGCGGCTTCCGTCACGTCTCGTCTCCCAC GTACTCTCTGGTGCGCAGGGAAGAGGAGGGAAGGGAGGGCACGAAACCCA CCATGAGGGAGTACGGGTACGGGGAGACGGCGGGCAGCGAGAGCAAGGAG GACCGCAGCGCGGGGGCGGAGGCGGGGGTGGTGGGAGCGGCATCGCTGGA GGACGGGCAGAAAGGGCTCCAGCAGCAGCTTCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGTTGCTGAACGGCTCGCTCCACCGGCCCGCAGGCGGA GCGAGCGGGGGCAAGATGCAGGACCTGTCGGAGGCGTGGCTCGGGTCGCC GTCGCTCCTGCTCATCTGCCTGGCCGGCGGCATTCGCGACGCGGGCGGGT TCGTGTTTTCGTACTACCTGGCGAGCTACTTCAGCCCCCTGATGGACGGG AACGCGATGCTGACGAGCGATGGCTCCTGCTCGTCCTCGTACGACGCTAG CTTCAACGGTACCCAGGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGTGT GTGTTTGGGGGGGGAGGTTTTTAATGGGCATTGGACACGCTCACCAGTCC ACCGACGAGAAAGCGTCAGTCTTTAGCGGGTAAAAAAAACAGTGAGTGTG TGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAG AGAGCGTCAGTGTGTGGGGTGGTGCGGTGGTGGCAGTGGCGGCGGTGGCG GTAGTGTTTTTTTGCTTTCTCGCGACGTCCCTAGTGCTACTTAGCAGTTC TGAATCACGAGTGTGCGCCACGGTAGGATCACGGTCTATCATCGCGTACA TATATACATCCATACATAAATGACGACGACGACGACGACGGCGACGACCA ATGACGACAGATTTGCGACGAGTCCTACCCGTGGTGCGTGGATGGCTCCT GCAACACGCTCTCCAGCTCCCCGTGGCACGACATCGGCATGCCGGCCTCG CACCTGGAGCTGTTCGTGTCCTGGGTGCCGCTGGTCGGGGGCTCCCTCGG GGCTATGATGGGCGGCATCTTGTCCGACCGCATCGCAAAGGTGAGCTTTT GCTGCAGATGTAGCTCGGCAAGATAAACGGCCCTCTTGCTTGTTCTGGGG GCAGGGACGGGGAGGGGGGAGGGGAGAGGGGGCCCCGGTTTCACTTTTTT TCCACCCAGGTTGCGTCCAGGCCCTCCTTGCCGTGCGGGTGCTGCTTGGG CCTATCTACCCGCCCCCCCCCCGTGCGCGCCCGCCCCAAGGGTGCACAGG TCATGTTTTGTGACGCCCAGATCATTTTTGAAGGGAGGAGCGGCATGTGG TCGCCGCCCGGTGCAGTGTTGGCACCCCAGCCCCCCCTGCCGTTATGCGT CGATTAAGCTTCAGCCGCGGATGGCTCCATGGAGTAAATTACGCCTTGTT TTTTTCACGGGCGCGTTGACAGGTCATGCAGGCGAGCCTTGTGTGTATCG GGCGCATTTTGCTGGTCTCTAGTAGAAGTATACGCAAGCGCCACCGTGGC TGTACCGCACACAAAACTTCCGGCGAGCAAAAAACGCTTTTTGTGTCCGT GTCGTTCTTGGTGCTGTTTTTCCTCCTTCCCTCCAGCGGCACGGCACGGC GGGGCGGTTGTGGGTGGTGGTGGTGTCGAACGCCATAGCGACGCCGTTCG CCGTCGGCGTCCTCGTCGCGCCGTACCCGTGGTGCTTCCTCTGCCTCCTC ATGGTGTCCCTCATCGGGGAGATGTGAGTGCGGGTGCACGACTGGGCTGT TTTCACCTCTTGCATGAAAGGAGCCCTCTCTGTGTGACCACGGTTCAGTG CTCCTGTCTGGCAAGATGGTGCCCTCGTGGCAAGGAAGGAGCCCATCGAG CACTGGAAATAAATGTGAAGAAGAAGAAGAAGACAATGATGGCTCTGTTT CTCGCGTTATGTTTGTTTGGTGTAAGTAAAGCGCGGGGGTGGAGCTATTT TCGGAGACGGGGTTTCGTGTTTCGATAAAAACGTCGTGAGGGCTCCTCTT TGCTGTTTTGTCTCTGCTGAGGGCCCCTGTCTTGTCGTGTGGTGGTGGTA GTGGCATCCTTCATAGGAGCCTTTGAGCGGATCCCCGCTTGCTAGTCGGT GTGATGCCGGTCCGCTTTAGCCCCGCTTTTGTGTGTCGACTGTGTCGACT GTGTCGACCACTTGCAGCAGCTGGTGCTGCAGTACCGTAGATGACACAAT ATACCACACCCCCTGGACCGACTTTTATAGAGCTCCATTACTCCGTAAGG AAGAGGGTGCCAGCACCAAACGACGCATTTTCGGACAGCCCTCGACTATT CTAGATATTTCCAACGCCACCCCCTTTCGGCACTGGCATTCTTCTTGCTG GGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGCATTTTGTGT CACCTTCGGTAACGTTGCATGTGTATCGCCCGTTGTATCTGTAAGTCATG GGGCGAGATCCCCGCCTGGCCCGAATCTTTCTTGCTGGTGCTCATCTGAT GTCGTAACCCCCCCCTTTGAAACTGTCGTACATATCGCAAGCAAGCGTAC GGCGCCCCCGCCCCCAAGCCCTGCTACTCTCTTGCTCTCGCCACATAGAC GCCCGCATTTGTTGTTGCTTTCTGGGTCGCCCCATGTCCATTAGCCCATG TAGTAGTAGGTTTATCAACCGCGGGGACCCTCCTTGACACGCGACGGCAG GTGGATCGGGATCATGGTGACCTGCATCATGACCCTGGTGCCCCGACACG TCCGCGTCACGAGCGTCGCCCTGTACAACTTCTTCATCACCAACCTGAGC GGCCTCTGCACGCTACTCGTGCCGCCGATACGCGCGCGGTACGACTCCCC GCACATCTTCAGTTTCTTCGCGGAGCCGCTCGCGGGGGCCGCGGCCGCCG GCGCGGCAACGGTCACCGCCGCCGCCGCCGCCGGCGCGTCATCCTGGGCC GCCTTGCCTGGCGCCTCCACCGGCGGTGGGGACGGCGGCGGTGGCGGAAG CGGCGGCAGTCTCCCGTCCTTGCCTCTGCATGGCCTTCTTGGAGAGGGGG CGTCGGTGGTCGGGTATGACGATGGGGGAGGGCTGGGCGGTGACGGGTTA GGCGGTGGGGCTGGGGGTCCCGTGGAGTTCAGGTTGGCGGCGCCGGGATC CACCGGCCTGCGCGTGGCGATGATGTGGATCTACCCAGGGCTGTTTTTGG CGTCGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15029:29..3586-

>mRNA_L-elsbetiae_contig15029.3612.1 ID=mRNA_L-elsbetiae_contig15029.3612.1|Name=mRNA_L-elsbetiae_contig15029.3612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3282bp|location=Sequence derived from alignment at L-elsbetiae_contig15029:29..3586- (Laminarionema elsbetiae ELsaHSoW15)
GGTGTCTTCTACGTGGGCCTCTTCGCGGGCTTCAGCCTGTCCCTGGGAGG
GGGCACCCTGATCGACGACCTCCTGGGCTGGAGGTGGGCCTACAGACTGG
CGGCGACGGCGGGCTTCGTTGCCGCCGTCATCACCTACGCCACGGTGCAG
GAGCCCAAGAAGCCGCTCGGCCTCTTGCGGCAGCGCCGGGGCTACTCGGC
GGCGAGTGCCGCCGTCTCGACGAAAAACCCCGTCGCGGGGGGGGGTGACG
CGACTGGCGGCGGCGGCGGCGGCAGCGGCGGTGGTAGCGGCGGCGGTAGC
GGCGGCGGTAGCGGCGGCGGTAGCGGCTTCCGTCACGTCTCGTCTCCCAC
GTACTCTCTGGTGCGCAGGGAAGAGGAGGGAAGGGAGGGCACGAAACCCA
CCATGAGGGAGTACGGGTACGGGGAGACGGCGGGCAGCGAGAGCAAGGAG
GACCGCAGCGCGGGGGCGGAGGCGGGGGTGGTGGGAGCGGCATCGCTGGA
GGACGGGCAGAAAGGGCTCCAGCAGCAGCTTCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGTTGCTGAACGGCTCGCTCCACCGGCCCGCAGGCGGA
GCGAGCGGGGGCAAGATGCAGGACCTGTCGGAGGCGTGGCTCGGGTCGCC
GTCGCTCCTGCTCATCTGCCTGGCCGGCGGCATTCGCGACGCGGGCGGGT
TCGTGTTTTCGTACTACCTGGCGAGCTACTTCAGCCCCCTGATGGACGGG
AACGCGATGCTGACGAGCGATGGCTCCTGCTCGTCCTCGTACGACGCTAG
CTTCAACGGTACCCAGGGTGTCTTCTACGTGGGCCTCTTCGCGGGCTTCA
GCCTGTCCCTGGGAGGGGGCACCCTGATCGACGACCTCCTGGGCTGGAGG
TGGGCCTACAGACTGGCGGCGACGGCGGGCTTCGTTGCCGCCGTCATCAC
CTACGCCACGGTGCAGGAGCCCAAGAAGCCGCTCGGCCTCTTGCGGCAGC
GCCGGGGCTACTCGGCGGCGAGTGCCGCCGTCTCGACGAAAAACCCCGTC
GCGGGGGGGGGTGACGCGACTGGCGGCGGCGGCGGCGGCAGCGGCGGTGG
TAGCGGCGGCGGTAGCGGCGGCGGTAGCGGCGGCGGTAGCGGCTTCCGTC
ACGTCTCGTCTCCCACGTACTCTCTGGTGCGCAGGGAAGAGGAGGGAAGG
GAGGGCACGAAACCCACCATGAGGGAGTACGGGTACGGGGAGACGGCGGG
CAGCGAGAGCAAGGAGGACCGCAGCGCGGGGGCGGAGGCGGGGGTGGTGG
GAGCGGCATCGCTGGAGGACGGGCAGAAAGGGCTCCAGCAGCAGCTTCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCTGAACGGCTCGCTCCA
CCGGCCCGCAGGCGGAGCGAGCGGGGGCAAGATGCAGGACCTGTCGGAGG
CGTGGCTCGGGTCGCCGTCGCTCCTGCTCATCTGCCTGGCCGGCGGCATT
CGCGACGCGGGCGGGTTCGTGTTTTCGTACTACCTGGCGAGCTACTTCAG
CCCCCTGATGGACGGGAACGCGATGCTGACGAGCGATGGCTCCTGCTCGT
CCTCGTACGACGCTAGCTTCAACGGTACCCAGATTTGCGACGAGTCCTAC
CCGTGGTGCGTGGATGGCTCCTGCAACACGCTCTCCAGCTCCCCGTGGCA
CGACATCGGCATGCCGGCCTCGCACCTGGAGCTGTTCGTGTCCTGGGTGC
CGCTGGTCGGGGGCTCCCTCGGGGCTATGATGGGCGGCATCTTGTCCGAC
CGCATCGCAAAGATTTGCGACGAGTCCTACCCGTGGTGCGTGGATGGCTC
CTGCAACACGCTCTCCAGCTCCCCGTGGCACGACATCGGCATGCCGGCCT
CGCACCTGGAGCTGTTCGTGTCCTGGGTGCCGCTGGTCGGGGGCTCCCTC
GGGGCTATGATGGGCGGCATCTTGTCCGACCGCATCGCAAAGCGGCACGG
CACGGCGGGGCGGTTGTGGGTGGTGGTGGTGTCGAACGCCATAGCGACGC
CGTTCGCCGTCGGCGTCCTCGTCGCGCCGTACCCGTGGTGCTTCCTCTGC
CTCCTCATGGTGTCCCTCATCGGGGAGATCGGCACGGCACGGCGGGGCGG
TTGTGGGTGGTGGTGGTGTCGAACGCCATAGCGACGCCGTTCGCCGTCGG
CGTCCTCGTCGCGCCGTACCCGTGGTGCTTCCTCTGCCTCCTCATGGTGT
CCCTCATCGGGGAGATGTGGATCGGGATCATGGTGACCTGCATCATGACC
CTGGTGCCCCGACACGTCCGCGTCACGAGCGTCGCCCTGTACAACTTCTT
CATCACCAACCTGAGCGGCCTCTGCACGCTACTCGTGCCGCCGATACGCG
CGCGGTACGACTCCCCGCACATCTTCAGTTTCTTCGCGGAGCCGCTCGCG
GGGGCCGCGGCCGCCGGCGCGGCAACGGTCACCGCCGCCGCCGCCGCCGG
CGCGTCATCCTGGGCCGCCTTGCCTGGCGCCTCCACCGGCGGTGGGGACG
GCGGCGGTGGCGGAAGCGGCGGCAGTCTCCCGTCCTTGCCTCTGCATGGC
CTTCTTGGAGAGGGGGCGTCGGTGGTCGGGTATGACGATGGGGGAGGGCT
GGGCGGTGACGGGTTAGGCGGTGGGGCTGGGGGTCCCGTGGAGTTCAGGT
TGGCGGCGCCGGGATCCACCGGCCTGCGCGTGGCGATGATGTGGATCTAC
CCAGGGCTGTTTTTGGCGTCGTCCGTGGATCGGGATCATGGTGACCTGCA
TCATGACCCTGGTGCCCCGACACGTCCGCGTCACGAGCGTCGCCCTGTAC
AACTTCTTCATCACCAACCTGAGCGGCCTCTGCACGCTACTCGTGCCGCC
GATACGCGCGCGGTACGACTCCCCGCACATCTTCAGTTTCTTCGCGGAGC
CGCTCGCGGGGGCCGCGGCCGCCGGCGCGGCAACGGTCACCGCCGCCGCC
GCCGCCGGCGCGTCATCCTGGGCCGCCTTGCCTGGCGCCTCCACCGGCGG
TGGGGACGGCGGCGGTGGCGGAAGCGGCGGCAGTCTCCCGTCCTTGCCTC
TGCATGGCCTTCTTGGAGAGGGGGCGTCGGTGGTCGGGTATGACGATGGG
GGAGGGCTGGGCGGTGACGGGTTAGGCGGTGGGGCTGGGGGTCCCGTGGA
GTTCAGGTTGGCGGCGCCGGGATCCACCGGCCTGCGCGTGGCGATGATGT
GGATCTACCCAGGGCTGTTTTTGGCGTCGTCC
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