mRNA_L-elsbetiae_contig150.3600.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig150.3600.1
Unique NamemRNA_L-elsbetiae_contig150.3600.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig150.3600.1 vs. uniprot
Match: D7FPK0_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK0_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 7.900e-46
Identity = 98/128 (76.56%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    1 RWARVSKVFILAGVIVGVILLASFDFLESSRQFFYYLLSFMILVYYTSQVLVLFMENALRDVALVNLAFKSLHLLIGFVIMIPVLLLSFFPIFVDLQTRMLFNEDFSQRFSIAKIFARQNDRTKVKKN 384
            RWAR+SK+FIL GVIVGVI+L   D LES RQF +Y+LSF+IL+YY SQ++VLFME+ALR+VALVNLAFKS+HL+ G VI+ PVLLLSFFP+FVDLQTRMLFNEDFSQRFSIAKIFARQ++R  VKKN
Sbjct: 1803 RWARLSKLFILVGVIVGVIVLTDLDILESIRQFIFYILSFVILIYYVSQIVVLFMEDALRNVALVNLAFKSVHLITGIVIIAPVLLLSFFPLFVDLQTRMLFNEDFSQRFSIAKIFARQSNRRHVKKN 1930
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BLAST of mRNA_L-elsbetiae_contig150.3600.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.280e-7
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:  205 FKSLHLLIGFVIMIPVLLLSFFPIFVDLQTRMLFNEDFSQRFSIAKIFARQNDRTKVK 378
            ++++HL IG VIMIP LL++FFP     QTRM+FN++FS RF+ AK+FA + +R + +
Sbjct: 1866 YRAVHLTIGLVIMIPTLLVAFFPFMTHFQTRMMFNQNFSARFTSAKLFATERERQQAR 1923
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BLAST of mRNA_L-elsbetiae_contig150.3600.1 vs. uniprot
Match: A0A6H5KMI5_9PHAE (GT48 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 8.010e-7
Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:  205 FKSLHLLIGFVIMIPVLLLSFFPIFVDLQTRMLFNEDFSQRFSIAKIFARQNDRTKVK 378
            ++++HL IG VIMIP +L++FFP     QTRM+FN++FS RF+ AK+FA + +R + +
Sbjct:  424 YRAVHLTIGLVIMIPTMLVAFFPFMTPFQTRMMFNQNFSARFTSAKLFATERERQQAR 481
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig150.3600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPK0_ECTSI7.900e-4676.561,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
D7FXN7_ECTSI7.280e-750.001,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KMI5_9PHAE8.010e-748.28GT48 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig150contigL-elsbetiae_contig150:51293..54385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue1.6e-43
Seed eggNOG ortholog2880.D7FPK0
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1920
Cds size390
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig150.3600.1prot_L-elsbetiae_contig150.3600.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig150 52823..54385 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.3377602-UTR-L-elsbetiae_contig150:51292..528221622815608.3377602-UTR-L-elsbetiae_contig150:51292..52822Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig150 51293..52822 -
1691682988.615679-UTR-L-elsbetiae_contig150:51292..528221691682988.615679-UTR-L-elsbetiae_contig150:51292..52822Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig150 51293..52822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.3543327-CDS-L-elsbetiae_contig150:52822..528861622815608.3543327-CDS-L-elsbetiae_contig150:52822..52886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 52823..52886 -
1691682988.6270118-CDS-L-elsbetiae_contig150:52822..528861691682988.6270118-CDS-L-elsbetiae_contig150:52822..52886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 52823..52886 -
1622815608.3657165-CDS-L-elsbetiae_contig150:53264..534941622815608.3657165-CDS-L-elsbetiae_contig150:53264..53494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 53265..53494 -
1691682988.636678-CDS-L-elsbetiae_contig150:53264..534941691682988.636678-CDS-L-elsbetiae_contig150:53264..53494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 53265..53494 -
1622815608.3791902-CDS-L-elsbetiae_contig150:54289..543851622815608.3791902-CDS-L-elsbetiae_contig150:54289..54385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 54290..54385 -
1691682988.646761-CDS-L-elsbetiae_contig150:54289..543851691682988.646761-CDS-L-elsbetiae_contig150:54289..54385Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 54290..54385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig150.3600.1

>prot_L-elsbetiae_contig150.3600.1 ID=prot_L-elsbetiae_contig150.3600.1|Name=mRNA_L-elsbetiae_contig150.3600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
RWARVSKVFILAGVIVGVILLASFDFLESSRQFFYYLLSFMILVYYTSQV
LVLFMENALRDVALVNLAFKSLHLLIGFVIMIPVLLLSFFPIFVDLQTRM
LFNEDFSQRFSIAKIFARQNDRTKVKKNA*
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mRNA from alignment at L-elsbetiae_contig150:51293..54385-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig150.3600.1 ID=mRNA_L-elsbetiae_contig150.3600.1|Name=mRNA_L-elsbetiae_contig150.3600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3093bp|location=Sequence derived from alignment at L-elsbetiae_contig150:51293..54385- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGGGCTCGCGTGTCGAAGGTGTTTATCCTGGCGGGCGTGATCGTGGG
CGTGATCCTGCTCGCGTCGTTCGACTTCCTGGAGAGCTCACGCCAGGTAA
GTCATTTATTTGCGCTGAAGGAGCGAGATGTGTCGGAGCAAGTGAACTGC
TCTGCATGCAGCCTTTTGGTAGCGTTTTTACACAGTCGGTACGGGGTCAC
AAAGCCGTCCGGATGTCTGACGCGCTTAGGGTTAGACACGGACGTGTGTG
CACGCACGCATTCCCAAACGTGCCAGCCTGTCAGCTGAATGCCAACGATA
CCATTCGCAAAAGCCGCTCCGGCCGGTGACGTTGACGCGTTACTCCCGGC
GTCTGCTTCAAACACTCCTCTGGGTCTCGACTTGGCGGGTCTCGACTATT
GAGCCTGCTGGAGGGGTCGAAAATCTTATGTACGGGGGGAGTATCTTGGG
AGGCAAGACATCAAGAAAAACTCCATGCATACAACACACTAGCACGCCCC
CCTCCCGTCGCGAGCGTGCCCTTACTTAATATATGTATCTATCTCCAAAG
TCTTGGTGAACTCTTCCTAAGAAAGTCTCTTAACAAGCAGTATATATATA
TACTTCGTATATATTTATTTATTTTTTTCTGCCCATTATTATAATAACCT
GTGACTATTTGTCGTGGCGTCCTCCTTCGTTTTTGGTTTTGGGGTTATTT
CGCGCCCTGGTGGGGGGGGTGTTGTCAGTTCATTATCGCGAGAACTCATC
ATCTGATTCTTCCCTTTCTGGCCCCTTTTTCCCGTCGTTTTTCGTTTTGC
ACGTTGTCGCGTCGTCCTCCTTCCTTCCCTTGCTTTCCTCTCGCGCGCTG
CTCTTTGTTTTTATTTTTATTTATTTTTTATTCGAGCGCAGTTTTTCTAC
TACCTCCTGTCGTTCATGATCCTCGTCTACTACACGTCGCAAGTGCTGGT
GCTGTTCATGGAGAACGCTCTCAGGGACGTGGCCCTGGTGAACCTGGCCT
TCAAGTCGTTGCACCTCCTCATCGGCTTCGTGATCATGATCCCCGTGCTG
CTGCTCAGCTTCTTCCCCATCTTCGTGGACCTGCAAACTCGCATGCTCTT
CAACGAAGACTTCTCTCAGAGGTATGTATGTGTGCACGCACCTCCCTTGT
GTACGTACACACAGCAGTGCCAGTGGTATGCACCGCGAACGCGCTGTGTA
TAAACACGTAAATAGTGCACAGCAGTACCAGCGGTGTGTACCGCAAGAGC
GCGCGTTTGGTGGGTTTCCCGTGCGCGTGGTATGTACTACGGAGAGTTAA
GGTGGCTGTGTTTGCGTTGTGCCACCGGCCAGCCAGAACACGCCCGGTAT
ATATATATATATTGACTGTCTAGTGACAGCCAACTCAGCGCTATGTAGTG
ACAGATTTTGTACATATGTATGTACGCCGGCCGGCACTCCATTCTGCTTC
GCACCACACCTCTTTCTTCTGCCAAACACACGCACGCACGCACACACAGG
TTCTCCATCGCCAAGATCTTCGCAAGACAGAACGACCGCACCAAAGTCAA
GAAGAACGCCTAAAATGCGCATTTAGGTGAAAACCTTCCGGCACCGAGTG
GGAGTGGGAGTGGGAGCGGATGGGGGTTCAGATTTGCTGTGTCGCTGCGC
ATGTTTTTCGTCGTTGTTTTCATCGCGCTGCTGGTTGGAGAGGTTTGATG
CCCGACTGGGCAGTTTGCACGACGGATTGGACTGTCGCCGCGGGAAGCGC
GCGCGAAGTTCGCGAAAGTATGTGTTATGTCTTTGGCATGGCCCTTGCGG
GCAATGCTTGGCGGACGGGGAAAGGGTGTTTTTTCTTCCGTGCTCGTTTG
TGTGTCGGCCTTGTTGGTGTCGAGGGGCGTGGTGTAGACATGAGGGGAAA
ATGGCGCTCTAATTAGTTCGTGTTGAGTCCTGCGGCATGGGAAGGAACAA
GCGTGTGCTTCGAAGGTATGTATGCTTGAGTCTGCATTTTCGCTGTGGCG
TGGCGAGGCGCGAACGGATCGTATGCGTGTATGTGTTGTGTCCTCGAAAC
ATCCGCGTTTCACGCACTCGATGTCTTGCGTGTTGTTTAGCTTCGGGGAA
GGGGGGCGAAATACGACACCTCCCTGTCACTTTGCCGACCACGGCTTTGC
CACGAAAAGAAACACCTCTCTGGAAGTTGAAAAAGGCGACACATGCATGC
TTTTGGGTGGGGGTGGAGGGTAGTTTATAGGAGCGTGTTGGATATTTGTC
TAGGCGTGTTTTCCCGCGGTTGACCCTTTGCCAAACGGCCGCAGTTAACG
GAGTTCGCCTCAGAAGTACATAGGTGTTCTTGAGGACCTTTACTCGGGGA
CCTAGTAGCCTTAGTGGGGCATTTTCAGACCGGCCTCTGAGTGGCACCCT
GGCACACTACTGTTTTTCTCTTTGTCTCATTTGGTTTTATCGCCGCATTC
TGCGGCTGTCAGAAACACTTTTGGGTTGTTCTGGCGTGAAATACGCGGGG
TAGTTTGGCGGTGTTTTGCATACTAAGGGGTGGGGGTTGGGTGCTTCCTC
TTCGGCTAACGTGGGTGGGCTATAAGTTGACACCGCGCAGTGGCATAGGC
GAACGATTGCGGCGCCAATCGGAAAGCATCGAATGTAGCCAGTCAATGCA
GGCTAAGATCTGTGCTGTCCAGTGGTACGAGATTGCCCGCCGGTAGTAGA
TATGCGGTTGTTGGGTAATTGCAACATGTACCGGGCACACGTGTGTGTTT
TCAGTAAGTTTATGTAGGTAAAATATGCTGAAAAAATGACGGACTGCTTG
ATGTGATTTTGCGTGTGTTTTTCCATGATGCAAACTTTCTCTCTAAACAA
AGAGGCGGAACTGCTGTCGCGTGGCCCCTCAAGTTGCGCAAGCATTGGCG
GGTTCGATGGCCTACAAAGGAGTGTTATCTACCCAGAGATGTATCTAGAC
TAGTGAGCGAGCATTCGGTTACGGTGGCGCTTACTTGGCCGAAAGGTACC
TACACATGAGGACAGATAAGGATTCTGTGGGAGGGACTTGGAAAAGGCCC
AAGGGCCGTTGAAGGAATGGGAAAGAAGAGAAAAGGGCGAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig150:51293..54385-

>mRNA_L-elsbetiae_contig150.3600.1 ID=mRNA_L-elsbetiae_contig150.3600.1|Name=mRNA_L-elsbetiae_contig150.3600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig150:51293..54385- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGGGCTCGCGTGTCGAAGGTGTTTATCCTGGCGGGCGTGATCGTGGG
CGTGATCCTGCTCGCGTCGTTCGACTTCCTGGAGAGCTCACGCCAGAGGT
GGGCTCGCGTGTCGAAGGTGTTTATCCTGGCGGGCGTGATCGTGGGCGTG
ATCCTGCTCGCGTCGTTCGACTTCCTGGAGAGCTCACGCCAGTTTTTCTA
CTACCTCCTGTCGTTCATGATCCTCGTCTACTACACGTCGCAAGTGCTGG
TGCTGTTCATGGAGAACGCTCTCAGGGACGTGGCCCTGGTGAACCTGGCC
TTCAAGTCGTTGCACCTCCTCATCGGCTTCGTGATCATGATCCCCGTGCT
GCTGCTCAGCTTCTTCCCCATCTTCGTGGACCTGCAAACTCGCATGCTCT
TCAACGAAGACTTCTCTCAGAGTTTTTCTACTACCTCCTGTCGTTCATGA
TCCTCGTCTACTACACGTCGCAAGTGCTGGTGCTGTTCATGGAGAACGCT
CTCAGGGACGTGGCCCTGGTGAACCTGGCCTTCAAGTCGTTGCACCTCCT
CATCGGCTTCGTGATCATGATCCCCGTGCTGCTGCTCAGCTTCTTCCCCA
TCTTCGTGGACCTGCAAACTCGCATGCTCTTCAACGAAGACTTCTCTCAG
AGGTTCTCCATCGCCAAGATCTTCGCAAGACAGAACGACCGCACCAAAGT
CAAGAAGAACGCCTAAGTTCTCCATCGCCAAGATCTTCGCAAGACAGAAC
GACCGCACCAAAGTCAAGAAGAACGCCTAA
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