prot_L-elsbetiae_contig150.3600.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig150.3600.1
Unique Nameprot_L-elsbetiae_contig150.3600.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length130
Homology
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BLAST of mRNA_L-elsbetiae_contig150.3600.1 vs. uniprot
Match: D7FPK0_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK0_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.470e-51
Identity = 98/128 (76.56%), Postives = 115/128 (89.84%), Query Frame = 0 
Query:    1 RWARVSKVFILAGVIVGVILLASFDFLESSRQFFYYLLSFMILVYYTSQVLVLFMENALRDVALVNLAFKSLHLLIGFVIMIPVLLLSFFPIFVDLQTRMLFNEDFSQRFSIAKIFARQNDRTKVKKN 128
            RWAR+SK+FIL GVIVGVI+L   D LES RQF +Y+LSF+IL+YY SQ++VLFME+ALR+VALVNLAFKS+HL+ G VI+ PVLLLSFFP+FVDLQTRMLFNEDFSQRFSIAKIFARQ++R  VKKN
Sbjct: 1803 RWARLSKLFILVGVIVGVIVLTDLDILESIRQFIFYILSFVILIYYVSQIVVLFMEDALRNVALVNLAFKSVHLITGIVIIAPVLLLSFFPLFVDLQTRMLFNEDFSQRFSIAKIFARQSNRRHVKKN 1930
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BLAST of mRNA_L-elsbetiae_contig150.3600.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 5.510e-9
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 0 
Query:   69 FKSLHLLIGFVIMIPVLLLSFFPIFVDLQTRMLFNEDFSQRFSIAKIFARQNDRTKVK 126
            ++++HL IG VIMIP LL++FFP     QTRM+FN++FS RF+ AK+FA + +R + +
Sbjct: 1866 YRAVHLTIGLVIMIPTLLVAFFPFMTHFQTRMMFNQNFSARFTSAKLFATERERQQAR 1923
[Close]
BLAST of mRNA_L-elsbetiae_contig150.3600.1 vs. uniprot
Match: A0A6H5KMI5_9PHAE (GT48 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.260e-9
Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 0 
Query:   69 FKSLHLLIGFVIMIPVLLLSFFPIFVDLQTRMLFNEDFSQRFSIAKIFARQNDRTKVK 126
            ++++HL IG VIMIP +L++FFP     QTRM+FN++FS RF+ AK+FA + +R + +
Sbjct:  424 YRAVHLTIGLVIMIPTMLVAFFPFMTPFQTRMMFNQNFSARFTSAKLFATERERQQAR 481
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig150.3600.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPK0_ECTSI1.470e-5176.561,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
D7FXN7_ECTSI5.510e-950.001,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KMI5_9PHAE9.260e-948.28GT48 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 55..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..94
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 95..129
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..54
NoneNo IPR availableTMHMMTMhelixcoord: 74..96
NoneNo IPR availableTMHMMTMhelixcoord: 32..54
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig150contigL-elsbetiae_contig150:52823..54385 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig150.3600.1mRNA_L-elsbetiae_contig150.3600.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig150 51293..54385 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig150.3600.1 ID=prot_L-elsbetiae_contig150.3600.1|Name=mRNA_L-elsbetiae_contig150.3600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
RWARVSKVFILAGVIVGVILLASFDFLESSRQFFYYLLSFMILVYYTSQV
LVLFMENALRDVALVNLAFKSLHLLIGFVIMIPVLLLSFFPIFVDLQTRM
LFNEDFSQRFSIAKIFARQNDRTKVKKNA*
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