mRNA_L-elsbetiae_contig150.3595.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig150.3595.1
Unique NamemRNA_L-elsbetiae_contig150.3595.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 8.090e-136
Identity = 315/408 (77.21%), Postives = 326/408 (79.90%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAEPEKGSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHGGEKNHKGRIDEYPE-----------GPRRGEREQAGPPMARGGGADAS-SWERGARAPGDGPS-GGTPFSSFSEPSSRAAAAAPPQPLSTGNVMDWRGLGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNSIGGMDRRR 1255
            MNVIQEIKRINERELEQGVSGKASWH+EYKDSAWVFAGGF YDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGI+LLGRTIRVDHKHKY+LPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFA+PE+GS S               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXX     XXX   X   AHG  K+ K R  E+P            G R   R    PP  R  GADAS +WERGARAPGDGPS GGTPFSS S+PS RA A APP PLS+GNVMDWRGLGGR      XXXXXXXXX      XXXXXXXXXXXXXX NS+GGMDRRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSDGAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHG--KDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 222 bits (565), Expect = 5.230e-66
Identity = 111/173 (64.16%), Postives = 134/173 (77.46%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSGKA-SWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARG-EAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAEPE 583
            MNVIQEIKRINE EL +GV+G A SWH +Y+DSA+VF GG  YDL EGD+LCV SQWGE+EDINL R++ TGKSKGF FIKYE+Q+ST+LAVDNFNG+ELLGR IRVDH  KY LP+ +REK E E+E     G E   E+  ++RPG AYEG +LA   N HKGVD++  P+
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPD 174
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 220 bits (560), Expect = 2.360e-65
Identity = 105/173 (60.69%), Postives = 136/173 (78.61%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQ-----WRPGVAYEGKQLATSHNFHKGVDVFA 574
            MNV++EI++INEREL++G++G ASWH++YKDSAWVF GG  Y+LTEGD++CV+SQWGEIEDINL R++DTGKSKGF F+KYE+Q+STILAVDN NG +LLGR +RVDH  KY LP E+++K   ED ++   GE   E G       W+PG AYEGK++  SH   +GVDV+A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDK---EDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.300e-64
Identity = 107/174 (61.49%), Postives = 139/174 (79.89%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSG-KASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAEPEKG 589
            MNV++EI+R+NE+EL++G +G + SWH +YKDSAWVF G     L+EGD+LCVMSQWGEIED++L R+K TGKSKGF F+KYE+Q+STILAVDN NGI+LL RT+RVDHK KY LP EV EKAE++++ R+  GE     GP+W+PG AYEGK+L   H+  KGVD+FA  ++G
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEG 174
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 210 bits (534), Expect = 2.910e-60
Identity = 107/167 (64.07%), Postives = 130/167 (77.84%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 571
            MNVI+EI+R+NE+ELEQGVS + SWH+ Y++SAWV+ G  SY+LTEGDILCV SQ GEIEDINL R+KDTGKS GFCFIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K   ED+E V   +A      + +PG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDK---EDDEGVLDDDAEL----RGQPGHAYEGKELANKYDIHQGVDVF 160
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 210 bits (534), Expect = 3.000e-60
Identity = 105/167 (62.87%), Postives = 127/167 (76.05%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 571
            MNVI+EI+R+NE+ELEQGV  + SWH+ Y+DSAWV+ GG SY+LTEGDILCV SQ GEIEDINL R+KD+GKS GFCFIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K +  DE      E       + RPG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSMGFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDKEDNVDEPVDENDEM------RGRPGHAYEGKELANKYDIHEGVDVF 161
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 207 bits (527), Expect = 3.000e-59
Identity = 107/167 (64.07%), Postives = 125/167 (74.85%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 571
            MNVI+EI+R+NE+ELEQGVS + SWH+ Y+DSAWV+ GG SYDLTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K     EE V        +G   +PG AYEGK+L    + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDK-----EENVVADHDDELRG---KPGHAYEGKELENKFDIHQGVDVF 159
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 207 bits (528), Expect = 4.100e-58
Identity = 108/169 (63.91%), Postives = 128/169 (75.74%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKE--DEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 571
            MNVI+EI+R+NE+ELEQGV  + SWH+ Y+DSAWV+ GG SY+LTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K E E  D+E + RG          +PG AYEGK+LA   + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDKEENEVADDEEL-RG----------KPGHAYEGKELANKFDIHQGVDVF 158
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 199 bits (507), Expect = 7.710e-58
Identity = 95/167 (56.89%), Postives = 126/167 (75.45%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKED--EERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVD 565
            MNV++EI+R+N++EL+QG+  + SWHY Y+DSAW++ G  SY+L+EGD+LCV SQ+GEIEDINL R+K+TGKS GF FIKYE+ +ST+LAVDNFNG  LL RT+RVDH HKY LP E+R+K + +D  EE   RG+          PG AY+GK L   ++ H+GVD
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKSMGFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVD 157
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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 201 bits (511), Expect = 6.610e-57
Identity = 101/173 (58.38%), Postives = 131/173 (75.72%), Query Frame = 2 
Query:   71 MNVIQEIKRINERELEQGVSGK-ASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAEPEK 586
            MNVIQEIKRIN+RELE G++G  ASWH +YK+SAWV+ G   Y LTEGDILC MSQWGEIEDIN  R+KDTGK KGF F+KYE+Q+ST+LAVDNFNGIEL+ RT+RVDH  KY LP EV++K ++ +E+    G+   +   ++ PG AY+  +LA+ ++  KG D+F   E+
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQ-HDSSSKFGPGHAYKDMELASKYDIAKGQDLFQTEEQ 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK4_ECTSI8.090e-13677.21RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2RL84_9STRA5.230e-6664.16Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835YJH4_9STRA2.360e-6560.69RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D1V2_9STRA2.300e-6461.49RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A6G0X0J2_9STRA2.910e-6064.07RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A485KUA3_9STRA3.000e-6062.87Aste57867_11943 protein n=1 Tax=Aphanomyces stella... [more]
W4H400_9STRA3.000e-5964.07RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A024UQN5_9STRA4.100e-5863.91Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9ZVW6_9STRA7.710e-5856.89U2 snRNP component IST3 n=1 Tax=Thraustotheca clav... [more]
A0A7S3YEY6_HETAK6.610e-5758.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig150contigL-elsbetiae_contig150:1409..4394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score414.8
Seed ortholog evalue4.4e-113
Seed eggNOG ortholog2880.D7FPK4
Preferred nameRBMX2
KEGG koko:K07919,ko:K13107,ko:K14807
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007623,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048511,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070274,GO:0070727,GO:0071011,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
EggNOG free text desc.mRNA-containing ribonucleoprotein complex export from nucleus
EggNOG OGsKOG0126@1,KOG0126@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03041,ko04031,ko04131
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-12_000920.1
Exons4
Model size1701
Cds size1188
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig150.3595.1prot_L-elsbetiae_contig150.3595.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig150 1479..3951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.157207-UTR-L-elsbetiae_contig150:1408..14781622815607.157207-UTR-L-elsbetiae_contig150:1408..1478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig150 1409..1478 +
1691682987.685859-UTR-L-elsbetiae_contig150:1408..14781691682987.685859-UTR-L-elsbetiae_contig150:1408..1478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig150 1409..1478 +
1622815607.2166574-UTR-L-elsbetiae_contig150:3951..43941622815607.2166574-UTR-L-elsbetiae_contig150:3951..4394Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig150 3952..4394 +
1691682987.7447705-UTR-L-elsbetiae_contig150:3951..43941691682987.7447705-UTR-L-elsbetiae_contig150:3951..4394Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig150 3952..4394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.1704035-CDS-L-elsbetiae_contig150:1478..17001622815607.1704035-CDS-L-elsbetiae_contig150:1478..1700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 1479..1700 +
1691682987.7012389-CDS-L-elsbetiae_contig150:1478..17001691682987.7012389-CDS-L-elsbetiae_contig150:1478..1700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 1479..1700 +
1622815607.1824841-CDS-L-elsbetiae_contig150:2062..21911622815607.1824841-CDS-L-elsbetiae_contig150:2062..2191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 2063..2191 +
1691682987.7135754-CDS-L-elsbetiae_contig150:2062..21911691682987.7135754-CDS-L-elsbetiae_contig150:2062..2191Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 2063..2191 +
1622815607.1923742-CDS-L-elsbetiae_contig150:2477..26421622815607.1923742-CDS-L-elsbetiae_contig150:2477..2642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 2478..2642 +
1691682987.724262-CDS-L-elsbetiae_contig150:2477..26421691682987.724262-CDS-L-elsbetiae_contig150:2477..2642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 2478..2642 +
1622815607.2020917-CDS-L-elsbetiae_contig150:3279..39511622815607.2020917-CDS-L-elsbetiae_contig150:3279..3951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 3280..3951 +
1691682987.734962-CDS-L-elsbetiae_contig150:3279..39511691682987.734962-CDS-L-elsbetiae_contig150:3279..3951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 3280..3951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig150.3595.1

>prot_L-elsbetiae_contig150.3595.1 ID=prot_L-elsbetiae_contig150.3595.1|Name=mRNA_L-elsbetiae_contig150.3595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=396bp
MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDIL
CVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELL
GRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYE
GKQLATSHNFHKGVDVFAEPEKGSASSEDDSDGGGGPPGESGAAKEERRE
AKRKRKEARAEARERKKRDKDPFTAGSGGGSGHQKKKKKHHKKDKKKNVK
KEDRGGGAHGGEKNHKGRIDEYPEGPRRGEREQAGPPMARGGGADASSWE
RGARAPGDGPSGGTPFSSFSEPSSRAAAAAPPQPLSTGNVMDWRGLGGRG
AGGRGRGRGGGRGGRDGGGRGGGGRQGRGRGGGGSNSIGGMDRRR*
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mRNA from alignment at L-elsbetiae_contig150:1409..4394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig150.3595.1 ID=mRNA_L-elsbetiae_contig150.3595.1|Name=mRNA_L-elsbetiae_contig150.3595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2986bp|location=Sequence derived from alignment at L-elsbetiae_contig150:1409..4394+ (Laminarionema elsbetiae ELsaHSoW15)
CTAGAGAGAGAGCCCCCTGTCAAATGGGCCAGGCTCTTCTGCTCTTGCTG
CTGCTGCACCCTGCGCAGCCATGAACGTGATCCAGGAGATCAAGCGCATC
AACGAGAGAGAACTGGAGCAAGGAGTGTCCGGAAAGGCTTCTTGGCACTA
TGAGTACAAGGATAGCGCCTGGGTGTTTGCTGGGGGCTTTTCGTATGACC
TGACCGAGGGCGACATCCTCTGTGTTATGTCACAGTGGGGAGAAATCGAG
GACATCAATCTATGCCGAGAGAAAGACACAGGAAAATCTAAGGTACTGAT
TGAGAGTGGTGGTTGGTATGTGATTAATGCCTGAAGAGAGAGAGGGTGAG
AATGTAACGAAATGATGATGTGTTGCAGTGTACGATCGGTGCAGACCTAG
ACTACAGCAGCAGTATCTATACAACTCCTGTAGATGTGTAGTCTATGTTT
CACAGGTTGCCAGCCTCCTCGCTTTACTACAGTTGGTAACGCCGCAACTA
TTCGGAGCATGCGGATTCTCAACAAAATCGACCACCTGTGTGCCACAGCA
GTTATCGATACGAACTACAAAATGGCACCGCTGCACTGCTGTAGCTCACG
ACCGCACGCCACATGTTTCCACACCCCAATTCCCCAACTCGAACCCTTTT
CTAGGGTTTCTGCTTCATCAAGTACGAGAACCAAAAGAGCACTATCTTGG
CGGTCGACAATTTCAATGGCATCGAACTGCTCGGCCGCACGATCCGAGTC
GACCACAAACACAAATACAACCTCCCCGCCGAGGTGAGAGGAAGAGGGAG
AGAGAGAGAGAGACGAACGGCATGCATGTTGCCACGCACCGCGGGGAATG
TTGAAGCTGCGCGCCACCGTGGCGCTACTCAAGCGCCACTGACGCGTGCC
GTGAGCCTGTAGCTTTTGTCGTCCACGTACACACCTGGAACTGAGACAAT
ATCTACAACAGCAGTCGGTGTTTTAAGGCGGTTGAACTCCTGACCACGGC
TCCCTCTCCGCCCCCATCGTCATGACTTGCGCAAAATGTTGGCCGGGCAA
AACGTTTGGGAAACGACAGGTGAGAGAGAAAGCGGAGAAAGAGGACGAGG
AGAGAGTCGCCCGTGGAGAGGCGCCTTCGGAGAAGGGGCCGCAGTGGAGG
CCCGGCGTCGCCTACGAAGGGAAGCAGCTGGCTACCTCTCACAACTTCCA
CAAGGGTGTAGACGTGTTCGCTGAGCCGGAAAAGGTGATCCTGAGAGAGC
TTGTGATTAGGCCTGATGTCCCTTCCGTTTTGTGGACAAGCATGTGTACA
TGGATGTACATATCCGCCTACACCCCAGGGTGTAAACGAGGGGGGCATTG
TGAAGATCTCAGAATACGGAGAATAAAGTGCGGGCTACTCATCCAACCCG
TGTTTTCCCTAGTCCTCGCATGAGAAATGGCAACGGCTCTAGGGTTTGTA
GTCCGTCAAGTAGGGGTAGGCCAGGCGATACTTATGTTTCGATTGAGGCA
TGTGTTTTGTTGAAGCGAGAAACGACGATGCATTGGTTAGGATAACGCGT
GTGGCTGTTGGAACGAACGGCCGGACTTGCTTAGTTAAGCGGGATGGAGG
AAGGGGATTCATTCGAGGCAGATGTCGAGTTATTTGAACAGGCGTTCGTT
CGGTGTAGAGTTGACTGCAAGAGAGTGAGAGAGGGGAGCGGCGATATTTA
TCCAGGGCGACACCATACACACACCCCTGAACTTTTACTTGTTCTCGCTC
CACTCAGTAGTACACCCCTCCTCTTTGATATTACACGCATAAGACCGCGA
CCCCCCCGTACGCTGTTTTTGGCATGATATTTTCTCTCGTTTATGTATCG
ACCTTTTTTCTGTGCTCACAGGGCTCTGCATCAAGCGAGGATGACAGCGA
CGGCGGTGGAGGACCACCCGGCGAATCGGGGGCGGCAAAGGAAGAGCGGC
GGGAGGCCAAGCGAAAGCGGAAGGAAGCGCGGGCGGAAGCGAGGGAGCGG
AAGAAGAGAGACAAGGATCCCTTCACCGCGGGCAGCGGCGGCGGCAGCGG
GCACCAAAAGAAGAAGAAAAAGCACCACAAGAAGGACAAGAAGAAAAACG
TGAAAAAGGAAGACCGCGGTGGCGGGGCTCACGGCGGGGAAAAGAACCAC
AAAGGAAGGATAGACGAGTATCCAGAAGGGCCCCGCAGAGGCGAGCGGGA
GCAGGCGGGACCACCGATGGCACGCGGTGGCGGCGCGGACGCCAGTTCGT
GGGAGCGCGGCGCGCGCGCACCCGGCGACGGCCCATCCGGCGGAACCCCG
TTTTCTTCTTTCTCGGAGCCTTCGAGCCGCGCCGCGGCGGCGGCACCACC
TCAACCCCTGTCAACCGGAAATGTGATGGACTGGAGGGGCCTGGGTGGGC
GTGGTGCCGGTGGACGAGGAAGAGGTAGAGGGGGCGGGCGAGGGGGCAGA
GATGGAGGCGGGCGTGGTGGAGGGGGCCGCCAGGGGAGGGGGCGCGGGGG
CGGAGGGTCGAACTCCATCGGTGGCATGGATCGGCGACGGTAGTGGCCGG
CGTAGAGTGGAGTCAGTTTTGAAACATGATCAAGCTTTTCTAGTTGTTGG
TGAAGGCATTGGTTTCTTGCTTTTTGGCTGTTCTTCGTGTGCTTTGTTGT
TCGCCATGCCTTTGTTTGCTGTAGCCGCGCGTTCTTTGGAACTTCGGGAA
AACTATGCAGCGGTTTGATAATTGCGTAGTTTCCGGCGAGTTGCCCCTTG
CAGGCGTGCTCCATCGCTTAGCGGAAAGCTACATCCACCGCTATGGTGTG
GGGACGTTGCCGCGATGTCCTCTGCGCCATTCATGGTTTTGGTACTGAGA
AGGTATTGTGCCGACCCAGAAAATTGAATGTAGTCAGTTATTTCCAGAAA
GTATCGTGAAAGCTTACGTCAGTCGCACGTATTTTATCCATTTCTCCGGT
CTGTGGTCCCAGCCCTACAATCCTTTTTCACGACGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig150:1409..4394+

>mRNA_L-elsbetiae_contig150.3595.1 ID=mRNA_L-elsbetiae_contig150.3595.1|Name=mRNA_L-elsbetiae_contig150.3595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2376bp|location=Sequence derived from alignment at L-elsbetiae_contig150:1409..4394+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTGATCCAGGAGATCAAGCGCATCAACGAGAGAGAACTGGAGCA
AGGAGTGTCCGGAAAGGCTTCTTGGCACTATGAGTACAAGGATAGCGCCT
GGGTGTTTGCTGGGGGCTTTTCGTATGACCTGACCGAGGGCGACATCCTC
TGTGTTATGTCACAGTGGGGAGAAATCGAGGACATCAATCTATGCCGAGA
GAAAGACACAGGAAAATCTAAGATGAACGTGATCCAGGAGATCAAGCGCA
TCAACGAGAGAGAACTGGAGCAAGGAGTGTCCGGAAAGGCTTCTTGGCAC
TATGAGTACAAGGATAGCGCCTGGGTGTTTGCTGGGGGCTTTTCGTATGA
CCTGACCGAGGGCGACATCCTCTGTGTTATGTCACAGTGGGGAGAAATCG
AGGACATCAATCTATGCCGAGAGAAAGACACAGGAAAATCTAAGGGTTTC
TGCTTCATCAAGTACGAGAACCAAAAGAGCACTATCTTGGCGGTCGACAA
TTTCAATGGCATCGAACTGCTCGGCCGCACGATCCGAGTCGACCACAAAC
ACAAATACAACCTCCCCGCCGAGGGTTTCTGCTTCATCAAGTACGAGAAC
CAAAAGAGCACTATCTTGGCGGTCGACAATTTCAATGGCATCGAACTGCT
CGGCCGCACGATCCGAGTCGACCACAAACACAAATACAACCTCCCCGCCG
AGGTGAGAGAGAAAGCGGAGAAAGAGGACGAGGAGAGAGTCGCCCGTGGA
GAGGCGCCTTCGGAGAAGGGGCCGCAGTGGAGGCCCGGCGTCGCCTACGA
AGGGAAGCAGCTGGCTACCTCTCACAACTTCCACAAGGGTGTAGACGTGT
TCGCTGAGCCGGAAAAGGTGAGAGAGAAAGCGGAGAAAGAGGACGAGGAG
AGAGTCGCCCGTGGAGAGGCGCCTTCGGAGAAGGGGCCGCAGTGGAGGCC
CGGCGTCGCCTACGAAGGGAAGCAGCTGGCTACCTCTCACAACTTCCACA
AGGGTGTAGACGTGTTCGCTGAGCCGGAAAAGGGCTCTGCATCAAGCGAG
GATGACAGCGACGGCGGTGGAGGACCACCCGGCGAATCGGGGGCGGCAAA
GGAAGAGCGGCGGGAGGCCAAGCGAAAGCGGAAGGAAGCGCGGGCGGAAG
CGAGGGAGCGGAAGAAGAGAGACAAGGATCCCTTCACCGCGGGCAGCGGC
GGCGGCAGCGGGCACCAAAAGAAGAAGAAAAAGCACCACAAGAAGGACAA
GAAGAAAAACGTGAAAAAGGAAGACCGCGGTGGCGGGGCTCACGGCGGGG
AAAAGAACCACAAAGGAAGGATAGACGAGTATCCAGAAGGGCCCCGCAGA
GGCGAGCGGGAGCAGGCGGGACCACCGATGGCACGCGGTGGCGGCGCGGA
CGCCAGTTCGTGGGAGCGCGGCGCGCGCGCACCCGGCGACGGCCCATCCG
GCGGAACCCCGTTTTCTTCTTTCTCGGAGCCTTCGAGCCGCGCCGCGGCG
GCGGCACCACCTCAACCCCTGTCAACCGGAAATGTGATGGACTGGAGGGG
CCTGGGTGGGCGTGGTGCCGGTGGACGAGGAAGAGGTAGAGGGGGCGGGC
GAGGGGGCAGAGATGGAGGCGGGCGTGGTGGAGGGGGCCGCCAGGGGAGG
GGGCGCGGGGGCGGAGGGTCGAACTCCATCGGTGGCATGGATCGGCGACG
GTAGGGCTCTGCATCAAGCGAGGATGACAGCGACGGCGGTGGAGGACCAC
CCGGCGAATCGGGGGCGGCAAAGGAAGAGCGGCGGGAGGCCAAGCGAAAG
CGGAAGGAAGCGCGGGCGGAAGCGAGGGAGCGGAAGAAGAGAGACAAGGA
TCCCTTCACCGCGGGCAGCGGCGGCGGCAGCGGGCACCAAAAGAAGAAGA
AAAAGCACCACAAGAAGGACAAGAAGAAAAACGTGAAAAAGGAAGACCGC
GGTGGCGGGGCTCACGGCGGGGAAAAGAACCACAAAGGAAGGATAGACGA
GTATCCAGAAGGGCCCCGCAGAGGCGAGCGGGAGCAGGCGGGACCACCGA
TGGCACGCGGTGGCGGCGCGGACGCCAGTTCGTGGGAGCGCGGCGCGCGC
GCACCCGGCGACGGCCCATCCGGCGGAACCCCGTTTTCTTCTTTCTCGGA
GCCTTCGAGCCGCGCCGCGGCGGCGGCACCACCTCAACCCCTGTCAACCG
GAAATGTGATGGACTGGAGGGGCCTGGGTGGGCGTGGTGCCGGTGGACGA
GGAAGAGGTAGAGGGGGCGGGCGAGGGGGCAGAGATGGAGGCGGGCGTGG
TGGAGGGGGCCGCCAGGGGAGGGGGCGCGGGGGCGGAGGGTCGAACTCCA
TCGGTGGCATGGATCGGCGACGGTAG
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