prot_L-elsbetiae_contig150.3595.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig150.3595.1
Unique Name	prot_L-elsbetiae_contig150.3595.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	396

Homology

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 407 bits (1047), Expect = 1.290e-137
Identity = 315/408 (77.21%), Postives = 326/408 (79.90%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAEPEKGSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHGGEKNHKGRIDEYPE-----------GPRRGEREQAGPPMARGGGADAS-SWERGARAPGDGPS-GGTPFSSFSEPSSRAAAAAPPQPLSTGNVMDWRGLGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNSIGGMDRRR 395
            MNVIQEIKRINERELEQGVSGKASWH+EYKDSAWVFAGGF YDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGI+LLGRTIRVDHKHKY+LPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFA+PE+GS S               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXX     XXX   X   AHG  K+ K R  E+P            G R   R    PP  R  GADAS +WERGARAPGDGPS GGTPFSS S+PS RA A APP PLS+GNVMDWRGLGGR      XXXXXXXXX      XXXXXXXXXXXXXX NS+GGMDRRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSDGAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHG--KDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 220 bits (560), Expect = 3.520e-67
Identity = 111/173 (64.16%), Postives = 134/173 (77.46%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKA-SWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARG-EAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAEPE 171
            MNVIQEIKRINE EL +GV+G A SWH +Y+DSA+VF GG  YDL EGD+LCV SQWGE+EDINL R++ TGKSKGF FIKYE+Q+ST+LAVDNFNG+ELLGR IRVDH  KY LP+ +REK E E+E     G E   E+  ++RPG AYEG +LA   N HKGVD++  P+
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPD 174

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 218 bits (555), Expect = 1.630e-66
Identity = 105/173 (60.69%), Postives = 136/173 (78.61%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQ-----WRPGVAYEGKQLATSHNFHKGVDVFA 168
            MNV++EI++INEREL++G++G ASWH++YKDSAWVF GG  Y+LTEGD++CV+SQWGEIEDINL R++DTGKSKGF F+KYE+Q+STILAVDN NG +LLGR +RVDH  KY LP E+++K   ED ++   GE   E G       W+PG AYEGK++  SH   +GVDV+A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDK---EDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.450e-65
Identity = 107/174 (61.49%), Postives = 139/174 (79.89%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSG-KASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAEPEKG 173
            MNV++EI+R+NE+EL++G +G + SWH +YKDSAWVF G     L+EGD+LCVMSQWGEIED++L R+K TGKSKGF F+KYE+Q+STILAVDN NGI+LL RT+RVDHK KY LP EV EKAE++++ R+  GE     GP+W+PG AYEGK+L   H+  KGVD+FA  ++G
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEG 174

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.310e-61
Identity = 107/167 (64.07%), Postives = 130/167 (77.84%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGVS + SWH+ Y++SAWV+ G  SY+LTEGDILCV SQ GEIEDINL R+KDTGKS GFCFIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K   ED+E V   +A      + +PG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDK---EDDEGVLDDDAEL----RGQPGHAYEGKELANKYDIHQGVDVF 160

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.380e-61
Identity = 105/167 (62.87%), Postives = 127/167 (76.05%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGV  + SWH+ Y+DSAWV+ GG SY+LTEGDILCV SQ GEIEDINL R+KD+GKS GFCFIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K +  DE      E       + RPG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSMGFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDKEDNVDEPVDENDEM------RGRPGHAYEGKELANKYDIHEGVDVF 161

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.480e-60
Identity = 107/167 (64.07%), Postives = 125/167 (74.85%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGVS + SWH+ Y+DSAWV+ GG SYDLTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K     EE V        +G   +PG AYEGK+L    + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDK-----EENVVADHDDELRG---KPGHAYEGKELENKFDIHQGVDVF 159

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 206 bits (523), Expect = 3.330e-59
Identity = 108/169 (63.91%), Postives = 128/169 (75.74%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKE--DEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 167
            MNVI+EI+R+NE+ELEQGV  + SWH+ Y+DSAWV+ GG SY+LTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K E E  D+E + RG          +PG AYEGK+LA   + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDKEENEVADDEEL-RG----------KPGHAYEGKELANKFDIHQGVDVF 158

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 197 bits (502), Expect = 7.320e-59
Identity = 95/167 (56.89%), Postives = 126/167 (75.45%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKED--EERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVD 165
            MNV++EI+R+N++EL+QG+  + SWHY Y+DSAW++ G  SY+L+EGD+LCV SQ+GEIEDINL R+K+TGKS GF FIKYE+ +ST+LAVDNFNG  LL RT+RVDH HKY LP E+R+K + +D  EE   RG+          PG AY+GK L   ++ H+GVD
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKSMGFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVD 157

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BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 199 bits (506), Expect = 6.050e-58
Identity = 101/173 (58.38%), Postives = 131/173 (75.72%), Query Frame = 0

Query:    1 MNVIQEIKRINERELEQGVSGK-ASWHYEYKDSAWVFAGGFSYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELLGRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAEPEK 172
            MNVIQEIKRIN+RELE G++G  ASWH +YK+SAWV+ G   Y LTEGDILC MSQWGEIEDIN  R+KDTGK KGF F+KYE+Q+ST+LAVDNFNGIEL+ RT+RVDH  KY LP EV++K ++ +E+    G+   +   ++ PG AY+  +LA+ ++  KG D+F   E+
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQ-HDSSSKFGPGHAYKDMELASKYDIAKGQDLFQTEEQ 172

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig150.3595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPK4_ECTSI	1.290e-137	77.21	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7S2RL84_9STRA	3.520e-67	64.16	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A835YJH4_9STRA	1.630e-66	60.69	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A4D9D1V2_9STRA	1.450e-65	61.49	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A6G0X0J2_9STRA	2.310e-61	64.07	RRM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
A0A485KUA3_9STRA	2.380e-61	62.87	Aste57867_11943 protein n=1 Tax=Aphanomyces stella...	[more]
W4H400_9STRA	2.480e-60	64.07	RRM domain-containing protein n=3 Tax=Aphanomyces ...	[more]
A0A024UQN5_9STRA	3.330e-59	63.91	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A1V9ZVW6_9STRA	7.320e-59	56.89	U2 snRNP component IST3 n=1 Tax=Thraustotheca clav...	[more]
A0A7S3YEY6_HETAK	6.050e-58	58.38	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 191..218
None	No IPR available	PANTHER	PTHR45880	FAMILY NOT NAMED	coord: 1..259
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..259
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 34..107 e-value: 2.9E-19 score: 80.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 35..105 e-value: 2.1E-15 score: 56.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 33..111 score: 15.136
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 24..135 e-value: 1.0E-22 score: 82.5
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig150	contig	L-elsbetiae_contig150:1479..3951 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig150.3595.1	mRNA_L-elsbetiae_contig150.3595.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig150 1409..4394 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig150.3595.1 ID=prot_L-elsbetiae_contig150.3595.1|Name=mRNA_L-elsbetiae_contig150.3595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=396bp
MNVIQEIKRINERELEQGVSGKASWHYEYKDSAWVFAGGFSYDLTEGDIL
CVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIELL
GRTIRVDHKHKYNLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYE
GKQLATSHNFHKGVDVFAEPEKGSASSEDDSDGGGGPPGESGAAKEERRE
AKRKRKEARAEARERKKRDKDPFTAGSGGGSGHQKKKKKHHKKDKKKNVK
KEDRGGGAHGGEKNHKGRIDEYPEGPRRGEREQAGPPMARGGGADASSWE
RGARAPGDGPSGGTPFSSFSEPSSRAAAAAPPQPLSTGNVMDWRGLGGRG
AGGRGRGRGGGRGGRDGGGRGGGGRQGRGRGGGGSNSIGGMDRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf