mRNA_L-elsbetiae_contig14999.3583.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14999.3583.1
Unique NamemRNA_L-elsbetiae_contig14999.3583.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14999.3583.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 3.910e-72
Identity = 132/171 (77.19%), Postives = 133/171 (77.78%), Query Frame = 2 
Query:    8 MSRHCVSVLLLVCIAQACLAFVPSWTATFRSSRLQPPPSTPATATCSLSQPSGATCPVFGACGTCGAQFFYPVRGMTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKIEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 520
            MSR+CVSVLLLV IAQACLAFVPSWTATFRSSR QPP STPA AT SLSQPSG  CPVFGAC TCGAQFFYPV GMTSLSAMSEG EEEGGGDH AREAAD  PAADEIRAVQ                        D IEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR
Sbjct:    1 MSRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 171
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BLAST of mRNA_L-elsbetiae_contig14999.3583.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.210e-63
Identity = 128/141 (90.78%), Postives = 128/141 (90.78%), Query Frame = 2 
Query:  233 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKIEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGXXXXXXXXKEQLRELLLNELLLKKEDRLSRIEQLHANNAPA 655
            MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERK EDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ      XXXXXXXX    RELLLNELLLKKEDR SRIEQL ANNAPA
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXX---XRELLLNELLLKKEDRFSRIEQLRANNAPA 138
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BLAST of mRNA_L-elsbetiae_contig14999.3583.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.070e-56
Identity = 120/153 (78.43%), Postives = 124/153 (81.05%), Query Frame = 2 
Query:  215 FYPVRGMTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKIEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGXXXXXXXXKEQLRELLLN------ELLLKKEDRLSRIEQLHANNAPA 655
            FYPVRGMT LSAMSEGDEEEGGGDH AREAADR+PAADEIRAVQD+IRGVERKIEDAE+ETAEVVKKIDDIEAAIAGG+RYLGMTDPEALLKQL    EQLRR   XXXXXXXX                ELLLK EDRLSR EQ  ANNAPA
Sbjct:    2 FYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL----EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
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BLAST of mRNA_L-elsbetiae_contig14999.3583.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 5.250e-47
Identity = 109/149 (73.15%), Postives = 112/149 (75.17%), Query Frame = 2 
Query:  233 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKIED-------AEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGXXXXXXXXKEQLRELLLNELLLKKEDRLSRIEQLHANNAPAG 658
            MTS SAMSEGDEEEGGGDHDAREAAD  PAADEIRAVQ                   AE+ETAEVVKKID IEAAIAGGS+YLGMTDPEALLKQLGRKEEQLRRKEG  XXXXXX           +LLKKEDRLSRIEQL ANNAPAG
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXX-----XXXXXILLKKEDRLSRIEQLRANNAPAG 144
[Close]
BLAST of mRNA_L-elsbetiae_contig14999.3583.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.580e-25
Identity = 79/148 (53.38%), Postives = 86/148 (58.11%), Query Frame = 2 
Query:  218 YPVRGMTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKIEDAEKETAEVVKKIDDIEAA-IAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGXXXXXXXXKEQLRELLLNELLLKKEDRLSRIEQLHANNAPAG 658
            YPVRG+TSLSA+SEG+EE+GGGDHD REAA   PAADEIRAVQ                      KIDD+EAA IAGGS YLGMTDPEALLK+  R              XXXX            +L KE RL  IEQ  ANNAPAG
Sbjct:    3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKEKER------------LGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAG 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14999.3583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM56_ECTSI3.910e-7277.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI1.210e-6390.78Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI2.070e-5678.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI5.250e-4773.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI1.580e-2553.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14999contigL-elsbetiae_contig14999:2963..4056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size718
Cds size711
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14999.3583.1prot_L-elsbetiae_contig14999.3583.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14999 2970..4056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.0227647-UTR-L-elsbetiae_contig14999:2962..29691622815606.0227647-UTR-L-elsbetiae_contig14999:2962..2969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14999 2963..2969 +
1691682986.940004-UTR-L-elsbetiae_contig14999:2962..29691691682986.940004-UTR-L-elsbetiae_contig14999:2962..2969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14999 2963..2969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.0349472-CDS-L-elsbetiae_contig14999:2969..36181622815606.0349472-CDS-L-elsbetiae_contig14999:2969..3618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 2970..3618 +
1691682986.9547622-CDS-L-elsbetiae_contig14999:2969..36181691682986.9547622-CDS-L-elsbetiae_contig14999:2969..3618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 2970..3618 +
1622815606.0498304-CDS-L-elsbetiae_contig14999:3994..40561622815606.0498304-CDS-L-elsbetiae_contig14999:3994..4056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 3995..4056 +
1691682986.9678466-CDS-L-elsbetiae_contig14999:3994..40561691682986.9678466-CDS-L-elsbetiae_contig14999:3994..4056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 3995..4056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14999.3583.1

>prot_L-elsbetiae_contig14999.3583.1 ID=prot_L-elsbetiae_contig14999.3583.1|Name=mRNA_L-elsbetiae_contig14999.3583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
MSRHCVSVLLLVCIAQACLAFVPSWTATFRSSRLQPPPSTPATATCSLSQ
PSGATCPVFGACGTCGAQFFYPVRGMTSLSAMSEGDEEEGGGDHDAREAA
DRIPAADEIRAVQDDIRGVERKIEDAEKETAEVVKKIDDIEAAIAGGSRY
LGMTDPEALLKQLGRKEEQLRRKEGKEEQLRREKEQLRELLLNELLLKKE
DRLSRIEQLHANNAPAGAHRRGGGVDPLLRCLPVIF*
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mRNA from alignment at L-elsbetiae_contig14999:2963..4056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14999.3583.1 ID=mRNA_L-elsbetiae_contig14999.3583.1|Name=mRNA_L-elsbetiae_contig14999.3583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1094bp|location=Sequence derived from alignment at L-elsbetiae_contig14999:2963..4056+ (Laminarionema elsbetiae ELsaHSoW15)
TTTCAAGATGTCAAGGCATTGTGTGTCGGTTCTTCTCCTGGTTTGTATCG
CACAAGCATGCTTGGCCTTCGTCCCGAGCTGGACGGCGACGTTCAGGTCG
TCACGCTTGCAGCCCCCTCCTTCCACGCCTGCAACGGCGACGTGTTCGCT
CTCGCAGCCCTCTGGTGCGACCTGCCCTGTGTTCGGGGCTTGTGGCACTT
GCGGGGCGCAATTTTTTTACCCGGTGCGAGGGATGACGAGCTTGAGTGCG
ATGAGCGAGGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGA
AGCTGCCGATCGCATTCCGGCGGCGGACGAAATCCGTGCGGTCCAGGATG
ACATCCGTGGTGTAGAGCGCAAGATCGAGGATGCAGAGAAGGAGACGGCA
GAGGTTGTCAAGAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTC
CAGGTACCTCGGAATGACCGACCCCGAAGCCCTCTTGAAGCAACTAGGCA
GGAAGGAGGAGCAGCTACGCAGGAAGGAGGGGAAGGAGGAGCAACTCCGC
AGGGAGAAGGAGCAACTCCGCGAGCTCCTGTTGAACGAGCTCCTTTTGAA
GAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCATGCCAACAACGCCC
CCGCAGGTTAGAAGCGTCCTATTATATGTGGAGATCCACAACAGTGTACA
GATTAGGGGATGCAGGTCGCCCGCTATAAAAGCAGACCATTGAAACAATT
CGAGGAGTTCCTTGTGGCTGGTACGTTGCAGTCCTGTCGTTTTGCACCGT
CAATTCGCCTCCTTTTTTAAAGCAACCTGCTGACGTTATGGTAGATCTAC
GCTCCTCAGCAACTACAGTACGTGCGACGTTTTCTTGTCCCACCTGGCTG
CAGAACGCTGTGACAAGTCCTCCTCTGCTACACAAGGATTGCTCCTACAT
TATTTTCCTCCCATTATTGGATTTTGTTGTCTGCCCCACTGGCCCCCATC
CTCTACCTCGATTAGCTAGACGACCCAACCAGGGGCACACAGGAGGGGGG
GGGGTGTGGACCCCCTCCTGCGGTGCCTGCCTGTTATTTTTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14999:2963..4056+

>mRNA_L-elsbetiae_contig14999.3583.1 ID=mRNA_L-elsbetiae_contig14999.3583.1|Name=mRNA_L-elsbetiae_contig14999.3583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig14999:2963..4056+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAAGGCATTGTGTGTCGGTTCTTCTCCTGGTTTGTATCGCACAAGC
ATGCTTGGCCTTCGTCCCGAGCTGGACGGCGACGTTCAGGTCGTCACGCT
TGCAGCCCCCTCCTTCCACGCCTGCAACGGCGACGTGTTCGCTCTCGCAG
CCCTCTGGTGCGACCTGCCCTGTGTTCGGGGCTTGTGGCACTTGCGGGGC
GCAATTTTTTTACCCGGTGCGAGGGATGACGAGCTTGAGTGCGATGAGCG
AGGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCC
GATCGCATTCCGGCGGCGGACGAAATCCGTGCGGTCCAGGATGACATCCG
TGGTGTAGAGCGCAAGATCGAGGATGCAGAGAAGGAGACGGCAGAGGTTG
TCAAGAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAGGTAC
CTCGGAATGACCGACCCCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGA
GGAGCAGCTACGCAGGAAGGAGGGGAAGGAGGAGCAACTCCGCAGGGAGA
AGGAGCAACTCCGCGAGCTCCTGTTGAACGAGCTCCTTTTGAAGAAGGAG
GACCGGCTCTCCAGGATTGAGCAGCTCCATGCCAACAACGCCCCCGCAGA
TGTCAAGGCATTGTGTGTCGGTTCTTCTCCTGGTTTGTATCGCACAAGCA
TGCTTGGCCTTCGTCCCGAGCTGGACGGCGACGTTCAGGTCGTCACGCTT
GCAGCCCCCTCCTTCCACGCCTGCAACGGCGACGTGTTCGCTCTCGCAGC
CCTCTGGTGCGACCTGCCCTGTGTTCGGGGCTTGTGGCACTTGCGGGGCG
CAATTTTTTTACCCGGTGCGAGGGATGACGAGCTTGAGTGCGATGAGCGA
GGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCG
ATCGCATTCCGGCGGCGGACGAAATCCGTGCGGTCCAGGATGACATCCGT
GGTGTAGAGCGCAAGATCGAGGATGCAGAGAAGGAGACGGCAGAGGTTGT
CAAGAAGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCAGGTACC
TCGGAATGACCGACCCCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGAG
GAGCAGCTACGCAGGAAGGAGGGGAAGGAGGAGCAACTCCGCAGGGAGAA
GGAGCAACTCCGCGAGCTCCTGTTGAACGAGCTCCTTTTGAAGAAGGAGG
ACCGGCTCTCCAGGATTGAGCAGCTCCATGCCAACAACGCCCCCGCAGGG
GCACACAGGAGGGGGGGGGGTGTGGACCCCCTCCTGCGGTGCCTGCCTGT
TATTTTTTGAGGGCACACAGGAGGGGGGGGGGTGTGGACCCCCTCCTGCG
GTGCCTGCCTGTTATTTTTTGA
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