mRNA_L-elsbetiae_contig1443.3272.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1443.3272.1
Unique NamemRNA_L-elsbetiae_contig1443.3272.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.140e-41
Identity = 116/258 (44.96%), Postives = 149/258 (57.75%), Query Frame = 1
Query:  598 MILPTGKQ-FVALDAAADQGHRETVRELLALGVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLLRLDWGVPARRYVNVRN-DLGFTPLWIAVGSGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTPLGFVMDSIRQRNYRGGFATEEQVERMQAVRRLLLRVDAVRALSWLWRRSDNASGTARSAEEEVMDGDYPGRSAAAAAAALKVPIVRD-RKRAATAAFFRYSNKP 1362
            ++ PTG    VALD AA  GH ETVRELL LG+  CGGP RG   L LAA  + + ++  L + GVVDTG AL +   +G EA VKFLL+  W  P   YVN R+ +  FTPL+IA+   +PR+VRMLLDAGADV  TC         G   +PL     +IR +  +   ATEEQ+  +QA+RRLLLRV+A+ A SWLW    N    A +A E  ++G   G+S     A + +   R   +R    A  RYSNKP
Sbjct:  231 VVRPTGTTGVVALDVAAQNGHEETVRELLRLGIGLCGGPTRGNDALRLAAWVQHMSIMTALTDAGVVDTGTALFNVAAKGLEAPVKFLLQQKWNTPGGAYVNTRSRNAKFTPLFIAIEGASPRVVRMLLDAGADVTSTCSLPG-----GISRSPLSQCESNIRSKFCQALPATEEQLNGLQAIRRLLLRVEAIYASSWLW--CSNIPCIAPAARE--VEGAC-GKSRIPRKARMLISWRRTGARRVLMPASLRYSNKP 478          
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.920e-39
Identity = 103/217 (47.47%), Postives = 123/217 (56.68%), Query Frame = 1
Query:  607 PTGKQFVALDAAADQGHRETVRELL-ALGVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLLRLDWGVPARRYVNVRNDLGFTPLWIAV---GSGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTPLGFVMDSIRQRNYRGGFATEEQVERMQAVRRLLLRVDAVRALSWLWRRSDNASGTARSAEEEVM 1245
            P+G  FV LD A   GH E VREL   LGV  CGG   GV  L LA  ++DV ++ IL  GGVVDTG+AL  A    RE SVKFLL+   G  A    N  +  G TPL   +   GS +PRI R L+DA AD K T   T   Q+  SR TPLGF   S+RQ       ATEEQ+  ++A+ RLL +VDAV A+SWLWR SD  +  A  A    M
Sbjct:  166 PSGATFVPLDVAVQHGHSEVVRELTHQLGVRGCGGVSGGVESLRLATTEQDVDIMGILTVGGVVDTGRALVVAAENSREESVKFLLQHQAGGGAWYVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDAEADTKSTVLVTKSGQWTTSRDTPLGFATHSLRQNKVGRKNATEEQLRSLKAIHRLLSQVDAVHAVSWLWRSSDTRNSYAVGAASSRM 382          
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: D8LPY4_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPY4_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.080e-38
Identity = 104/263 (39.54%), Postives = 140/263 (53.23%), Query Frame = 1
Query:  589 AYPMILPTGKQFVALDAAADQGHRETVRELLAL-GVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLLRLDWGVPARRYVNVRNDLGFTPLWIAVGSGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTPLGFVMDSIRQRNYRGGFATEEQVERMQAVRRLLLRVDAVRALSWLWRRSDNASGTARSAEEEVMDGDYPGRSAAAAAAALKVPIVRDRKRA-----ATAAFFRYSNK 1359
            A P   P G   VALD AA +GH E VREL+   G+  C G   G + L LA + + V  + +L   GVVDTG +L  A   GRE +VK LL+  W  P  RY++ RN+   TPL++AV +  PRIVR+LLDAGA+ K T   +  +  +    T LG   +++R   + G  AT E+  R++  RRLL+RV+AVRA+SWLW  +  A          +  G    + A   A+ L V I R   RA       A  FRYS K
Sbjct:  162 AIPRFQPDGSTRVALDVAAQKGHSEVVRELIQYRGIKTCAGVTGGAIALNLATKHQHVDTMRLLLAAGVVDTGMSLFTAATLGRERAVKLLLQQKWATPGDRYIDSRNECHCTPLFVAVSAAAPRIVRLLLDAGANEKLTRPVSYSFHGKMKNETLLGLADNNLRYEVHDGRRATSEETNRLEESRRLLMRVEAVRAVSWLWGTTSPAYA--------IPLGTDGNKDAKGGASRLGVRIARRETRAHRNGALLATLFRYSVK 416          
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: D7FNJ3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ3_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 8.540e-36
Identity = 89/189 (47.09%), Postives = 118/189 (62.43%), Query Frame = 1
Query:  631 LDAAADQGHRETVRELLALGVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLLRLDWGVPARRYVNVRNDLGFTPLWIAVGSGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRV--TPLGFVMDSIRQRNYRGGFATEEQVERMQAVRRLLLRVDAVRALSWLW 1191
            LDAA+++GH   VRELL LG+ ACGGP RG   L +AAQ   VG++ +LR+ GVVD GKA+  A   GREASV+FLL+ +       Y N R++ G T  + A     PRI R LLDAGAD   T       +++  R   T L  V+ S+  + YR   AT++Q+ R+QA RRLLL++DAVRA+SW W
Sbjct:  216 LDAASERGHESVVRELLNLGLKACGGPSRGRDALFMAAQDNRVGVLTMLRDAGVVDRGKAIVAAAGFGREASVRFLLKQERATTRIDYANTRDEAGRTLFYRAAWGAYPRIGRWLLDAGADETLTSVVQPFLRYDNMRFEDTALKLVLRSLSSKQYRFEPATDDQMLRLQAFRRLLLQIDAVRAISWPW 404          
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: D8LPY3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY3_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 5.490e-35
Identity = 103/262 (39.31%), Postives = 140/262 (53.44%), Query Frame = 1
Query:  589 AYPMILPTGKQFVALDAAADQGHRETVRELLA-LGVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLLRLDWGVPARRYVNVRNDLGFTPLWIAVGSGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTPLGFVMDSIRQRNYRGGFATEEQVERMQAVRRLLLRVDAVRALSWLWRRSDNASGTARSAEEEVMDGDYPGRSAAAAAAALKVPIVRDRKRA----ATAAFFRYSNK 1359
            A+P     G   VALD AA +G  E VREL+   G+ AC G   GV  L LAA+ + V  + +L   GVVDTG +L  A + GR+ +VK LL+  W  P   YV+ RND   TPL++AV +  P++VR+LLDAGA+ + T   +  ++      T L     ++    ++G  ATEE++ R++ VRRLLLRV+ VRA+SWLW       GT        + G    R A   A+ L V I R   RA      A   RYS K
Sbjct:  129 AFPRRQSDGSTRVALDVAAQKGFTEVVRELIQHRGIKACVGQDAGVTALDLAAKHQRVDAMRLLLAAGVVDTGDSLFTAADCGRDKAVKLLLQQKWATPGAGYVDSRNDYQCTPLFVAVAAAAPKVVRLLLDAGANERLTRPVSYSFRGPLENETLLELANRNLGCEMHKGQCATEEEMNRLEEVRRLLLRVETVRAISWLW-------GTTSPVYAAPL-GTGTNRGARGGASGLGVYIARRETRAHCGSLLATMLRYSGK 382          
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.210e-34
Identity = 94/202 (46.53%), Postives = 116/202 (57.43%), Query Frame = 1
Query:  652 GHRETVRELLA-LGVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLLRLDWGVPARRYVNVRNDLGFTPLWIAV---GSGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTPLGFVMDSIRQRNYRGGFATEEQVERMQAVRRLLLRVDAVRALSWLWRRSDNASGTARSAEEEVM 1245
            GH E VREL+  LGV  CGG   GV  L LAA ++ V ++ IL  GGVVDTG+AL  A    RE SVKFLL+   G       N  +  G TPL   +   GS +PRI R L+D GAD K T   T   ++  SR TPLGF   S+RQ    G  ATEEQ+  ++A+ RLL +++AV A+SWLWR SD   G A  A    M
Sbjct:  191 GHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQAGGGTWYVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRM 392          
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 6.820e-34
Identity = 103/263 (39.16%), Postives = 146/263 (55.51%), Query Frame = 1
Query:  607 PTGKQFVALDAAADQGHRETVRELLA-LGVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLL---RLDWGVPARRYVNVRNDLGFTPLWIAVGSGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTPLGFVMDSIRQRN--YRGGFATEEQVERMQAVRRLLLRVDAVRALSWLWRRSDNASGTARSAEEEVMDGDYPGRSAAAAAAALKVPIVRDRKRAA-----TAAFFRYSNKP 1362
            P+G+ F+ LDAAA+ GH E V EL+  +G+D CGG   GV  L  AAQ +++ ++ IL   GVVDTG AL  A   G E  +KFLL   R    +    YVN R+  G TPL   +    PR+VR+L++AGAD        N    +   +TPLG  M+ +R +      G A+ EQ+ +++A+RRLLLRV+AV A+SWLW  SD ++ T  +A               A + A+ +P++  R+RA       AA  RYS+KP
Sbjct:  182 PSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLW-PSDISTITRAAARGTDRT--------TAISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435          
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.350e-30
Identity = 151/464 (32.54%), Postives = 196/464 (42.24%), Query Frame = 1
Query:   19 LHTAALEDNAELAEALLLSAAARVDTRSDDGGTPLMVAAQGGHERVARALLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLECACFQDAKRPLHKAXXXXXXXXXXXXXXXXXXXXXRTVVGETPLLXXXXXXXXXXXXXXXXXXXXXAYPMIL----PTGKQFVALDAAADQGHRETVRELLA-LGVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLLRL-----DWGVPARRYVNVRNDLGFTPLWIAVG---SGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTPLGFVMDSIRQRNYRGGF-ATEEQVERMQAVRRLLLRVDAVRALSWLWRRSDNASGTARSAEEEVMDGDYPGRSAAAAAAALKVPIVRDRKR---AATAAFFRYSNK 1359
            LH A L  +AEL +A+L      +D R+  G TPLM+A   GH R+A+ L+                                                                       L+     +   PLH+A    XXXXXXXXXXXXX    +   G T L                      A P+++    P     V LD AA  GH + VREL+  LG++ C     G   L  AA  + + ++AIL E GVVDTGKAL  A   G EASVKFLLR        GV    Y+N R+  G+TPL +      S  PRIVRML+DAGAD     +  NL        TPL F    +R++    G  AT+E ++R++A+ RLLLRVDAV A+SWLW       G A   + E      P       A  L +PI++ R +      A   RYS K
Sbjct:  109 LHRAVLVGSAELTQAVLAGGTVEIDQRNSYGATPLMMAVHNGHSRIAKMLIKKGANVSIADKRGFTALHFCCAREEDDAIVKLLAKAGAD--------------------------------LDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTAL---HIAAEEGQVAVMRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGA-YLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPP---LP-------ALKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.590e-28
Identity = 106/296 (35.81%), Postives = 149/296 (50.34%), Query Frame = 1
Query:  613 GKQFVALDAAADQGHRETVRELLA-LGVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLLR------LDWGVPARRYVNVRNDLGFTPLWIAVG----SGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTPLGFVMDSIRQRNYRGGFATEEQVERMQAVRRLLLRVDAVRALSWLWRRSDNASGTARSAEEEVMDGDYPGRSAAAAAAALKVPIVRDRK----RAATAAFFRYSNKP*PGSQPVSAQDKGGR-VSCPF--FQKLKAGP 1446
            G+  + LDAA    H   VR+L+  LG+  CGG   G      A Q +   ++ +L + G +DTG+ L DA   G EA VK LL+      +DW      YVN +   G TP+   +G    SG+PR++R+ LDAGAD   T R TN    +  R TPL +    +R +  RG  +T+ +   ++AVRR+LL+++A+RA+SW W +SD  S    S E  V DG    +S       L + + R RK    R    A  RYS KP   S+    Q +G R +S P   F   KA P
Sbjct:  344 GRIILPLDAAVISKHAAVVRKLIQQLGIQGCGGASAGADASRWAVQTQQYDIVVMLADTGEIDTGRVLIDAAKFGSEALVKILLQQQRGKHMDWDT----YVNKKQPDGRTPVVCRIGRALRSGSPRVLRLFLDAGADTASTVRITNKEGVQLFRGTPLAYTTWLLRDQQARGIDSTKGEPCSLEAVRRMLLQLEAIRAVSWCW-QSDALS----SIERAVQDGRPRAKSRLTVDTPLGLTLPRRRKARARRVLVMAMSRYSRKP-MSSREYKKQPRGVRSISSPVQEFPADKAPP 629          
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.300e-25
Identity = 103/283 (36.40%), Postives = 137/283 (48.41%), Query Frame = 1
Query:  601 ILPT--GKQFVALDAAADQGHRETVRELLA-LGVDACGGPRRGVVGLCLAAQKEDVGMIAILREGGVVDTGKALCDATNQGREASVKFLLRLDWG---VPARRYVNVRNDLGFTPLW--IAVGSGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTPLGFVMDSIRQRNYRGGFATEEQVERMQAVRRLLLRVDAVRALSWLWRRSDNASGTARSAEEEVMDGDYPGRSAAAAAAALKVPIVRDRK-----RAATAAFFRYSNKP*PGSQPVSAQDKGGRV 1410
            +LP+  G  F+ LD A        VRELL  LG++ CGG  RGV  LCLA     VG++A+L   GVVD G AL  A  QG EASVKFLLR   G        YVN  N  G TPL   I  G  + RIVR+L+DAGAD     R T       +  T L  +   + ++  +G   T E+   +QA  RLLL+V+A  A+SW+W    ++              D P R    A A +++ +   R+     RA   A  RYS K       + +Q  GG++
Sbjct:  179 VLPSTGGVCFLPLDVAXXXXXSAVVRELLQRLGIERCGGESRGVDALCLAVTGRHVGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGKHSASRSAYVNKLNRFGLTPLLENITCGHCSARIVRLLVDAGADTTAAYRLTGKKGQAMAATTHLTAMGCLLLEKKAKGD--TGEEPHNLQATFRLLLQVEAAHAISWVWPTGSHSV-------------DRPPRRQRRAEAPVRLTLPMTRRDTGTRRALLGAVSRYSEK------SMYSQGGGGKL 440          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1443.3272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXH6_ECTSI1.140e-4144.96Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5K037_9PHAE1.920e-3947.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPY4_ECTSI3.080e-3839.54EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP... [more]
D7FNJ3_ECTSI8.540e-3647.09EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LPY3_ECTSI5.490e-3539.31EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1U9_ECTSI2.210e-3446.53EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KJA9_9PHAE6.820e-3439.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT11_ECTSI3.350e-3032.54EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSA9_9PHAE2.590e-2835.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY91_ECTSI1.300e-2536.40EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1443contigL-elsbetiae_contig1443:15762..19333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue5.7e-40
Seed eggNOG ortholog2880.D7FXH6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2757
Cds size1362
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1443.3272.1prot_L-elsbetiae_contig1443.3272.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1443 17193..19330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.4259663-UTR-L-elsbetiae_contig1443:15761..164391622815578.4259663-UTR-L-elsbetiae_contig1443:15761..16439Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1443 15762..16439 -
1691682970.5743713-UTR-L-elsbetiae_contig1443:15761..164391691682970.5743713-UTR-L-elsbetiae_contig1443:15761..16439Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1443 15762..16439 -
1622815578.4408422-UTR-L-elsbetiae_contig1443:16468..167971622815578.4408422-UTR-L-elsbetiae_contig1443:16468..16797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1443 16469..16797 -
1691682970.5865395-UTR-L-elsbetiae_contig1443:16468..167971691682970.5865395-UTR-L-elsbetiae_contig1443:16468..16797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1443 16469..16797 -
1622815578.4578989-UTR-L-elsbetiae_contig1443:16807..171921622815578.4578989-UTR-L-elsbetiae_contig1443:16807..17192Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1443 16808..17192 -
1691682970.5965836-UTR-L-elsbetiae_contig1443:16807..171921691682970.5965836-UTR-L-elsbetiae_contig1443:16807..17192Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1443 16808..17192 -
1622815578.498517-UTR-L-elsbetiae_contig1443:19330..193331622815578.498517-UTR-L-elsbetiae_contig1443:19330..19333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1443 19331..19333 -
1691682970.636397-UTR-L-elsbetiae_contig1443:19330..193331691682970.636397-UTR-L-elsbetiae_contig1443:19330..19333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1443 19331..19333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.471897-CDS-L-elsbetiae_contig1443:17192..172111622815578.471897-CDS-L-elsbetiae_contig1443:17192..17211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1443 17193..17211 -
1691682970.6100776-CDS-L-elsbetiae_contig1443:17192..172111691682970.6100776-CDS-L-elsbetiae_contig1443:17192..17211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1443 17193..17211 -
1622815578.4863925-CDS-L-elsbetiae_contig1443:17987..193301622815578.4863925-CDS-L-elsbetiae_contig1443:17987..19330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1443 17988..19330 -
1691682970.623777-CDS-L-elsbetiae_contig1443:17987..193301691682970.623777-CDS-L-elsbetiae_contig1443:17987..19330Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1443 17988..19330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1443.3272.1

>prot_L-elsbetiae_contig1443.3272.1 ID=prot_L-elsbetiae_contig1443.3272.1|Name=mRNA_L-elsbetiae_contig1443.3272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=454bp
MPWGDLHTAALEDNAELAEALLLSAAARVDTRSDDGGTPLMVAAQGGHER
VARALLHFGADVNIASESGWTALMMSAQNGHLAVAALLAGAGAEVDAEDC
EGDTALTAASSNGHAAVVDLLVGAGADLECACFQDAKRPLHKAAQGGHLA
VVGALVAAGADPECRTVVGETPLLLAALHGHLGVVRALLRARVDPAYPMI
LPTGKQFVALDAAADQGHRETVRELLALGVDACGGPRRGVVGLCLAAQKE
DVGMIAILREGGVVDTGKALCDATNQGREASVKFLLRLDWGVPARRYVNV
RNDLGFTPLWIAVGSGTPRIVRMLLDAGADVKKTCRNTNLWQFEGSRVTP
LGFVMDSIRQRNYRGGFATEEQVERMQAVRRLLLRVDAVRALSWLWRRSD
NASGTARSAEEEVMDGDYPGRSAAAAAAALKVPIVRDRKRAATAAFFRYS
NKP*
back to top

mRNA from alignment at L-elsbetiae_contig1443:15762..19333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1443.3272.1 ID=mRNA_L-elsbetiae_contig1443.3272.1|Name=mRNA_L-elsbetiae_contig1443.3272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3572bp|location=Sequence derived from alignment at L-elsbetiae_contig1443:15762..19333- (Laminarionema elsbetiae ELsaHSoW15)
AGGATGCCCTGGGGAGATCTCCACACCGCCGCGCTCGAAGACAACGCCGA GCTCGCGGAGGCCCTGCTCCTGTCCGCCGCGGCCCGCGTCGACACCCGCA GCGACGACGGCGGCACCCCCCTGATGGTCGCCGCCCAGGGGGGCCACGAG CGCGTCGCGAGGGCGCTGCTCCACTTCGGGGCGGACGTGAACATCGCGTC CGAGAGCGGGTGGACCGCTCTGATGATGTCCGCGCAGAACGGCCACCTCG CCGTCGCCGCGCTGCTGGCCGGCGCCGGGGCCGAGGTCGACGCGGAGGAC TGCGAGGGCGACACGGCCCTCACCGCGGCGTCGAGCAACGGCCACGCCGC GGTGGTCGACCTGCTGGTGGGCGCCGGCGCGGACCTCGAGTGCGCGTGCT TCCAGGATGCCAAGAGGCCCCTGCACAAGGCCGCGCAGGGGGGGCACCTC GCCGTGGTCGGCGCCCTGGTCGCGGCGGGCGCGGACCCGGAGTGCCGGAC GGTCGTCGGCGAGACGCCGCTGCTCCTCGCCGCCCTGCACGGGCACCTCG GCGTCGTCCGCGCGCTGCTTCGGGCGAGGGTGGACCCCGCCTACCCCATG ATCCTGCCGACCGGGAAGCAGTTCGTGGCGCTGGACGCGGCGGCGGACCA GGGGCACCGCGAGACGGTGCGCGAGCTGCTGGCCCTCGGGGTGGACGCCT GCGGGGGGCCCCGGCGGGGGGTGGTGGGCCTGTGCCTGGCGGCGCAGAAG GAGGACGTGGGCATGATAGCGATCCTGCGGGAAGGCGGAGTGGTCGACAC GGGGAAGGCGCTGTGCGACGCCACCAACCAGGGGCGCGAGGCGTCCGTGA AGTTCCTCCTGCGGCTGGACTGGGGGGTCCCCGCGCGGCGGTACGTGAAC GTCCGCAACGACCTCGGCTTCACCCCGCTGTGGATCGCCGTCGGGTCCGG GACTCCCAGGATCGTCCGCATGCTGCTCGACGCCGGGGCGGACGTCAAGA AGACCTGTCGGAACACGAACCTGTGGCAGTTCGAGGGGTCTCGCGTGACG CCGCTCGGCTTCGTGATGGACAGCATCCGGCAGCGGAACTACCGAGGGGG GTTCGCGACGGAGGAGCAGGTCGAGCGGATGCAAGCGGTCCGCCGGCTGC TGCTGCGCGTCGACGCCGTTCGCGCTCTCTCCTGGCTCTGGCGCCGCAGC GATAATGCTTCCGGCACCGCCCGCTCCGCGGAGGAGGAGGTGATGGATGG CGACTACCCTGGAAGATCGGCGGCGGCGGCGGCGGCGGCGCTAAAAGTGC CGATCGTGAGAGATCGAAAGCGAGCAGCCACCGCGGCCTTCTTCAGGTTA GCGTCGGGCCTCTTCTGCACCGGCGCGGACATTGTTTTTTTTTTTTTTTT TCCGCTTGCCGCGTTCGATGCTCTTGTGGAAGGAATCCCGTCCTGGTGGT TGCATGTGTGTGTGTGTGTGTTTTTTTTTTATGTTTTTACGGGAGAGAAG TGCGAAGCCACTTCCTCGCGAACCAACCGATAGAAGCCTACCGTAGGAAG AGTCGGGGTTGGTGGCACGGGGGCGCGGCCGCCTGTGATCCGTGGTGCAG AAGGAGAAGTTCCGTGGACGATCGTAAGCCTTTGATGGAACACACGCACA CGTGTTGTCCCCCCCCCCCTTCCTCACGTCAGTTTTTGTCTCGGCTCGCC GGTTGTCTCGCAGGGCGTGGCAGCGTCAAGCGTCTCTCTATGTCCATCTC TCTCTCTATCTCCATCTCCATCTCTCTCTCCCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTAACGTTAACCTAGTGTTGAGTTCATGTTTCC TTCAGGTGTGTCCCCCGCCCCCCCCCGGACCAACCTCCTCACGTCAGGTG TTTTTTTGGGCTCGCCGGTTGTCTCGCAGGGTGTGTCAGGATCAAGCGTC TCTCCATCTCTCTCCGTCTCTCTCAAATGTTAACCTAGTGTTGCTCATCA TATGTACATGCAAGGTGTATTTTCATGGCCAAGGGTAGATGGCATGATCG AGAACGACCGAAGATTGCCACTGATTGCATCGACTGCCTCCCGTGCGTTG CTCTCCACCGGCACGGGTGCAGGTATTCGAACAAGCCTTAGCCTGGGTCC CAGCCAGTCAGCGCACAGGACAAAGGAGGCCGTGTCTCTTGCCCCTTCTT CCAAAAGCTGAAGGCGGGACCCAACGACCGATTGGCACAGCAGTTAGTTC AGCGGCAGTTTCAGCTTTGGACTGCTCGCTCACAACTTTGGAGAGCACAT TGCTATTGACTTTGGAAATACGTAAGGAGCGTATAAACAGCGTAAAGAGG CGAGAGGGTGGATTGGCCCGCCTCGGCGTGGCTTTCGTGCGCCGTTTTTG GCTTTCGGAATGGGGTGTATATTGACGCACTTCTGACCCGGCGCTGGGGG CTGCAAATAGTGCGGTTCGCGAAGAGCCTTTTCATGCGTTTTCGCCACAG CTGTGTGCGCAAGAAGTTTTTTTTTTGTGGAGACAGTTTTTTTTTTTTTT TTCTTCACATGAGCTCGTATTATCGAGATTGCTAATTCAAAAAATCTATG TAGCAACTCACGGCCCGTGGGCACAGAAGTGCTAGAGCCATCAGAAGATC CGAAAAGGACATGCGCAGATCCACCGGACAAGGGTACATACACAAAGCCG AGGAGGTACACCTATACAGTATGTAGCAGCAGTAGTGGAGTTGCCGCTTC GCCGCGAGGCACCCACGCTTGTTTTTTTTGGGTTGATGTCCCAACGCGAC GAACTGTTGTTGGTTATTTTGCTCAGCTCGGATTCGAAGTATTTAGCATC GTGGTTGTAAGTCAACTTGAGTTTTTTTTTTTTTTGTGCGCCTTTTATGT GCCTGGTGTTCGGAGTTTTCAGGGGCTTTGCTTGTTGCCGCAGCTGTCTC GAGAGTTCCGAAAAAAATGTAGGTGGGCGTGTATTATTTCCAGTACTTAC TCCCTGGGTCGATCCGGCACCAGCTTTTTAAGATGATTTGTTTTTAGAAG TGAACGTTGAAAAGGCGGAGGATTGAAACTGCTGCGGTGCTGTTGCTGTA GTTGTTGCTGGTTCTGTGTGCGGCGGAAATGCTCGGGTCGGCCCCGTGCG AAAGTTAAGTGTGTCCCCCTGGAACGAATTTGTGACGAGTTGGACGTAGA ATGACGTACATAGAATGCTGACGTTTTGTAGAACAATTTGTAAAACTTCC AGATCATATCCTCCACGAGCTTCCAGCTTCCGCTGCAGTACCACGATGCA CGCCGATACCAAAGGCTGCATCACCAGATCTGGGCTAATATTGCGCAAGC CTTTGCGCGACATCTCGTTGGGGAAAAGTGCACGGACGATGCCGTATGTA CATTCTAGCGCCTTCACTCCGAGCGCGTAGGCCAGCGCGTGGACTGCATA CTTCCTCTGTCCCATAAGTCTGTATCGTTGTGGGCGTTTGACCTTATGGA TGTAAACGTATTGACGACTGCCTTGTTGTTGGGTTCATTGGAAAGATGTA AGCACAGACGAAGCTAGTGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1443:15762..19333-

>mRNA_L-elsbetiae_contig1443.3272.1 ID=mRNA_L-elsbetiae_contig1443.3272.1|Name=mRNA_L-elsbetiae_contig1443.3272.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2724bp|location=Sequence derived from alignment at L-elsbetiae_contig1443:15762..19333- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCTGGGGAGATCTCCACACCGCCGCGCTCGAAGACAACGCCGAGCT
CGCGGAGGCCCTGCTCCTGTCCGCCGCGGCCCGCGTCGACACCCGCAGCG
ACGACGGCGGCACCCCCCTGATGGTCGCCGCCCAGGGGGGCCACGAGCGC
GTCGCGAGGGCGCTGCTCCACTTCGGGGCGGACGTGAACATCGCGTCCGA
GAGCGGGTGGACCGCTCTGATGATGTCCGCGCAGAACGGCCACCTCGCCG
TCGCCGCGCTGCTGGCCGGCGCCGGGGCCGAGGTCGACGCGGAGGACTGC
GAGGGCGACACGGCCCTCACCGCGGCGTCGAGCAACGGCCACGCCGCGGT
GGTCGACCTGCTGGTGGGCGCCGGCGCGGACCTCGAGTGCGCGTGCTTCC
AGGATGCCAAGAGGCCCCTGCACAAGGCCGCGCAGGGGGGGCACCTCGCC
GTGGTCGGCGCCCTGGTCGCGGCGGGCGCGGACCCGGAGTGCCGGACGGT
CGTCGGCGAGACGCCGCTGCTCCTCGCCGCCCTGCACGGGCACCTCGGCG
TCGTCCGCGCGCTGCTTCGGGCGAGGGTGGACCCCGCCTACCCCATGATC
CTGCCGACCGGGAAGCAGTTCGTGGCGCTGGACGCGGCGGCGGACCAGGG
GCACCGCGAGACGGTGCGCGAGCTGCTGGCCCTCGGGGTGGACGCCTGCG
GGGGGCCCCGGCGGGGGGTGGTGGGCCTGTGCCTGGCGGCGCAGAAGGAG
GACGTGGGCATGATAGCGATCCTGCGGGAAGGCGGAGTGGTCGACACGGG
GAAGGCGCTGTGCGACGCCACCAACCAGGGGCGCGAGGCGTCCGTGAAGT
TCCTCCTGCGGCTGGACTGGGGGGTCCCCGCGCGGCGGTACGTGAACGTC
CGCAACGACCTCGGCTTCACCCCGCTGTGGATCGCCGTCGGGTCCGGGAC
TCCCAGGATCGTCCGCATGCTGCTCGACGCCGGGGCGGACGTCAAGAAGA
CCTGTCGGAACACGAACCTGTGGCAGTTCGAGGGGTCTCGCGTGACGCCG
CTCGGCTTCGTGATGGACAGCATCCGGCAGCGGAACTACCGAGGGGGGTT
CGCGACGGAGGAGCAGGTCGAGCGGATGCAAGCGGTCCGCCGGCTGCTGC
TGCGCGTCGACGCCGTTCGCGCTCTCTCCTGGCTCTGGCGCCGCAGCGAT
AATGCTTCCGGCACCGCCCGCTCCGCGGAGGAGGAGGTGATGGATGGCGA
CTACCCTGGAAGATCGGCGGCGGCGGCGGCGGCGGCGCTAAAAGTGCCGA
TCGTGAGAGATCGAAAGCGAGCAGCCACCGCGGCCTTCTTCAGATGCCCT
GGGGAGATCTCCACACCGCCGCGCTCGAAGACAACGCCGAGCTCGCGGAG
GCCCTGCTCCTGTCCGCCGCGGCCCGCGTCGACACCCGCAGCGACGACGG
CGGCACCCCCCTGATGGTCGCCGCCCAGGGGGGCCACGAGCGCGTCGCGA
GGGCGCTGCTCCACTTCGGGGCGGACGTGAACATCGCGTCCGAGAGCGGG
TGGACCGCTCTGATGATGTCCGCGCAGAACGGCCACCTCGCCGTCGCCGC
GCTGCTGGCCGGCGCCGGGGCCGAGGTCGACGCGGAGGACTGCGAGGGCG
ACACGGCCCTCACCGCGGCGTCGAGCAACGGCCACGCCGCGGTGGTCGAC
CTGCTGGTGGGCGCCGGCGCGGACCTCGAGTGCGCGTGCTTCCAGGATGC
CAAGAGGCCCCTGCACAAGGCCGCGCAGGGGGGGCACCTCGCCGTGGTCG
GCGCCCTGGTCGCGGCGGGCGCGGACCCGGAGTGCCGGACGGTCGTCGGC
GAGACGCCGCTGCTCCTCGCCGCCCTGCACGGGCACCTCGGCGTCGTCCG
CGCGCTGCTTCGGGCGAGGGTGGACCCCGCCTACCCCATGATCCTGCCGA
CCGGGAAGCAGTTCGTGGCGCTGGACGCGGCGGCGGACCAGGGGCACCGC
GAGACGGTGCGCGAGCTGCTGGCCCTCGGGGTGGACGCCTGCGGGGGGCC
CCGGCGGGGGGTGGTGGGCCTGTGCCTGGCGGCGCAGAAGGAGGACGTGG
GCATGATAGCGATCCTGCGGGAAGGCGGAGTGGTCGACACGGGGAAGGCG
CTGTGCGACGCCACCAACCAGGGGCGCGAGGCGTCCGTGAAGTTCCTCCT
GCGGCTGGACTGGGGGGTCCCCGCGCGGCGGTACGTGAACGTCCGCAACG
ACCTCGGCTTCACCCCGCTGTGGATCGCCGTCGGGTCCGGGACTCCCAGG
ATCGTCCGCATGCTGCTCGACGCCGGGGCGGACGTCAAGAAGACCTGTCG
GAACACGAACCTGTGGCAGTTCGAGGGGTCTCGCGTGACGCCGCTCGGCT
TCGTGATGGACAGCATCCGGCAGCGGAACTACCGAGGGGGGTTCGCGACG
GAGGAGCAGGTCGAGCGGATGCAAGCGGTCCGCCGGCTGCTGCTGCGCGT
CGACGCCGTTCGCGCTCTCTCCTGGCTCTGGCGCCGCAGCGATAATGCTT
CCGGCACCGCCCGCTCCGCGGAGGAGGAGGTGATGGATGGCGACTACCCT
GGAAGATCGGCGGCGGCGGCGGCGGCGGCGCTAAAAGTGCCGATCGTGAG
AGATCGAAAGCGAGCAGCCACCGCGGCCTTCTTCAGGTATTCGAACAAGC
CTTAGGTATTCGAACAAGCCTTAG
back to top