mRNA_L-elsbetiae_contig1427.3168.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1427.3168.1
Unique NamemRNA_L-elsbetiae_contig1427.3168.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 2.300e-58
Identity = 98/160 (61.25%), Postives = 116/160 (72.50%), Query Frame = 1
Query:    4 ALGDGAITDLKTKTNDDLKNIYRLCY--RSGISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVDGSFQMTSESAGDGVDIVAHMLVRPCLVVTDIPCMMAPIAERLHPGMLQDGGALPRDSEGQVCLKELQHLGAH 477
            ALGD AITDL +K+  DLKNIY LC+  R GISR+  KD LV+C   LW S    G GERCSKLFIGK  GTTAG EG  T DG++    FQ+ +ESA D VD+ AH LV P L++TDIPCM+APIAERLHP +L++ G LPRD++G V L  LQHLGAH
Sbjct:  169 ALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAH 328          
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.210e-51
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 1
Query:  154 GENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVDGSFQMTSESAGDGVDIVAHMLVRPCLVVTDIPCMMAPIAERLHPGMLQDGGALPRDSEGQVCLKELQHLGAH 477
            GE GEGERCSKLF+GKPSGTTAG EG  TTDG+ V G+FQ+T ESA D VDI+AH+LV+PCLV+TDIPC + PIAERL PG+LQDGG LPRD+EGQVCLKELQH+GAH
Sbjct:    2 GEQGEGERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAH 109          
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 7.110e-39
Identity = 82/175 (46.86%), Postives = 102/175 (58.29%), Query Frame = 1
Query:    4 ALGDGAITDLKTKTNDDLKNIYRLCY-----------------RSGISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVDGSFQMTSESAGDGVDIVAHMLVRPCLVVTD-IPCMMAPIAERLHPGMLQDGGALPRDSEGQVCLKELQHLGA 474
            ALGDGAITDL  KT DDL+NIYRLCY                 R  + R+   +LL++CLT  W+S G  G+ ERCS++FIGKPSG T G EG+  TDG++    FQ+  ESA DGVDI++H      +      P           P     GGALPR++E QVCLKELQH+GA
Sbjct:   56 ALGDGAITDLSNKTKDDLQNIYRLCYPPPARVSASDFWSRQRTRPCVQRFPPLELLIQCLTRPWESAGI-GDRERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISHRQSSTTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGA 229          
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: A0A6H5KB28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB28_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 7.780e-36
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 1
Query:    4 ALGDGAITDLKTKTNDDLKNIYRLCY--RSGISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAG-FEGVLTTDGIVVDGSFQMTSESAGDGVDIVAHMLVRPC 336
            ALGDGAITDL  K   DL+NIYRLC+    GIS Y TK+LLV+CL  LW+S G +GEGERCSKLFIGKPSG+TAG  EG+ T D ++V   FQ+T+ES  D VD++ H+LV  C
Sbjct:  194 ALGDGAITDLSDKPVSDLENIYRLCFIDGKGISMYPTKELLVQCLQKLWESAGADGEGERCSKLFIGKPSGSTAGGVEGLFTGDRVMVAHVFQITAESPADAVDMLVHLLVTYC 307          
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 9.820e-34
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1
Query:    4 ALGDGAITDLKTKTNDDLKNIYRLCYRSG--ISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVDGSFQMTSESAGDGVDIVAHMLVRPCLVVT 348
            ALGDGAITDL  K+  DLKNIYRLC+  G  IS Y TK+LL +CL  LW+    +GEGERC KLFIGKPSG+TAG EG+ T DG++    FQ+T+ES  D VD++ H+ V  C + T
Sbjct:  132 ALGDGAITDLSDKSFGDLKNIYRLCFPDGKGISMYPTKELLAQCLQKLWELA--DGEGERCLKLFIGKPSGSTAGVEGLFTGDGVMAAHVFQITAESPADAVDMLVHLPVSYCTLST 246          
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: A0A6H5JL59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL59_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.500e-25
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    4 ALGDGAITDLKTKTNDDLKNIYRLCYRSGISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVDGSFQMTSESAGDGVDIVAHMLVRPC 336
            ALGDGA+TDL  K+                      +LLV+CL  LW+S G +GE ERCSKLFIGKPSG+TAG EG+ T DG++V   FQ+T+ES  D VD++ H+LV  C
Sbjct:   58 ALGDGAVTDLSDKS----------------------ELLVQCLQKLWESAGADGERERCSKLFIGKPSGSTAGVEGLFTGDGVMVAHVFQITAESPADAVDMLVHLLVSYC 146          
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: A0A6H5JY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY55_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.590e-25
Identity = 55/111 (49.55%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 ALGDGAITDLKTKTNDDLKNIYRLCYRSG--ISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVDGSFQMTSESAGDGVDIVAHMLVR 330
            AL  G + DL  KT DDLKNIYRLC+  G  IS Y  K+  + C   LW+      E +RCSK+FI +PSG TAG EG+ T DG+V     Q+TSES  D VD + H+ VR
Sbjct:   58 ALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVTSESPADVVDTMRHLAVR 168          
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.200e-23
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1
Query:  121 VECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVDGSFQMTSESAGDGVDIVAHMLVRPCLVVTDIPCMMAPIAERLHPGMLQDGGALPRDSEGQVCLKELQHLGA 474
            + C   LW+      E +RCSK+FI +PSG TAG EG+ T DG+V     Q+               +  P ++VTDIPCM+AP AE+  PG+LQ+GGALPR+++GQV L  LQH+GA
Sbjct:   93 IGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGA 210          
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: A0A6H5KB33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB33_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.710e-17
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    4 ALGDGAITDLKTKTNDDLKNIYRLCYRSG--ISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVV 258
            AL  G + DL  KT DDLKNIYRLC+  G  IS Y  K+  + C   LW+      E +RCSK+FI +PSG TAG EG+ T DG+ +
Sbjct:  150 ALNGGGMDDLNEKTLDDLKNIYRLCFPGGRGISAYTKKEDFIGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVTL 236          
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.270e-16
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1
Query:  310 VAHMLVRPCLVVTDIPCMMAPIAERLHPGMLQDGGALPRDSEGQVCLKELQHLGA 474
            +A   V+PCLV+TDIPCM+APIA++ HP +L +GGALPR++EGQV LK LQH+GA
Sbjct:   10 IATTKVQPCLVITDIPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGA 64          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1427.3168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LKH0_ECTSI2.300e-5861.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3W5_9PHAE3.210e-5176.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN3_9PHAE7.110e-3946.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB28_9PHAE7.780e-3661.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEL5_9PHAE9.820e-3457.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL59_9PHAE3.500e-2549.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY55_9PHAE4.590e-2549.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W4_9PHAE5.200e-2345.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB33_9PHAE1.710e-1749.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKI4_9PHAE7.270e-1665.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1427contigL-elsbetiae_contig1427:18701..19938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size479
Cds size477
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1427.3168.1prot_L-elsbetiae_contig1427.3168.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1427 18702..19938 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.8880777-CDS-L-elsbetiae_contig1427:18701..188541622815569.8880777-CDS-L-elsbetiae_contig1427:18701..18854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 18702..18854 -
1691682965.5431-CDS-L-elsbetiae_contig1427:18701..188541691682965.5431-CDS-L-elsbetiae_contig1427:18701..18854Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 18702..18854 -
1622815569.901162-CDS-L-elsbetiae_contig1427:19432..196581622815569.901162-CDS-L-elsbetiae_contig1427:19432..19658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 19433..19658 -
1691682965.5513248-CDS-L-elsbetiae_contig1427:19432..196581691682965.5513248-CDS-L-elsbetiae_contig1427:19432..19658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 19433..19658 -
1622815569.9137533-CDS-L-elsbetiae_contig1427:19840..199381622815569.9137533-CDS-L-elsbetiae_contig1427:19840..19938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 19841..19938 -
1691682965.5588288-CDS-L-elsbetiae_contig1427:19840..199381691682965.5588288-CDS-L-elsbetiae_contig1427:19840..19938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 19841..19938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1427.3168.1

>prot_L-elsbetiae_contig1427.3168.1 ID=prot_L-elsbetiae_contig1427.3168.1|Name=mRNA_L-elsbetiae_contig1427.3168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
LALGDGAITDLKTKTNDDLKNIYRLCYRSGISRYNTKDLLVECLTTLWKS
TGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVDGSFQMTSESAGDG
VDIVAHMLVRPCLVVTDIPCMMAPIAERLHPGMLQDGGALPRDSEGQVCL
KELQHLGAH
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mRNA from alignment at L-elsbetiae_contig1427:18701..19938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1427.3168.1 ID=mRNA_L-elsbetiae_contig1427.3168.1|Name=mRNA_L-elsbetiae_contig1427.3168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1238bp|location=Sequence derived from alignment at L-elsbetiae_contig1427:18701..19938- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCACTCGGCGACGGCGCCATCACCGATCTCAAGACCAAGACCAACGA TGACCTGAAAAACATCTACAGGCTCTGCTATCGCTCTGGCATCAGCAGGT GCGTTCCGGCGTTGCGGACGTACGTCTTCCCTCGTTAGAAAGGTTTGGTG GTCTTGACGTAATTCCTCGTAAGAATCATTTTGTGGTCTGGTGGGTGCAC GCTTGCTCGTGAAACTACTCCCTGAGACATTTCGTCACACCTCCATGCTC TTCGTTCGATAATGTTGGCCTCATGAGCAGGTACAACACCAAGGACCTTC TAGTCGAGTGCCTCACAACGCTCTGGAAGTCCACGGGAGAGAATGGCGAG GGGGAACGATGCTCGAAGCTGTTCATCGGCAAGCCATCAGGGACAACGGC AGGATTCGAAGGTGTCCTTACCACCGACGGAATCGTGGTTGATGGCAGCT TCCAGATGACGTCGGAGAGTGCCGGGGACGGGGTGGACATTGTGGCGCAC ATGCTGGTGAGAAAGTGGTACCCTTCCAACAGGGCAATACATTCCGGTGC CTCTGGCCGAGACATGCCGTGTCCATGATAGAACATACTACATGAAATAG GTAGTCCCCCTTCAAACTTCCACCCGGGGCCTTTTTGTTATATTCCGGTT TTGTTTATTGTTTGGGTTGAGGTGGACCCGTTACGTTATCTGCTCGGTTC GGAATGTTGTAGCTGCCGCGTTCAGTGCTCAACTCTGTGAGTGGCACGCT TGTTGATCCACGAGCGCACCAAATCGAGGGTTCCAGACAGCGTGGGGAAT ACGCACCTAGTACTTGTTGGTATTGTTGTATTTTCGTCCGTGTTCTTTGC TACATGCGTTGTATGTTGGCGTTCAACATTCTACGTGCAGTGTTCATGGG GTGTCGATGGGATTTTAGGCTAGCGTCGGGAACGTGGTTGTTGGCGGTGT TTAGACCCGACGTGTCTTTTGCAACGATGGAGAAATCGTGTAGTACACTC GCGACCTCCCCAGGATTTTATTTGGCGTTTTCTCAATGATGCATGCTGCA TGCCGTTCCCGTGTTGTTTTTCGTTGCTGTCAAGGTACGACCATGCCTCG TGGTCACGGATATACCATGCATGATGGCACCGATTGCCGAGAGGCTTCAC CCCGGTATGCTGCAAGACGGCGGCGCCCTGCCTCGTGACTCCGAAGGCCA AGTTTGCTTGAAAGAACTGCAGCACCTTGGAGCCCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1427:18701..19938-

>mRNA_L-elsbetiae_contig1427.3168.1 ID=mRNA_L-elsbetiae_contig1427.3168.1|Name=mRNA_L-elsbetiae_contig1427.3168.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig1427:18701..19938- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCACTCGGCGACGGCGCCATCACCGATCTCAAGACCAAGACCAACGA
TGACCTGAAAAACATCTACAGGCTCTGCTATCGCTCTGGCATCAGCAGCT
CGCACTCGGCGACGGCGCCATCACCGATCTCAAGACCAAGACCAACGATG
ACCTGAAAAACATCTACAGGCTCTGCTATCGCTCTGGCATCAGCAGGTAC
AACACCAAGGACCTTCTAGTCGAGTGCCTCACAACGCTCTGGAAGTCCAC
GGGAGAGAATGGCGAGGGGGAACGATGCTCGAAGCTGTTCATCGGCAAGC
CATCAGGGACAACGGCAGGATTCGAAGGTGTCCTTACCACCGACGGAATC
GTGGTTGATGGCAGCTTCCAGATGACGTCGGAGAGTGCCGGGGACGGGGT
GGACATTGTGGCGCACATGCTGGTACAACACCAAGGACCTTCTAGTCGAG
TGCCTCACAACGCTCTGGAAGTCCACGGGAGAGAATGGCGAGGGGGAACG
ATGCTCGAAGCTGTTCATCGGCAAGCCATCAGGGACAACGGCAGGATTCG
AAGGTGTCCTTACCACCGACGGAATCGTGGTTGATGGCAGCTTCCAGATG
ACGTCGGAGAGTGCCGGGGACGGGGTGGACATTGTGGCGCACATGCTGGT
ACGACCATGCCTCGTGGTCACGGATATACCATGCATGATGGCACCGATTG
CCGAGAGGCTTCACCCCGGTATGCTGCAAGACGGCGGCGCCCTGCCTCGT
GACTCCGAAGGCCAAGTTTGCTTGAAAGAACTGCAGCACCTTGGAGCCCA
TGTACGACCATGCCTCGTGGTCACGGATATACCATGCATGATGGCACCGA
TTGCCGAGAGGCTTCACCCCGGTATGCTGCAAGACGGCGGCGCCCTGCCT
CGTGACTCCGAAGGCCAAGTTTGCTTGAAAGAACTGCAGCACCTTGGAGC
CCAT
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