mRNA_L-elsbetiae_contig14218.3133.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14218.3133.1
Unique NamemRNA_L-elsbetiae_contig14218.3133.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: D8LRT5_ECTSI (Serine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRT5_ECTSI)

HSP 1 Score: 521 bits (1342), Expect = 4.310e-180
Identity = 278/347 (80.12%), Postives = 308/347 (88.76%), Query Frame = 1
Query:   22 MITPCARIMAVATIATTRCGSFLYGGSRFARTGARGGKQFTALHLSSTQVEHSSSSTQS--RGNADDASLDSLLISSNPTLVIEHMKARRMGEDSVEAVNRIRELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQADEAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEYIKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKTNHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV*MLCISLAVPCPTVVGGS 1056
            MITPCAR+MAVAT ATTRCGSFLYGG+RFARTGA   KQF ALH SS QVE ++   +S  R NADDASLDS+LIS+NP LV++HMKARRMGEDSVEAV+RI +L+D+RRE IMTKEDALKQR+A    I GKLMKAGQA EA+EKK EV+SINK+AGSAEEDLN+VD ELNTLLMRLPNLLDSRVPDGDGEEENVVV+EWGQEYIK GEE++WHDEVA KLGGWDPEGAA+ISGARFSVLKGPLARLERA+GQWLLD+HT EHGYTEVS+PLLVTRSSLEGTGQLPKFE+DLFKTNHL ANEDSFLIPTGEVPLTNLLRGQ+LDKAQ+ M  ++L  PC     GS
Sbjct:    1 MITPCARVMAVATFATTRCGSFLYGGARFARTGA---KQFAALH-SSAQVEQTTKDHESLSRSNADDASLDSVLISTNPDLVVDHMKARRMGEDSVEAVHRIGDLMDNRRELIMTKEDALKQRNAMSAQI-GKLMKAGQAKEAEEKKNEVQSINKIAGSAEEDLNEVDSELNTLLMRLPNLLDSRVPDGDGEEENVVVAEWGQEYIKNGEEYLWHDEVAIKLGGWDPEGAARISGARFSVLKGPLARLERALGQWLLDVHTTEHGYTEVSLPLLVTRSSLEGTGQLPKFEEDLFKTNHLVANEDSFLIPTGEVPLTNLLRGQLLDKAQLPMSLVALT-PCFRAEAGS 341          
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: A0A835YK02_9STRA (Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK02_9STRA)

HSP 1 Score: 308 bits (790), Expect = 1.800e-96
Identity = 157/286 (54.90%), Postives = 209/286 (73.08%), Query Frame = 1
Query:  199 RGNADDASLDSLLISSNPTLVIEHMKARRMGEDSVEAVNRIRELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQADEAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEYIKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKTNHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV*MLCISLAVPCPTVVGGS 1056
            R +AD  SLD+ +++  P +V+ +++ARR G++++E V+ I  L++ R   I  ++ AL  R      I GKLMK G+  +    K +V   N  AG+A+ +L +VD  +N + MRLPNLLD+RV DG  E++N +V EWGQEYIK G+E++WHD++AT+LGGWDPEGA++++GARFSVLKG LARLERA+GQW LD+HT EHGY EV+VPLLVTRS LEGTGQLPKFEDDLF+TNH    EDSFLIPT EVPLTNL+RGQ+LD++ +  L  +   PC     GS
Sbjct:   80 RLSADGVSLDAQVVAKQPDIVLSNLRARRAGDEAIETVSSIGGLMEQRTGLIRKRDAALNTRKTLSAQI-GKLMKEGKEGDVAAIKEQVAMANAEAGAADAELAEVDERVNDMFMRLPNLLDARVVDGSDEKDNELVLEWGQEYIKEGDEYLWHDDIATRLGGWDPEGASRVAGARFSVLKGQLARLERALGQWFLDVHTQEHGYQEVNVPLLVTRSVLEGTGQLPKFEDDLFQTNHKVGGEDSFLIPTAEVPLTNLVRGQMLDESDL-PLAFAALTPCFRAEAGS 363          
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: A0A7S2UWA1_9STRA (Serine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWA1_9STRA)

HSP 1 Score: 294 bits (753), Expect = 1.860e-91
Identity = 161/280 (57.50%), Postives = 205/280 (73.21%), Query Frame = 1
Query:  226 DSLLISSNPTLVIEHMKARRMGEDSVEAVNRIRELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQADEAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEY-IKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKTNHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV*MLCISLA--VPCPTVVGGS 1056
            DS  ++ N   V  H+ ARR GE+ +EAV++I  L++ R   I TK+ AL  R +    I GKLMKAG+ D A+EKK EVE  N+ A +AE +LN+VD E+NTL   LPNLLD R  DGD + +N VVSEWG E  +K+GE+++WHD++A  +GGWDP+ ++ ISGARFSVL+GPLARLERAIGQ+ LD HT ++GY EVSVP +VTRS+LEGTGQLPKFE+DLFK NH+AA ED+FLIPT EVPLT+LLRG++LD     +L ISL    PC     GS
Sbjct:   55 DSRYVAQNGDSVKAHLLARRAGEEQLEAVDKIGVLMEKRLALIKTKDGALSIRKSVSAEI-GKLMKAGEKDAAEEKKKEVEVANQQADAAEAELNEVDAEVNTLFAGLPNLLDPRTVDGDDDTQNEVVSEWGTEGGLKKGEQYLWHDDIALGVGGWDPDASSAISGARFSVLRGPLARLERAIGQFFLDEHTQKNGYEEVSVPYVVTRSTLEGTGQLPKFEEDLFKVNHVAAGEDAFLIPTAEVPLTSLLRGKVLDPK---ILPISLTGLTPCFRAEAGS 330          
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: A0A7S3Z8C3_9EUKA (Serine--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8C3_9EUKA)

HSP 1 Score: 278 bits (712), Expect = 2.130e-85
Identity = 150/270 (55.56%), Postives = 188/270 (69.63%), Query Frame = 1
Query:  193 QSRGNADDASLDSLLISSNPTLVIEHMKARRMGEDSVEAVNRIRELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQADEAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEYIKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKTNHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV 1002
            + R +A     D  L+  NP +V+EH+KARR  ED + AV  I +L + RR+ I  ++ AL +R  T    IGKLMK+G    A+E K +V + N  A  AE  L +V+GE N L  RLPNLLD RVPDGD EE N +V+ WG+EYIK+GE+  WHDE+A  LGG+ PE A K+SG+RFSVL+GPLARLERA+  ++LD HT EHGY E SVP LV+R  LEGTGQLPKFEDDLFKTNH  +  DSFLIPT EVPLT+L R  IL ++ +
Sbjct:   14 EQRVDAQTVDYDLRLLQDNPEVVLEHLKARRAKEDVLAAVGTISKLNERRRQLIKERDAALNKRK-TLSAEIGKLMKSGDQAAAEEIKAQVSAANAQAAEAEATLAEVEGECNALFARLPNLLDQRVPDGDSEENNELVTLWGEEYIKKGEDMKWHDELAATLGGYAPEAAVKVSGSRFSVLRGPLARLERALSAFMLDTHTLEHGYEEHSVPYLVSRQVLEGTGQLPKFEDDLFKTNHDISGMDSFLIPTAEVPLTSLYRDDILQESNL 282          
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: W7TYV7_9STRA (Serine--tRNA ligase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYV7_9STRA)

HSP 1 Score: 270 bits (689), Expect = 1.760e-81
Identity = 143/278 (51.44%), Postives = 194/278 (69.78%), Query Frame = 1
Query:  223 LDSLLISSNPTLVIEHMKARRMGEDSVEAVNRIRELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQADEAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEYIKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKTNHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV*MLCISLAVPCPTVVGGS 1056
            LD  L++  P LV+ H++ARR  ++   +V+ I +L   R+E +  ++ AL QR +    I GKLM+  Q  EA + K +VE  N VA +AEE L++++ E+++L++++PNLLD RVPDGD E  N VV EWG E  K GE ++WHD++A KLGG+DP  AA++SGARFS+L GPLARLERAI Q+ LD HT E+GY EVSVP +V+RS+L GTGQLPKFE+DLF  NH    ED+FLIPT EVP+TNL R +IL+  Q+ +  + L  PC     GS
Sbjct:   85 LDVKLVTEEPDLVLAHLEARRASDEQASSVSDIADLYLRRKELVKEQQGALTQRKSLSAEI-GKLMREKQDAEAAKLKTQVEYANSVASTAEEQLHQLEREMDSLMLQMPNLLDDRVPDGDDELNNEVVLEWGVERRKVGERYLWHDDIAAKLGGYDPAAAARLSGARFSILSGPLARLERAIVQFFLDQHTAENGYREVSVPYIVSRSTLTGTGQLPKFEEDLFAVNHQVNGEDAFLIPTAEVPITNLHRDEILEATQLPLSYVGLT-PCFRAEAGS 360          
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: A0A7S3Y0F1_HETAK (Serine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0F1_HETAK)

HSP 1 Score: 246 bits (627), Expect = 1.100e-72
Identity = 140/291 (48.11%), Postives = 183/291 (62.89%), Query Frame = 1
Query:  184 SSTQSRGNADDASLDSLLISSNPTLVIEHMKARRMGEDSVEAVNRIRELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQADEAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEYIKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKTNHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV*MLCISLAVPCPTVVGGS 1056
            S+T +R + D A+ D+  ++ NP  +  H+ ARR G + + +V RI EL  +RRE I  ++ AL  R A    I G+ MKAG  + A  KK EV                             NLLD+ VP+GD + +N +V EW  + +KRGEE++WHDE+A KLGG+ PE AA++SGARFSVL GP+ARLERA+ Q+ LD+HT EHGY EV+ P +VTRS+L GTGQLPKFEDDLFK +H AA ED+FLIPT EVPLTNL RG+IL+   +  L  +   PC     GS
Sbjct:   45 STTVARFDPDGAAYDARFVAENPEGIRAHLAARRAGAEQLASVGRIEELSGARRELIGRRDAALGVRKALSAEI-GQAMKAGDQELAAAKKAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLDAAVPEGDDDGQNELVREWNTDNLKRGEEYLWHDEIAAKLGGFLPESAARLSGARFSVLAGPVARLERALMQFALDLHTLEHGYLEVATPYIVTRSTLRGTGQLPKFEDDLFKVSHEAAGEDAFLIPTSEVPLTNLHRGEILEGKAL-PLAFAACTPCFRAEAGS 333          
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: A0A7S3MC65_9STRA (Serine--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MC65_9STRA)

HSP 1 Score: 234 bits (597), Expect = 6.050e-68
Identity = 128/265 (48.30%), Postives = 179/265 (67.55%), Query Frame = 1
Query:  208 ADDASLDSLLISSNPTLVIEHMKARRMGEDSVEAVNRIRELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQADEAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEYIKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKTNHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV 1002
            A++ SLD+ L+S  P LVI H+++R++   +++ V  +++L   R+  I     A   R      I G L+K  + DE  E K +VE+ ++ + +A+E L  ++  ++ +   LPNLLD  VP+G  E  NVV   WG E  K GEE++WHD++A K+ G D E A ++SGARFSVL GP+ARLERA+ Q++LD HT E GYTEVSVP +V+RS+LEGTGQLPKFEDDLF+ NH A  E++FLIPT EVPLTNL R QIL ++ +
Sbjct:   52 ANELSLDTNLLSEQPDLVISHLQSRKVDPLTLDKVFAVKDLQTERKTLIFNSNTAKNVRKVLSKEI-GALLKQEKHDEVAELKAKVEAAHQTSSAADEKLTHIEKSIHDIWASLPNLLDDSVPEGHDEAHNVVEFTWGAENRKIGEEYLWHDDLARKVHGIDLEAANRMSGARFSVLLGPVARLERALTQFMLDRHT-ERGYTEVSVPFIVSRSTLEGTGQLPKFEDDLFQVNHTAGGEEAFLIPTAEVPLTNLFREQILYESDL 314          
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: F0Y990_AURAN (Serine--tRNA ligase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y990_AURAN)

HSP 1 Score: 227 bits (579), Expect = 1.260e-65
Identity = 138/305 (45.25%), Postives = 190/305 (62.30%), Query Frame = 1
Query:  100 SRFARTGARGGKQFTALHLSSTQVEHSSSSTQSRGNADDASLDSLLISSNPTLVIEHMKARRMGEDSVEAVNRIRELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQAD-EAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEYIKRGEE--FIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKT-NHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV 1002
            S  AR G     +F+A+          + +  +R +A   SL+   +  +   V  H++AR+  E++V +V+R+  L + R      ++ AL  R A     IGK MK G A+ +    K EV +   VA  AE  +  ++ E N L   LPNLLD   PDG GE ENVVV+EWG +  K G+E  ++WHD++A  LGG+D E A+K+SGARF+VL+G +ARLERA+G + LDMHT+  GY EVS P++V RS+LEGTGQLPKFEDDLFK  NH    ED+FLIPT EVPLTNL+ G IL+++ +
Sbjct:   10 SGLARRGRASSARFSAV----------ADAVSTRPSAAGVSLELRTLKDHADTVKAHVRARQGSEETVASVDRMVALTEQRAAAQRERDAALSTRKALSG-DIGKAMKTGAAEADVAALKAEVAASADVAEGAEATMAALEEEANALFAALPNLLDDATPDGAGETENVVVAEWGTDSRKLGDEGDYLWHDDLAAGLGGFDAEAASKVSGARFAVLRGGVARLERALGAFFLDMHTDGGGYEEVSSPVIVARSALEGTGQLPKFEDDLFKLDNHKVRGEDAFLIPTAEVPLTNLVAGDILEESDL 303          
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: A0A8J5X803_DIALT (Serine--tRNA ligase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X803_DIALT)

HSP 1 Score: 227 bits (579), Expect = 1.710e-65
Identity = 134/279 (48.03%), Postives = 176/279 (63.08%), Query Frame = 1
Query:  220 SLDSLLISSNPTLVIEHMKARRMGEDSVEAVNRIRELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQADEAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEYIKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKTNHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV*MLCISLAVPCPTVVGGS 1056
            SLD+ L+S +P +V E ++ RR   + + A+  I EL     +        L  R    P I G L+K G   EA+  K +V + +  A   EE L  V+ E   LL  LPNLLD RVPDG  + +N +VS+W      R E   WHDE+AT+LGG D +GAAKISGARFSVL+GP+ARLERA+  + LD+HT +HGYTE++VP++V R +LEGTGQLPKFEDDLFK +      D+FLIPT EVPLTNLL G+IL +A + +  ++L  PC     GS
Sbjct:   56 SLDAKLVSDSPDVVAESLRRRRAPAEQLRALETIGELQRRYAQLSFEVSSQLGVRKQLSPQI-GALLKQGNEAEAEVLKEQVAAASAEAKRLEELLAAVELERAALLDALPNLLDPRVPDGADDTDNELVSQWQPAAGVRPETGDWHDEIATRLGGLDVDGAAKISGARFSVLRGPIARLERALANFFLDLHTGQHGYTEMAVPVIVGRGALEGTGQLPKFEDDLFKLSAPVNGRDAFLIPTAEVPLTNLLAGEILPEASLPLAFVALT-PCFRAEAGS 332          
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Match: A0A7S2SGV2_9STRA (Serine--tRNA ligase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGV2_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.960e-65
Identity = 116/208 (55.77%), Postives = 148/208 (71.15%), Query Frame = 1
Query:  436 DEAKEKKVEVESINKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWGQEYIKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAIGQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKT-NHLAANEDSFLIPTGEVPLTNLLRGQILDKAQV*MLCISLAVPCPTVVGGS 1056
            +EA+  K +VE  N++A  AE +L  VD +   LL  +PNLL  + PDG GE+EN +V EWG +    GE+F+WHDE+A +L GW+PEGAAK++GARFSVL G +ARLERA+ Q+ LD HT    YTE++VP +V RS LEGTGQLPKFEDDLFK  NH A  ED+FLIPT EVPLTNL RG+ILD+ ++  L ++   PC     GS
Sbjct:    2 EEAEALKAQVEEANRIADGAEAELEAVDSQCKQLLDAMPNLLHDQTPDGKGEQENELVKEWGTDQRMIGEDFLWHDEIAERLNGWNPEGAAKLAGARFSVLSGAVARLERALVQFFLDTHTKNE-YTEMAVPYIVGRSVLEGTGQLPKFEDDLFKLENHQANAEDAFLIPTAEVPLTNLYRGEILDQGRL-PLSMTALTPCFRAEAGS 207          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14218.3133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRT5_ECTSI4.310e-18080.12Serine--tRNA ligase n=1 Tax=Ectocarpus siliculosus... [more]
A0A835YK02_9STRA1.800e-9654.90Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2UWA1_9STRA1.860e-9157.50Serine--tRNA ligase n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A7S3Z8C3_9EUKA2.130e-8555.56Serine--tRNA ligase n=1 Tax=Lotharella globosa Tax... [more]
W7TYV7_9STRA1.760e-8151.44Serine--tRNA ligase n=3 Tax=Monodopsidaceae TaxID=... [more]
A0A7S3Y0F1_HETAK1.100e-7248.11Serine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S3MC65_9STRA6.050e-6848.30Serine--tRNA ligase n=1 Tax=Spumella elongata TaxI... [more]
F0Y990_AURAN1.260e-6545.25Serine--tRNA ligase n=1 Tax=Aureococcus anophageff... [more]
A0A8J5X803_DIALT1.710e-6548.03Serine--tRNA ligase n=1 Tax=Diacronema lutheri Tax... [more]
A0A7S2SGV2_9STRA1.960e-6555.77Serine--tRNA ligase (Fragment) n=1 Tax=Rhizochromu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14218contigL-elsbetiae_contig14218:987..4689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score523.5
Seed ortholog evalue7.2e-146
Seed eggNOG ortholog2880.D8LRT5
KEGG rclassRC00055,RC00523
KEGG koko:K01875
KEGG ReactionR03662,R08218
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categorymitochondrion
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004828,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.seryl-tRNA aminoacylation
EggNOG OGsCOG0172@1,KOG2509@2759
EC6.1.1.11
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Ec32 ortholog descriptionSerine-tRNA ligase, type1
Ec32 orthologEc-08_002360.1
Exons7
Model size1312
Cds size984
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.7245028-UTR-L-elsbetiae_contig14218:986..10071622815566.7245028-UTR-L-elsbetiae_contig14218:986..1007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14218 987..1007 +
1691682963.6260345-UTR-L-elsbetiae_contig14218:986..10071691682963.6260345-UTR-L-elsbetiae_contig14218:986..1007Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14218 987..1007 +
1622815566.8446226-UTR-L-elsbetiae_contig14218:4382..46891622815566.8446226-UTR-L-elsbetiae_contig14218:4382..4689Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14218 4383..4689 +
1691682963.7152164-UTR-L-elsbetiae_contig14218:4382..46891691682963.7152164-UTR-L-elsbetiae_contig14218:4382..4689Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14218 4383..4689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.7402527-CDS-L-elsbetiae_contig14218:1007..13111622815566.7402527-CDS-L-elsbetiae_contig14218:1007..1311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 1008..1311 +
1691682963.6395755-CDS-L-elsbetiae_contig14218:1007..13111691682963.6395755-CDS-L-elsbetiae_contig14218:1007..1311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 1008..1311 +
1622815566.7540421-CDS-L-elsbetiae_contig14218:1579..16361622815566.7540421-CDS-L-elsbetiae_contig14218:1579..1636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 1580..1636 +
1691682963.650574-CDS-L-elsbetiae_contig14218:1579..16361691682963.650574-CDS-L-elsbetiae_contig14218:1579..1636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 1580..1636 +
1622815566.7678862-CDS-L-elsbetiae_contig14218:2608..26311622815566.7678862-CDS-L-elsbetiae_contig14218:2608..2631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 2609..2631 +
1691682963.6604462-CDS-L-elsbetiae_contig14218:2608..26311691682963.6604462-CDS-L-elsbetiae_contig14218:2608..2631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 2609..2631 +
1622815566.7817178-CDS-L-elsbetiae_contig14218:2737..28451622815566.7817178-CDS-L-elsbetiae_contig14218:2737..2845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 2738..2845 +
1691682963.6702015-CDS-L-elsbetiae_contig14218:2737..28451691682963.6702015-CDS-L-elsbetiae_contig14218:2737..2845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 2738..2845 +
1622815566.7984207-CDS-L-elsbetiae_contig14218:3301..34331622815566.7984207-CDS-L-elsbetiae_contig14218:3301..3433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 3302..3433 +
1691682963.6800842-CDS-L-elsbetiae_contig14218:3301..34331691682963.6800842-CDS-L-elsbetiae_contig14218:3301..3433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 3302..3433 +
1622815566.8155186-CDS-L-elsbetiae_contig14218:3672..38241622815566.8155186-CDS-L-elsbetiae_contig14218:3672..3824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 3673..3824 +
1691682963.6901171-CDS-L-elsbetiae_contig14218:3672..38241691682963.6901171-CDS-L-elsbetiae_contig14218:3672..3824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 3673..3824 +
1622815566.8326662-CDS-L-elsbetiae_contig14218:4174..43821622815566.8326662-CDS-L-elsbetiae_contig14218:4174..4382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 4175..4382 +
1691682963.7026632-CDS-L-elsbetiae_contig14218:4174..43821691682963.7026632-CDS-L-elsbetiae_contig14218:4174..4382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14218 4175..4382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14218.3133.1prot_L-elsbetiae_contig14218.3133.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14218 1008..4382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14218.3133.1

>prot_L-elsbetiae_contig14218.3133.1 ID=prot_L-elsbetiae_contig14218.3133.1|Name=mRNA_L-elsbetiae_contig14218.3133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=328bp
MITPCARIMAVATIATTRCGSFLYGGSRFARTGARGGKQFTALHLSSTQV
EHSSSSTQSRGNADDASLDSLLISSNPTLVIEHMKARRMGEDSVEAVNRI
RELVDSRREYIMTKEDALKQRDATGPLIIGKLMKAGQADEAKEKKVEVES
INKVAGSAEEDLNKVDGELNTLLMRLPNLLDSRVPDGDGEEENVVVSEWG
QEYIKRGEEFIWHDEVATKLGGWDPEGAAKISGARFSVLKGPLARLERAI
GQWLLDMHTNEHGYTEVSVPLLVTRSSLEGTGQLPKFEDDLFKTNHLAAN
EDSFLIPTGEVPLTNLLRGQILDKAQV*
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mRNA from alignment at L-elsbetiae_contig14218:987..4689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14218.3133.1 ID=mRNA_L-elsbetiae_contig14218.3133.1|Name=mRNA_L-elsbetiae_contig14218.3133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3703bp|location=Sequence derived from alignment at L-elsbetiae_contig14218:987..4689+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGTTTTACAGGCGCTGGCGATGATCACGCCTTGCGCACGGATCATGGC GGTGGCCACTATCGCAACGACTCGGTGTGGGTCTTTTCTGTATGGTGGCT CGCGATTTGCTCGAACTGGTGCACGAGGTGGAAAGCAGTTCACTGCGCTG CATCTCTCGAGCACCCAGGTTGAACACAGCAGCAGCAGCACCCAGTCGAG GGGAAACGCTGACGATGCTTCGCTGGATTCCTTGCTCATATCGTCAAATC CAACACTGGTGATAGAGCATATGAAGGCTAGGCGAATGGGCGAAGATAGC GTGGAGGCCGTAAATAGGATAAGAGGTATGCTGGCGGAACCACGCCTATC ATCAGCCTGTGTGTATATCTAGATATGAGTATGTTCTTATAGGAATAGGT TACGAGTGCACAACACAGACAACAGTAGTAGTAGTGGTGTCTGCGTAAGA ACATGGACCCGCGGGAGCTGCAATCCATTCAAGCAATGCGATGCTTCGCC GTTCAGGCGACAACCAGTGCCACGAGTTGACAGAAAACACTAATTGTCAC CGTCCCCCCTCTCTCGTTCGTTCCAAATTCGTCCATTGAGCAGAGCTCGT GGATTCTCGGCGCGAGTACATCATGACTAAGGAGGACGCCTTGAAACAGC GTAATGCCATATCAGCTCAGGCAAGATGAGAGCGGCCACCCGTGCGCAGT GCTGCCGCGGTTATGGCAAAGTATTTGCTACCCATGGTGGTGTTTTCGAG CGCGTTGTGGGGCTCTCTGGTGTCTACGGTGCATCAGCACCACGGCATGA GTATTGGCCCAAAGTGCTAGATGTTGCTACATTATTTCCGGGCCAACACC TCAGCATTCCGGCAACTTTCAAACTCCCGACTGATTGTAGGCCGATCACA TTGCCCACCACCCAATTGTAGAAACAATCTCCCTTTAAGGTAAGCCACGA TCATGTAGCGAAGGGGAAAAGGCCAAACCCCAGAAAAGGCGAAGAGGCAT GTTGTGTTTTGTGGTCTGCATCCGGCAAAAGCTGACGTATTTGGCAGTTC GTCGGTCATCGGTCAAACATAAAAAAATGGCAGTTATATGGCGGTGCAAC CGTTTTTTTGTCTCTTTCCGCTTTTACACTAAGCGCCATCGCAATTTAAA ATGAAGCACGTCCTCCTTGGCCAGTAGGTTAACATATCTATCGAGAGTGA AGGACAGCAGCTACCATCGCGTGGCCTTCGTTTCTATAGCGGTGCTGTAG AGCCTTTGCTCTCTTCCATTTTTCTTATCAAACCTTATTCGACCGCTGAA AATCTCTCGACATGGCAAACGTCACTGCCATTTCAAAACGGGGCTGCCAC CGCTGCTGAGGACGCCAGAGATTAGGCCGCATATTTACAGCCGTTCCAGG AGTGCGAAAAATGCTCCATTGTCACGCCGCCACTCGAAGCACAAGGACCT GTTTGAAACCTGCCCCCCGGCTATGTTACTCTTTTGGGATGCCCTTCGAC ATCTCTTAGCCTACTGGCCAAGGAGACGGTGCCCCATTTTTTGAAAATCG TCGGGCATTTCGACAACTTGCTGTGTTTTAAATCAAGATATAAAAATGGA TCCAGATTGTGCAGTAAAGCAGGGGACGCTACCGGGCCACTGATCGTGGC CTACCTTAACTTTGCGGTGGCAATGCTATCCTTGCATCGCCGCCCTGATG TGCCTAACCGCATACGTTGGTTCGTTGCTGTTTGGTGCGCCGGCTCTCCA GATCGGAAAGTTGATGAAGGCAGGCCAAGCCGATGAAGCAAAGGAGAAGA AGGTCGAAGTGGAGAGCATCAACAAGGTCGCTGGTTCTGCCGAAGAAGAC TTGAACAAGGTTCGGCGTTTGATGAGGATGCATCACATTCCACGGCAGTG TTGTTGTTGTTGACAGAATTGCGTAAGTCCCCCTGGAACTACTTTTTCAC AGACTGGACATAAACTGCTGACATTTGCAATATACATTAATTAAAACGAT GAGGTTGTCTTCGACTGACAAAGCATTGATTACTGCTTCTTGCATGCATA GTCAATGTAAGGTTTCTCCTTGCGATCACCCACTTGCGCTGTATGCAACC CAGTCTTCAGATAACATCGGCGCCTCTATGGCTGCCGACGCTGACGATCT AGGCGACTGGCTGTCCTGCTTTCACGGCCGGGTGAAAACCGACATACAGC CCCGGGAGCGTCACATTTGTGTGACCACGTCAAGTTTGAAAACCACTGCA GTGAACTCCTGGCCGCCATTTCTTACCGAGATGCTCCGGCTTGCTACTAC TAAACTCATCCTCAGGTGGACGGCGAGTTGAACACTTTGTTGATGCGTCT ACCGAACTTGCTGGATTCCCGGGTGCCAGATGGCGACGGGGAGGAGGAAA ATGTGGTTGTGTCTGAATGGGGGCAGGAGTACATCAAGCGAGGAGAGGTA CGTACATGGGACGAGGTGGTTTGGTTGGGCTGGTTTTTGCAACCCGTGCT AGATGTGCGTGGAACATAGGTATTTTGGCCAAGAATGAAGTGCGAAAGCA CACTGCTGTGGCGGCCTATTATATGTCACGCTTTGACCCCGTGCCCGCAT GTAGTGAAATTTCGTTTTGACTGCTGTGTTTCGAATGTCAAATTTGAGCC GCGATCAACATCGCTGAAACCGACGTTGGCACTCAGGAGTTTATCTGGCA CGACGAGGTGGCGACGAAACTCGGAGGGTGGGACCCGGAAGGAGCGGCAA AAATATCTGGCGCGAGGTTTTCCGTTTTGAAGGGACCGCTCGCGCGGTTG GAGCGTGCTATCGGCCAGTGGCTTCTTGACATGCACACGTAAGTTAGACT TTTTTTGCGGTGGGAAAGGCCCGGTGCGGTAAATATTTCAGGGCGCTTGA GGGGGGCGGCCTACACGGCCAAAAATTCGTGGAAGTTTCCCTATTTTGCA TTCAAAAGAGTGTTCGGATGTCAAATGGGAAATCGACTGATGAAGGTCTA CTCTAACCATGGTTCACCATGTATCACAAAAATGCTTCCAGGCGAAGAAC ACAATATACTAAACTGCCAAATATTTATGCGCATGCGTGGCAATGCTTAA TGCTTGCCCAATATGCTACGTTCGTGCGTCACTTCTGCTGCTATATGTAT ACTTGCTAACAAATAATCTCGTAACATTTTGGCGACAGGAATGAGCATGG GTATACAGAGGTGTCCGTCCCGCTGTTGGTAACCCGGAGCTCGTTGGAAG GGACAGGGCAGCTGCCAAAGTTCGAAGACGACCTCTTCAAAACCAATCAC TTGGCAGCAAATGAAGATAGCTTTTTGATTCCTACGGGTGAGGTGCCTTT GACCAACCTCTTACGAGGGCAGATTCTGGACAAAGCTCAGGTGTGAATGC TGTGCATCTCGCTTGCCGTACCATGCCCTACCGTGGTCGGGGGTAGCAAG GTTGTTCCGCCTTGAACGGGCGTTCCTCCAAGACACATGTGTACATTTTA TGTTGTCTACGACTTCTACTTCCTCTGTCTCATAAGTCTGGGAACTTATG CTGGGAGAGACCGTTAACGGTCTCGGAAGAGTCTTCGGCGATAACTTTTT CGAAATCTTGAGCGTTTTTTGGGTTGAAACACATTTTTTTTTTCTCATTG CGCACTACCTTGCATGGGCTAGCGGGTAACAAAAAAGTAGTCAGGCCGAA AAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14218:987..4689+

>mRNA_L-elsbetiae_contig14218.3133.1 ID=mRNA_L-elsbetiae_contig14218.3133.1|Name=mRNA_L-elsbetiae_contig14218.3133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1968bp|location=Sequence derived from alignment at L-elsbetiae_contig14218:987..4689+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCACGCCTTGCGCACGGATCATGGCGGTGGCCACTATCGCAACGAC
TCGGTGTGGGTCTTTTCTGTATGGTGGCTCGCGATTTGCTCGAACTGGTG
CACGAGGTGGAAAGCAGTTCACTGCGCTGCATCTCTCGAGCACCCAGGTT
GAACACAGCAGCAGCAGCACCCAGTCGAGGGGAAACGCTGACGATGCTTC
GCTGGATTCCTTGCTCATATCGTCAAATCCAACACTGGTGATAGAGCATA
TGAAGGCTAGGCGAATGGGCGAAGATAGCGTGGAGGCCGTAAATAGGATA
AGAGATGATCACGCCTTGCGCACGGATCATGGCGGTGGCCACTATCGCAA
CGACTCGGTGTGGGTCTTTTCTGTATGGTGGCTCGCGATTTGCTCGAACT
GGTGCACGAGGTGGAAAGCAGTTCACTGCGCTGCATCTCTCGAGCACCCA
GGTTGAACACAGCAGCAGCAGCACCCAGTCGAGGGGAAACGCTGACGATG
CTTCGCTGGATTCCTTGCTCATATCGTCAAATCCAACACTGGTGATAGAG
CATATGAAGGCTAGGCGAATGGGCGAAGATAGCGTGGAGGCCGTAAATAG
GATAAGAGAGCTCGTGGATTCTCGGCGCGAGTACATCATGACTAAGGAGG
ACGCCTTGAAACAGCAGCTCGTGGATTCTCGGCGCGAGTACATCATGACT
AAGGAGGACGCCTTGAAACAGCGGGACGCTACCGGGCCACTGATCGGGAC
GCTACCGGGCCACTGATCATCGGAAAGTTGATGAAGGCAGGCCAAGCCGA
TGAAGCAAAGGAGAAGAAGGTCGAAGTGGAGAGCATCAACAAGGTCGCTG
GTTCTGCCGAAGAAGACTTGAACAAGATCGGAAAGTTGATGAAGGCAGGC
CAAGCCGATGAAGCAAAGGAGAAGAAGGTCGAAGTGGAGAGCATCAACAA
GGTCGCTGGTTCTGCCGAAGAAGACTTGAACAAGGTGGACGGCGAGTTGA
ACACTTTGTTGATGCGTCTACCGAACTTGCTGGATTCCCGGGTGCCAGAT
GGCGACGGGGAGGAGGAAAATGTGGTTGTGTCTGAATGGGGGCAGGAGTA
CATCAAGCGAGGAGAGGTGGACGGCGAGTTGAACACTTTGTTGATGCGTC
TACCGAACTTGCTGGATTCCCGGGTGCCAGATGGCGACGGGGAGGAGGAA
AATGTGGTTGTGTCTGAATGGGGGCAGGAGTACATCAAGCGAGGAGAGGA
GTTTATCTGGCACGACGAGGTGGCGACGAAACTCGGAGGGTGGGACCCGG
AAGGAGCGGCAAAAATATCTGGCGCGAGGTTTTCCGTTTTGAAGGGACCG
CTCGCGCGGTTGGAGCGTGCTATCGGCCAGTGGCTTCTTGACATGCACAC
GAGTTTATCTGGCACGACGAGGTGGCGACGAAACTCGGAGGGTGGGACCC
GGAAGGAGCGGCAAAAATATCTGGCGCGAGGTTTTCCGTTTTGAAGGGAC
CGCTCGCGCGGTTGGAGCGTGCTATCGGCCAGTGGCTTCTTGACATGCAC
ACGAATGAGCATGGGTATACAGAGGTGTCCGTCCCGCTGTTGGTAACCCG
GAGCTCGTTGGAAGGGACAGGGCAGCTGCCAAAGTTCGAAGACGACCTCT
TCAAAACCAATCACTTGGCAGCAAATGAAGATAGCTTTTTGATTCCTACG
GGTGAGGTGCCTTTGACCAACCTCTTACGAGGGCAGATTCTGGACAAAGC
TCAGGTGTGAGAATGAGCATGGGTATACAGAGGTGTCCGTCCCGCTGTTG
GTAACCCGGAGCTCGTTGGAAGGGACAGGGCAGCTGCCAAAGTTCGAAGA
CGACCTCTTCAAAACCAATCACTTGGCAGCAAATGAAGATAGCTTTTTGA
TTCCTACGGGTGAGGTGCCTTTGACCAACCTCTTACGAGGGCAGATTCTG
GACAAAGCTCAGGTGTGA
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