mRNA_L-elsbetiae_contig1407.3037.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1407.3037.1
Unique NamemRNA_L-elsbetiae_contig1407.3037.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1407.3037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1407contigL-elsbetiae_contig1407:17664..19221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size906
Cds size543
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1407.3037.1prot_L-elsbetiae_contig1407.3037.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1407 17664..18860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.4207704-CDS-L-elsbetiae_contig1407:17663..177211622815557.4207704-CDS-L-elsbetiae_contig1407:17663..17721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 17664..17721 +
1691682958.2223792-CDS-L-elsbetiae_contig1407:17663..177211691682958.2223792-CDS-L-elsbetiae_contig1407:17663..17721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 17664..17721 +
1622815557.4318194-CDS-L-elsbetiae_contig1407:18375..188601622815557.4318194-CDS-L-elsbetiae_contig1407:18375..18860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 18376..18860 +
1691682958.231317-CDS-L-elsbetiae_contig1407:18375..188601691682958.231317-CDS-L-elsbetiae_contig1407:18375..18860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 18376..18860 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.4424126-UTR-L-elsbetiae_contig1407:18860..192211622815557.4424126-UTR-L-elsbetiae_contig1407:18860..19221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 18861..19221 +
1691682958.239601-UTR-L-elsbetiae_contig1407:18860..192211691682958.239601-UTR-L-elsbetiae_contig1407:18860..19221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 18861..19221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1407.3037.1

>prot_L-elsbetiae_contig1407.3037.1 ID=prot_L-elsbetiae_contig1407.3037.1|Name=mRNA_L-elsbetiae_contig1407.3037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
TPSHSPPGRCWYPTFRRKQGVNNGIWKFDRRRKSEPRGRGKQLCGRSCPE
TQVPLEQRGIGGQLVGVHTLGRRIGRFIGRIGRRIGRDRDQGGWRWSRER
GPRSCQERQRGRPEGVYSVRQSQQHPARPRRRRQDAVQGAEGTRGAQGGV
FSRQETQEEYGRSCTGTAPYISRFFLNGHP*
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mRNA from alignment at L-elsbetiae_contig1407:17664..19221+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1407.3037.1 ID=mRNA_L-elsbetiae_contig1407.3037.1|Name=mRNA_L-elsbetiae_contig1407.3037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1558bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:17664..19221+ (Laminarionema elsbetiae ELsaHSoW15)
ACTCCCTCACACTCTCCGCCTGGTAGATGCTGGTACCCGACATTCCGAAG
GAAACAGGTGAGAATTTATACTTTCTCCAAACTATCGACCACACTCTGTA
GGCGCCTACACAACACGCGTGCCTCGTCGATTAGAGCACTCTTTGTACAG
CCCGGTCCCTCCGAATCCTCAGAAATATCGGAGGTCTCTGAATCGCACGG
CGTAGCGCACCCATCGACACTAGGCGGAAGGGTACAGTGGCTAGACAACG
AACTCGCCCGGCTCGAAATACTTCTACTGGGGTCGCCCTTGGCTTTGCTT
TTCCCCTTCTTGCTGCCACCACTGTCCTTCTTCACACGTTTGCCCCTTGG
CTTGTCCTTTGCCTTACCCTTCGGCTTGCATTCGACACTATCGTCGGAGT
GTATGTCAGCGGGGCTGTCGCACGATTCGATTCGCTTGAGATGTATAAGC
GCTCCTTTGGAATTTAGGAGCTTTTTCATTATGCGGACCTCGTCGTGAGA
CAGGTTGGCGTACTGGTATCTACACTCAACGTTGGAGTCATCGTCGAAAG
GCCGGCTTTTACTGTCAAAGCGCTTTTTGAACATCTTGAGCAGCTTCTCA
ACTGACTTGTCGATCGCCGAAGCCTTGGTGAAATTGGCGTCGCAGATTAC
ACGAATTGTTGACATGCCTGTTGCTGACTCAACCTGTTAACTCAACAACC
ACATTTTTTTCCGTGTTAACAATGGCATCTGGAAATTCGACCGGCGGAGG
AAATCTGAACCCAGAGGGCGCGGAAAACAACTCTGTGGCAGGAGCTGCCC
AGAAACCCAAGTACCCCTCGAGCAGCGAGGGATCGGTGGACAGCTCGTCG
GAGTTCATACCCTCGGGCGGAGAATCGGGCGATTCATCGGACGAATCGGG
AGACGAATCGGGCGAGACCGAGACCAAGGGGGGTGGAGGTGGAGCCGGGA
GCGAGGTCCCCGATCATGTCAAGAACGGCAACGAGGTCGCCCGGAGGGTG
TATATTCGGTACGCCAAAGCCAACAACATCCAGCTCGGCCCCGTCGGCGA
CGCCAAGACGCCGTCCAGGGGGCGGAGGGGACCCGGGGCGCGCAAGGCGG
AGTGTTCTCCCGCCAAGAAACTCAGGAAGAGTACGGGCGGAGCTGCACGG
GCACCGCTCCCTATATTTCGCGGTTTTTCTTAAACGGACACCCGTAGGAC
AAAGAACAGTAAACGAAACCCGTAGCTCTTGGTGATAAACCTTTTATGTT
GCTGGATGTAGTCATTATTTTGTATCGCAAGTGCAACGGTAAATATGTCG
GCAGAAAGAACCATCCCTCACCCGTCTATTAGCCTGGAACATTTGTCAGT
GGTAGCGTGTGGGAGTAGTATACATAACGACAAGAATCAGGTCGGTCTAG
GTAGTACACAGAGTAATTCTACCTTTGTGTACGACGCACCGGGGCAAACT
ACGACGGAAGTAGGCAGAAACGATGTTGTATTGGACCCCTCGGGGGACAG
CGCCAGCGTGACACTAGGTACACTTGTCACCGCCGGCGGGGGCCAGAGCA
TGAAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1407:17664..19221+

>mRNA_L-elsbetiae_contig1407.3037.1 ID=mRNA_L-elsbetiae_contig1407.3037.1|Name=mRNA_L-elsbetiae_contig1407.3037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:17664..19221+ (Laminarionema elsbetiae ELsaHSoW15)
ACTCCCTCACACTCTCCGCCTGGTAGATGCTGGTACCCGACATTCCGAAG
GAAACAGGACTCCCTCACACTCTCCGCCTGGTAGATGCTGGTACCCGACA
TTCCGAAGGAAACAGGGTGTTAACAATGGCATCTGGAAATTCGACCGGCG
GAGGAAATCTGAACCCAGAGGGCGCGGAAAACAACTCTGTGGCAGGAGCT
GCCCAGAAACCCAAGTACCCCTCGAGCAGCGAGGGATCGGTGGACAGCTC
GTCGGAGTTCATACCCTCGGGCGGAGAATCGGGCGATTCATCGGACGAAT
CGGGAGACGAATCGGGCGAGACCGAGACCAAGGGGGGTGGAGGTGGAGCC
GGGAGCGAGGTCCCCGATCATGTCAAGAACGGCAACGAGGTCGCCCGGAG
GGTGTATATTCGGTACGCCAAAGCCAACAACATCCAGCTCGGCCCCGTCG
GCGACGCCAAGACGCCGTCCAGGGGGCGGAGGGGACCCGGGGCGCGCAAG
GCGGAGTGTTCTCCCGCCAAGAAACTCAGGAAGAGTACGGGCGGAGCTGC
ACGGGCACCGCTCCCTATATTTCGCGGTTTTTCTTAAACGGACACCCGTA
GGTGTTAACAATGGCATCTGGAAATTCGACCGGCGGAGGAAATCTGAACC
CAGAGGGCGCGGAAAACAACTCTGTGGCAGGAGCTGCCCAGAAACCCAAG
TACCCCTCGAGCAGCGAGGGATCGGTGGACAGCTCGTCGGAGTTCATACC
CTCGGGCGGAGAATCGGGCGATTCATCGGACGAATCGGGAGACGAATCGG
GCGAGACCGAGACCAAGGGGGGTGGAGGTGGAGCCGGGAGCGAGGTCCCC
GATCATGTCAAGAACGGCAACGAGGTCGCCCGGAGGGTGTATATTCGGTA
CGCCAAAGCCAACAACATCCAGCTCGGCCCCGTCGGCGACGCCAAGACGC
CGTCCAGGGGGCGGAGGGGACCCGGGGCGCGCAAGGCGGAGTGTTCTCCC
GCCAAGAAACTCAGGAAGAGTACGGGCGGAGCTGCACGGGCACCGCTCCC
TATATTTCGCGGTTTTTCTTAAACGGACACCCGTAG
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