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Homology
BLAST of mRNA_L-elsbetiae_contig14066.3032.1 vs. uniprot
Match: A0A6H5KT26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT26_9PHAE) HSP 1 Score: 179 bits (453), Expect = 3.580e-45 Identity = 121/243 (49.79%), Postives = 141/243 (58.02%), Query Frame = 3
Query: 39 GQGTLGEKVVARALECLEGLCGSEECERFMTPLAREVALASLPCLSAAGPEPIRSRAEALFRRLSFLDGDGVWLLLMQTLDNASQQPNPPQR--------------------ASLGXXXXXXXXXXXRSRAGKRVAAPGVVAAATPRGAGPRSLAVGNREXXXXXXXXXXXXXXXLPKVLPPVPSVPEGTASVVGVGGGRPAALLESRAVFSGSAGRVAGECAPAAARLLGVLGAGGAVAEHM 707
G+ T+GEKVVAR LE LE LC S++CERFMTPLAREVA+A+LPCLS+AG I SRAEALFRRL+FLDGDGVWLLLMQT+D A+QQ P Q AS+ R +G VA+P VAA AG S G+ LP +V ++V G RPAALLE R+VFSG AGRVA ECAPAA+RLLG+LG G V EHM
Sbjct: 1518 GRDTMGEKVVARTLESLERLCSSQQCERFMTPLAREVAIAALPCLSSAGATSILSRAEALFRRLAFLDGDGVWLLLMQTMDTATQQRCPQQXXXXXXXXYSRRNHHQHLQHCASVDGQRGDVTSDGGRGASGW-VASPPTVAARLRSDAGGSSAGTGDAGCSSSQGGSGDGTSSRLPGCPTLEDTVLSELSAVGATTGRRPAALLERRSVFSGGAGRVAVECAPAASRLLGMLGDHGGVVEHM 1759
BLAST of mRNA_L-elsbetiae_contig14066.3032.1 vs. uniprot
Match: A0A835Z555_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z555_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.770e-10 Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 3
Query: 60 KVVARALECLEGLCGSEECERFMTPLAREVALASLPCLSAAGPEPIRSRAEALFRRLSFLDGDGVWLLLMQTLDNA----SQQPNPP 308
KV LECL L + +C R+M PLA++VA +LP LSA P +R+ LFR L LDGDG+W++L+Q S P PP
Sbjct: 1151 KVAVALLECLTALARTRDCRRYMAPLAQDVAAVTLPGLSARAPVTLRAATIELFRALMALDGDGLWVILLQHCRGEGPVESMAPPPP 1237
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Exons | 2 |
Model size | 1324 |
Cds size | 585 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815557.2873712-UTR-L-elsbetiae_contig14066:1767..1892 | 1622815557.2873712-UTR-L-elsbetiae_contig14066:1767..1892 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14066 1768..1892 + |
1691682958.1408582-UTR-L-elsbetiae_contig14066:1767..1892 | 1691682958.1408582-UTR-L-elsbetiae_contig14066:1767..1892 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14066 1768..1892 + |
1622815557.3244324-UTR-L-elsbetiae_contig14066:3534..4148 | 1622815557.3244324-UTR-L-elsbetiae_contig14066:3534..4148 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14066 3535..4148 + |
1691682958.1702394-UTR-L-elsbetiae_contig14066:3534..4148 | 1691682958.1702394-UTR-L-elsbetiae_contig14066:3534..4148 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14066 3535..4148 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815557.2993212-CDS-L-elsbetiae_contig14066:1892..1913 | 1622815557.2993212-CDS-L-elsbetiae_contig14066:1892..1913 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14066 1893..1913 + |
1691682958.1492407-CDS-L-elsbetiae_contig14066:1892..1913 | 1691682958.1492407-CDS-L-elsbetiae_contig14066:1892..1913 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14066 1893..1913 + |
1622815557.3128836-CDS-L-elsbetiae_contig14066:2970..3534 | 1622815557.3128836-CDS-L-elsbetiae_contig14066:2970..3534 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14066 2971..3534 + |
1691682958.157466-CDS-L-elsbetiae_contig14066:2970..3534 | 1691682958.157466-CDS-L-elsbetiae_contig14066:2970..3534 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14066 2971..3534 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig14066.3032.1 >prot_L-elsbetiae_contig14066.3032.1 ID=prot_L-elsbetiae_contig14066.3032.1|Name=mRNA_L-elsbetiae_contig14066.3032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MTPLAREVALASLPCLSAAGPEPIRSRAEALFRRLSFLDGDGVWLLLMQT LDNASQQPNPPQRASLGGGGAPATAGGGRSRAGKRVAAPGVVAAATPRGA GPRSLAVGNREESSSGGVGGSGAWWWLPKVLPPVPSVPEGTASVVGVGGG RPAALLESRAVFSGSAGRVAGECAPAAARLLGVLGAGGAVAEHM* back to topmRNA from alignment at L-elsbetiae_contig14066:1768..4148+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig14066.3032.1 ID=mRNA_L-elsbetiae_contig14066.3032.1|Name=mRNA_L-elsbetiae_contig14066.3032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2381bp|location=Sequence derived from alignment at L-elsbetiae_contig14066:1768..4148+ (Laminarionema elsbetiae ELsaHSoW15) CGGGCGGCGGTGGTCGCGGGGGCTGGAGAGGCGGCGGAGGACAGGGCACC
TTGGGCGAGAAGGTGGTCGCCCGGGCGCTGGAGTGCCTGGAAGGGCTGTG
CGGCAGCGAGGAGTGCGAGCGCTTCATGACACCGCTAGCTCGGGAGGTAA
AATGAGCCTTCCCCTTTTTCGGAGCAGTGCACCAGTTGCACCTGCGTCCC
TCTCGGCAATGCCTCGGCGAAAAGTAGGCAGGACAGGCTCGTTGTTGTTG
TTGTTGTTGGTTGTTGTTGTTGTTTTCTTCACATTCAATTCAAAAGCGTT
CCGATGTCTCTACCCAATACCTCCGTCCGTCCGTACCAATCAAACACTCG
ACACGGTCGATTCCTGTGGTCACAGGCTAACTTACCCTAAGAAAGGGTAT
ATTACTATACTGAAAAATAAAAGGTGGACCCGAAAGGTCAGCAAAGCATA
AAAACAAAAGAACCGACAAAGATAGTCTGGAGACAGCCTTGCGATCAGGC
AAAAGGGGGTCTTTGAACCCTCCAAGGCGAAGAGAAAGGCGTACATATCA
CACACATGTAGCACCGGTGCCCCGTTACATACACTGGCCTGTTTGTTTCT
GCTCGGCGGCTCAGCGAAGGTTCCCCCCCGGGGGCGCTTGTTCACGACAG
CGCCCCGGGGCTCTGCGCCAGTAACTTGGCGCCTTCCACGCGGGCGCATC
CCGCGCCCGACGTCCTCTGCGCGAACCTCACAGCGCTGAGCCATCCCATG
CTGCGATATTTCCGGGCTTGTCGGTGCGCCTTATTGTAGGGAATCCATTG
AACAGTCTGGACACATTAGCGATGTCGGAGATTAGTTGTGCCTCTTCGGT
CTGTTGGTATACCTTTCACTCCTGCGTGTGTTTCTTTGGAATATTTTCTG
AGGGTGGCCCCAACGCTTTTGTGACAACAAGCCGTGAGTTGCTGGATTTT
TCGTGATTAGCAATCTCGATTATACGAGCTAATGTGAAGGAAACACAATA
ACAACAACAACAAACAAACAAACAACAACAAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACACATGCCCCCACAACAGTTTTT
CCCGTCTGTGTTGGCTGTGAGCCGCATTGCACGTATATTTATGTCTTTTT
AGCATTGTCTGGTGTTTCCACTTCCGCATTTTTTTGTCGTTTTTGTTGCT
CAGGTTGCCCTGGCATCGCTCCCGTGCCTTTCCGCCGCGGGCCCGGAGCC
CATCCGCTCCCGAGCCGAGGCGCTATTTCGGCGGCTTTCCTTCCTCGACG
GCGACGGCGTGTGGCTCTTGCTCATGCAGACCTTGGACAACGCCTCCCAG
CAACCAAACCCGCCGCAGCGCGCCTCCCTTGGCGGTGGAGGGGCACCCGC
AACTGCAGGGGGGGGGCGCAGCCGCGCGGGAAAACGGGTGGCAGCACCAG
GGGTAGTAGCGGCGGCGACACCGCGAGGGGCGGGGCCTAGGAGCTTGGCT
GTGGGGAACAGAGAGGAGAGTAGTAGCGGCGGCGTCGGCGGTTCGGGCGC
TTGGTGGTGGCTACCAAAGGTACTGCCACCTGTCCCTTCAGTTCCGGAGG
GCACGGCGTCAGTGGTTGGCGTTGGCGGCGGAAGGCCTGCCGCTTTGCTT
GAGAGTCGGGCGGTGTTCAGCGGGAGCGCGGGGCGCGTTGCCGGAGAGTG
CGCCCCTGCGGCGGCCAGGCTGCTGGGCGTGCTGGGCGCCGGCGGCGCGG
TGGCTGAGCACATGTAGAAGGAGAGTAACCGGGTGCTTTTGACAAATATC
TACTGAGCGCAAGCGGTCTATCTACATCCAAACGTCCAGCCTGTTAGAAG
GTCGTTCCAAGGGGACTGTTGTTAGACACACTACAGCATGTGGTATTTGG
TTTGCTTCTTCGAACTTTCTTTTATTTTCTCTTCCGAAATATGTATACCT
TTGATTTTGTGCTGGCGAGACGCAAGACCCCCCGGGGTCCAGTTTAGTAC
CACCGGGCGCGTATGCACCATATTTTTGCTTTATTTTTCTTCCGCCGCGT
CGAGTGTGCCTTGTTTTGTGACCACGGGCCCCCAAGGTTGTTTTGGACTA
GAGAGCTAATGTGAGAAACAACAATAACAACAACAGCCCTCCCTCACCGC
CCTGAGGATTGGCACAAAATCGAGTGTTTTTGCGGTTTTGTGCTTCCACA
AGCAACCAAAACCGGAGATGCACTCTTGCGCGTGTCTGCGTACACGCGTG
TTATCTATCTAGTCTAGATGCGCAGGGAGTTCAGTAAACAGACGGGCGTA
CATGCATACATAGGTGCGGCGGTGTGCAGTACGTGCGTGCGTGTGGTGCG
TAGACTCCCAGTTTAAAAAAAGACAGAGTGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig14066:1768..4148+ >mRNA_L-elsbetiae_contig14066.3032.1 ID=mRNA_L-elsbetiae_contig14066.3032.1|Name=mRNA_L-elsbetiae_contig14066.3032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig14066:1768..4148+ (Laminarionema elsbetiae ELsaHSoW15) ATGACACCGCTAGCTCGGGAGATGACACCGCTAGCTCGGGAGGTTGCCCT GGCATCGCTCCCGTGCCTTTCCGCCGCGGGCCCGGAGCCCATCCGCTCCC GAGCCGAGGCGCTATTTCGGCGGCTTTCCTTCCTCGACGGCGACGGCGTG TGGCTCTTGCTCATGCAGACCTTGGACAACGCCTCCCAGCAACCAAACCC GCCGCAGCGCGCCTCCCTTGGCGGTGGAGGGGCACCCGCAACTGCAGGGG GGGGGCGCAGCCGCGCGGGAAAACGGGTGGCAGCACCAGGGGTAGTAGCG GCGGCGACACCGCGAGGGGCGGGGCCTAGGAGCTTGGCTGTGGGGAACAG AGAGGAGAGTAGTAGCGGCGGCGTCGGCGGTTCGGGCGCTTGGTGGTGGC TACCAAAGGTACTGCCACCTGTCCCTTCAGTTCCGGAGGGCACGGCGTCA GTGGTTGGCGTTGGCGGCGGAAGGCCTGCCGCTTTGCTTGAGAGTCGGGC GGTGTTCAGCGGGAGCGCGGGGCGCGTTGCCGGAGAGTGCGCCCCTGCGG CGGCCAGGCTGCTGGGCGTGCTGGGCGCCGGCGGCGCGGTGGCTGAGCAC ATGTAGGTTGCCCTGGCATCGCTCCCGTGCCTTTCCGCCGCGGGCCCGGA GCCCATCCGCTCCCGAGCCGAGGCGCTATTTCGGCGGCTTTCCTTCCTCG ACGGCGACGGCGTGTGGCTCTTGCTCATGCAGACCTTGGACAACGCCTCC CAGCAACCAAACCCGCCGCAGCGCGCCTCCCTTGGCGGTGGAGGGGCACC CGCAACTGCAGGGGGGGGGCGCAGCCGCGCGGGAAAACGGGTGGCAGCAC CAGGGGTAGTAGCGGCGGCGACACCGCGAGGGGCGGGGCCTAGGAGCTTG GCTGTGGGGAACAGAGAGGAGAGTAGTAGCGGCGGCGTCGGCGGTTCGGG CGCTTGGTGGTGGCTACCAAAGGTACTGCCACCTGTCCCTTCAGTTCCGG AGGGCACGGCGTCAGTGGTTGGCGTTGGCGGCGGAAGGCCTGCCGCTTTG CTTGAGAGTCGGGCGGTGTTCAGCGGGAGCGCGGGGCGCGTTGCCGGAGA GTGCGCCCCTGCGGCGGCCAGGCTGCTGGGCGTGCTGGGCGCCGGCGGCG CGGTGGCTGAGCACATGTAG back to top
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