mRNA_L-elsbetiae_contig14066.3032.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14066.3032.1
Unique NamemRNA_L-elsbetiae_contig14066.3032.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14066.3032.1 vs. uniprot
Match: A0A6H5KT26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT26_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.580e-45
Identity = 121/243 (49.79%), Postives = 141/243 (58.02%), Query Frame = 3 
Query:   39 GQGTLGEKVVARALECLEGLCGSEECERFMTPLAREVALASLPCLSAAGPEPIRSRAEALFRRLSFLDGDGVWLLLMQTLDNASQQPNPPQR--------------------ASLGXXXXXXXXXXXRSRAGKRVAAPGVVAAATPRGAGPRSLAVGNREXXXXXXXXXXXXXXXLPKVLPPVPSVPEGTASVVGVGGGRPAALLESRAVFSGSAGRVAGECAPAAARLLGVLGAGGAVAEHM 707
            G+ T+GEKVVAR LE LE LC S++CERFMTPLAREVA+A+LPCLS+AG   I SRAEALFRRL+FLDGDGVWLLLMQT+D A+QQ  P Q                     AS+            R  +G  VA+P  VAA     AG  S   G+                 LP       +V    ++V    G RPAALLE R+VFSG AGRVA ECAPAA+RLLG+LG  G V EHM
Sbjct: 1518 GRDTMGEKVVARTLESLERLCSSQQCERFMTPLAREVAIAALPCLSSAGATSILSRAEALFRRLAFLDGDGVWLLLMQTMDTATQQRCPQQXXXXXXXXYSRRNHHQHLQHCASVDGQRGDVTSDGGRGASGW-VASPPTVAARLRSDAGGSSAGTGDAGCSSSQGGSGDGTSSRLPGCPTLEDTVLSELSAVGATTGRRPAALLERRSVFSGGAGRVAVECAPAASRLLGMLGDHGGVVEHM 1759
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BLAST of mRNA_L-elsbetiae_contig14066.3032.1 vs. uniprot
Match: A0A835Z555_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z555_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.770e-10
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 3 
Query:   60 KVVARALECLEGLCGSEECERFMTPLAREVALASLPCLSAAGPEPIRSRAEALFRRLSFLDGDGVWLLLMQTLDNA----SQQPNPP 308
            KV    LECL  L  + +C R+M PLA++VA  +LP LSA  P  +R+    LFR L  LDGDG+W++L+Q         S  P PP
Sbjct: 1151 KVAVALLECLTALARTRDCRRYMAPLAQDVAAVTLPGLSARAPVTLRAATIELFRALMALDGDGLWVILLQHCRGEGPVESMAPPPP 1237
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14066.3032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT26_9PHAE3.580e-4549.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z555_9STRA3.770e-1043.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14066contigL-elsbetiae_contig14066:1768..4148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1324
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14066.3032.1prot_L-elsbetiae_contig14066.3032.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14066 1893..3534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.2873712-UTR-L-elsbetiae_contig14066:1767..18921622815557.2873712-UTR-L-elsbetiae_contig14066:1767..1892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14066 1768..1892 +
1691682958.1408582-UTR-L-elsbetiae_contig14066:1767..18921691682958.1408582-UTR-L-elsbetiae_contig14066:1767..1892Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14066 1768..1892 +
1622815557.3244324-UTR-L-elsbetiae_contig14066:3534..41481622815557.3244324-UTR-L-elsbetiae_contig14066:3534..4148Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14066 3535..4148 +
1691682958.1702394-UTR-L-elsbetiae_contig14066:3534..41481691682958.1702394-UTR-L-elsbetiae_contig14066:3534..4148Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14066 3535..4148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.2993212-CDS-L-elsbetiae_contig14066:1892..19131622815557.2993212-CDS-L-elsbetiae_contig14066:1892..1913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14066 1893..1913 +
1691682958.1492407-CDS-L-elsbetiae_contig14066:1892..19131691682958.1492407-CDS-L-elsbetiae_contig14066:1892..1913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14066 1893..1913 +
1622815557.3128836-CDS-L-elsbetiae_contig14066:2970..35341622815557.3128836-CDS-L-elsbetiae_contig14066:2970..3534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14066 2971..3534 +
1691682958.157466-CDS-L-elsbetiae_contig14066:2970..35341691682958.157466-CDS-L-elsbetiae_contig14066:2970..3534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14066 2971..3534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14066.3032.1

>prot_L-elsbetiae_contig14066.3032.1 ID=prot_L-elsbetiae_contig14066.3032.1|Name=mRNA_L-elsbetiae_contig14066.3032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
MTPLAREVALASLPCLSAAGPEPIRSRAEALFRRLSFLDGDGVWLLLMQT
LDNASQQPNPPQRASLGGGGAPATAGGGRSRAGKRVAAPGVVAAATPRGA
GPRSLAVGNREESSSGGVGGSGAWWWLPKVLPPVPSVPEGTASVVGVGGG
RPAALLESRAVFSGSAGRVAGECAPAAARLLGVLGAGGAVAEHM*
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mRNA from alignment at L-elsbetiae_contig14066:1768..4148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14066.3032.1 ID=mRNA_L-elsbetiae_contig14066.3032.1|Name=mRNA_L-elsbetiae_contig14066.3032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2381bp|location=Sequence derived from alignment at L-elsbetiae_contig14066:1768..4148+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCGGCGGTGGTCGCGGGGGCTGGAGAGGCGGCGGAGGACAGGGCACC
TTGGGCGAGAAGGTGGTCGCCCGGGCGCTGGAGTGCCTGGAAGGGCTGTG
CGGCAGCGAGGAGTGCGAGCGCTTCATGACACCGCTAGCTCGGGAGGTAA
AATGAGCCTTCCCCTTTTTCGGAGCAGTGCACCAGTTGCACCTGCGTCCC
TCTCGGCAATGCCTCGGCGAAAAGTAGGCAGGACAGGCTCGTTGTTGTTG
TTGTTGTTGGTTGTTGTTGTTGTTTTCTTCACATTCAATTCAAAAGCGTT
CCGATGTCTCTACCCAATACCTCCGTCCGTCCGTACCAATCAAACACTCG
ACACGGTCGATTCCTGTGGTCACAGGCTAACTTACCCTAAGAAAGGGTAT
ATTACTATACTGAAAAATAAAAGGTGGACCCGAAAGGTCAGCAAAGCATA
AAAACAAAAGAACCGACAAAGATAGTCTGGAGACAGCCTTGCGATCAGGC
AAAAGGGGGTCTTTGAACCCTCCAAGGCGAAGAGAAAGGCGTACATATCA
CACACATGTAGCACCGGTGCCCCGTTACATACACTGGCCTGTTTGTTTCT
GCTCGGCGGCTCAGCGAAGGTTCCCCCCCGGGGGCGCTTGTTCACGACAG
CGCCCCGGGGCTCTGCGCCAGTAACTTGGCGCCTTCCACGCGGGCGCATC
CCGCGCCCGACGTCCTCTGCGCGAACCTCACAGCGCTGAGCCATCCCATG
CTGCGATATTTCCGGGCTTGTCGGTGCGCCTTATTGTAGGGAATCCATTG
AACAGTCTGGACACATTAGCGATGTCGGAGATTAGTTGTGCCTCTTCGGT
CTGTTGGTATACCTTTCACTCCTGCGTGTGTTTCTTTGGAATATTTTCTG
AGGGTGGCCCCAACGCTTTTGTGACAACAAGCCGTGAGTTGCTGGATTTT
TCGTGATTAGCAATCTCGATTATACGAGCTAATGTGAAGGAAACACAATA
ACAACAACAACAAACAAACAAACAACAACAAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACACATGCCCCCACAACAGTTTTT
CCCGTCTGTGTTGGCTGTGAGCCGCATTGCACGTATATTTATGTCTTTTT
AGCATTGTCTGGTGTTTCCACTTCCGCATTTTTTTGTCGTTTTTGTTGCT
CAGGTTGCCCTGGCATCGCTCCCGTGCCTTTCCGCCGCGGGCCCGGAGCC
CATCCGCTCCCGAGCCGAGGCGCTATTTCGGCGGCTTTCCTTCCTCGACG
GCGACGGCGTGTGGCTCTTGCTCATGCAGACCTTGGACAACGCCTCCCAG
CAACCAAACCCGCCGCAGCGCGCCTCCCTTGGCGGTGGAGGGGCACCCGC
AACTGCAGGGGGGGGGCGCAGCCGCGCGGGAAAACGGGTGGCAGCACCAG
GGGTAGTAGCGGCGGCGACACCGCGAGGGGCGGGGCCTAGGAGCTTGGCT
GTGGGGAACAGAGAGGAGAGTAGTAGCGGCGGCGTCGGCGGTTCGGGCGC
TTGGTGGTGGCTACCAAAGGTACTGCCACCTGTCCCTTCAGTTCCGGAGG
GCACGGCGTCAGTGGTTGGCGTTGGCGGCGGAAGGCCTGCCGCTTTGCTT
GAGAGTCGGGCGGTGTTCAGCGGGAGCGCGGGGCGCGTTGCCGGAGAGTG
CGCCCCTGCGGCGGCCAGGCTGCTGGGCGTGCTGGGCGCCGGCGGCGCGG
TGGCTGAGCACATGTAGAAGGAGAGTAACCGGGTGCTTTTGACAAATATC
TACTGAGCGCAAGCGGTCTATCTACATCCAAACGTCCAGCCTGTTAGAAG
GTCGTTCCAAGGGGACTGTTGTTAGACACACTACAGCATGTGGTATTTGG
TTTGCTTCTTCGAACTTTCTTTTATTTTCTCTTCCGAAATATGTATACCT
TTGATTTTGTGCTGGCGAGACGCAAGACCCCCCGGGGTCCAGTTTAGTAC
CACCGGGCGCGTATGCACCATATTTTTGCTTTATTTTTCTTCCGCCGCGT
CGAGTGTGCCTTGTTTTGTGACCACGGGCCCCCAAGGTTGTTTTGGACTA
GAGAGCTAATGTGAGAAACAACAATAACAACAACAGCCCTCCCTCACCGC
CCTGAGGATTGGCACAAAATCGAGTGTTTTTGCGGTTTTGTGCTTCCACA
AGCAACCAAAACCGGAGATGCACTCTTGCGCGTGTCTGCGTACACGCGTG
TTATCTATCTAGTCTAGATGCGCAGGGAGTTCAGTAAACAGACGGGCGTA
CATGCATACATAGGTGCGGCGGTGTGCAGTACGTGCGTGCGTGTGGTGCG
TAGACTCCCAGTTTAAAAAAAGACAGAGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14066:1768..4148+

>mRNA_L-elsbetiae_contig14066.3032.1 ID=mRNA_L-elsbetiae_contig14066.3032.1|Name=mRNA_L-elsbetiae_contig14066.3032.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig14066:1768..4148+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACACCGCTAGCTCGGGAGATGACACCGCTAGCTCGGGAGGTTGCCCT
GGCATCGCTCCCGTGCCTTTCCGCCGCGGGCCCGGAGCCCATCCGCTCCC
GAGCCGAGGCGCTATTTCGGCGGCTTTCCTTCCTCGACGGCGACGGCGTG
TGGCTCTTGCTCATGCAGACCTTGGACAACGCCTCCCAGCAACCAAACCC
GCCGCAGCGCGCCTCCCTTGGCGGTGGAGGGGCACCCGCAACTGCAGGGG
GGGGGCGCAGCCGCGCGGGAAAACGGGTGGCAGCACCAGGGGTAGTAGCG
GCGGCGACACCGCGAGGGGCGGGGCCTAGGAGCTTGGCTGTGGGGAACAG
AGAGGAGAGTAGTAGCGGCGGCGTCGGCGGTTCGGGCGCTTGGTGGTGGC
TACCAAAGGTACTGCCACCTGTCCCTTCAGTTCCGGAGGGCACGGCGTCA
GTGGTTGGCGTTGGCGGCGGAAGGCCTGCCGCTTTGCTTGAGAGTCGGGC
GGTGTTCAGCGGGAGCGCGGGGCGCGTTGCCGGAGAGTGCGCCCCTGCGG
CGGCCAGGCTGCTGGGCGTGCTGGGCGCCGGCGGCGCGGTGGCTGAGCAC
ATGTAGGTTGCCCTGGCATCGCTCCCGTGCCTTTCCGCCGCGGGCCCGGA
GCCCATCCGCTCCCGAGCCGAGGCGCTATTTCGGCGGCTTTCCTTCCTCG
ACGGCGACGGCGTGTGGCTCTTGCTCATGCAGACCTTGGACAACGCCTCC
CAGCAACCAAACCCGCCGCAGCGCGCCTCCCTTGGCGGTGGAGGGGCACC
CGCAACTGCAGGGGGGGGGCGCAGCCGCGCGGGAAAACGGGTGGCAGCAC
CAGGGGTAGTAGCGGCGGCGACACCGCGAGGGGCGGGGCCTAGGAGCTTG
GCTGTGGGGAACAGAGAGGAGAGTAGTAGCGGCGGCGTCGGCGGTTCGGG
CGCTTGGTGGTGGCTACCAAAGGTACTGCCACCTGTCCCTTCAGTTCCGG
AGGGCACGGCGTCAGTGGTTGGCGTTGGCGGCGGAAGGCCTGCCGCTTTG
CTTGAGAGTCGGGCGGTGTTCAGCGGGAGCGCGGGGCGCGTTGCCGGAGA
GTGCGCCCCTGCGGCGGCCAGGCTGCTGGGCGTGCTGGGCGCCGGCGGCG
CGGTGGCTGAGCACATGTAG
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