mRNA_L-elsbetiae_contig13970.2970.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13970.2970.1
Unique NamemRNA_L-elsbetiae_contig13970.2970.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: D8LBG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBG4_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 4.520e-71
Identity = 113/118 (95.76%), Postives = 115/118 (97.46%), Query Frame = 1
Query:    1 MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDCHAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYAKSLNKEARKKELHKITTENQ 354
            MDRGRRAMPVQNKAC+ERHVKKCQDNHR RLAKMKPTIDCHAPSSMRKVA KTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKY+KSLNK ARKKELHKITTENQ
Sbjct:    1 MDRGRRAMPVQNKACYERHVKKCQDNHRDRLAKMKPTIDCHAPSSMRKVATKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYSKSLNKGARKKELHKITTENQ 118          
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: A0A836CD52_9STRA (KIAA1430-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD52_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.920e-38
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    1 MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDCHAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGV----DNHNSTSKYAKSLNKEARKKELHKITTEN 351
            MDRGRRAMP  NKACHERHV+KCQD HR +L  +K TID   P ++R VA  TNAKKQQ+MEDRYAQIERDNR+LLEKMS IMR        ++  + ++YAKSLN+E+RK+EL +IT EN
Sbjct:    1 MDRGRRAMPTGNKACHERHVRKCQDLHRQQLTSIKSTIDNKPPKTLRAVAG-TNAKKQQLMEDRYAQIERDNRILLEKMSTIMRSRPTVALAESVEAQARYAKSLNRESRKRELQRITREN 120          
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: A0A7S2V2P0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2P0_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.560e-35
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    1 MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDCHAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYAKSLNKEARKKELHKITTENQ 354
            MDRGRRAMPV NK C++R++K CQ+ HR +LA MK  +D   P   +    + N KK+Q+MEDR+A IERDNR+LLEKMS+IMR+   DN N ++ YA SLNKEARK+EL KIT ENQ
Sbjct:    1 MDRGRRAMPVGNKTCNDRYIKMCQEKHRKKLADMKCRVDNKPPD--KPAHLRRNLKKEQLMEDRFATIERDNRILLEKMSYIMRRNQFDNTNESTAYAHSLNKEARKRELQKITRENQ 116          
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: A0A7S3USY4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY4_HETAK)

HSP 1 Score: 125 bits (315), Expect = 6.910e-34
Identity = 71/118 (60.17%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDCHAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYAKSLNKEARKKELHKITTENQ 354
            MDRGRRAMPV NK C++R V++ Q  HR +LA+MK  ID  AP   R    + N KK+Q+MEDR+A IERDNR+LLEKMS+IMR+   DN N +++YA SLNKEARK+EL +IT ENQ
Sbjct:    1 MDRGRRAMPVGNKLCNQRAVQQAQQKHRKKLAEMKCRIDNTAPD--RPAHLRRNLKKEQLMEDRFATIERDNRILLEKMSYIMRRNQFDNVNESTQYAHSLNKEARKRELQRITRENQ 116          
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: A0A7S2P7L5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7L5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 9.150e-30
Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    1 MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDCHAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMR-KGGVDNHNSTSKYAKSLNKEARKKELHKITTENQ 354
            MDRGR+AMPVQNKAC+ERHVKK        L  MK +ID   P     +  KT AKK  ++E+R  QIE +NRLLLEKMSHIMR KG +DN NS+S+Y +SLNK+ RK+EL +IT +N+
Sbjct:    1 MDRGRKAMPVQNKACNERHVKKXXXXXXXXLRDMKSSIDNKEPRMASHL--KTKAKKNALVEERLKQIETENRLLLEKMSHIMRCKGSIDNKNSSSQYGRSLNKDQRKRELTRITKQNK 117          
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: F0Y0R8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0R8_AURAN)

HSP 1 Score: 112 bits (281), Expect = 1.660e-29
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   25 PVQNKACHERHVKKCQDNHRLRLAKMKPTIDCHAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYAKSLNKEARKKELHKITTENQ 354
            P+ NK CH R VKKCQ+ H+ +L +MK +ID H P   R    + N KK+Q+ME+RYA+IERDNRLLLEKMS+IMR   +DN N    YA SLN+E RK+EL +IT ENQ
Sbjct:    1 PIGNKQCHARFVKKCQETHKKKLHEMKCSIDNHEPK--RHPHLRKNLKKEQLMEERYAEIERDNRLLLEKMSYIMRHSSLDNDNQMQ-YAHSLNREQRKRELQRITRENQ 107          
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: A0A8K1CSC9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSC9_PYTOL)

HSP 1 Score: 112 bits (279), Expect = 9.000e-29
Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    1 MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDC---HAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYAKSLNKEARKKELHKITTENQVHL 363
            MDRGR+A+P  NK    ++ +KCQ+ HRL+L  +K +ID    H P  +RK     N KK+Q+ E+RYA+IER+NR+LLEKMSHIM+   +DN N +  Y+ SLNKE+RK+EL KIT ENQ  L
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQKCQEIHRLKLNTIKSSIDNSEPHRPLHLRK-----NLKKEQMKEERYAEIERENRILLEKMSHIMQNETLDNKNQSITYSHSLNKESRKRELQKITAENQAIL 119          
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: A0A3R7GA00_9STRA (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=A0A3R7GA00_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.810e-27
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDC---HAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYAKSLNKEARKKELHKITTENQVHL 363
            MDRGR+A+P  NK    ++ +KCQ+ HR +L  +K +ID    H P+ +RK     N KK+Q+ E+RYA IER+NR+LLEKMS IM+   +DN N +  Y+ SLNKE RK+EL KIT+ENQ  L
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQKCQEIHRAKLYSIKSSIDNSEPHRPTHLRK-----NLKKEQMKEERYAAIERENRILLEKMSTIMQGESIDNKNQSLTYSHSLNKEQRKRELQKITSENQAIL 119          
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: K3WRK6_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WRK6_GLOUD)

HSP 1 Score: 107 bits (266), Expect = 8.640e-27
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    1 MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDCHAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYAKSLNKEARKKELHKITTENQVHL 363
            MDRGR+A+P  NK    ++ +KCQ+ HR +L  +K +ID   P   R    K N KK+Q+ E+RYA+IER+NR+LLEKMSHIM+   +DN N +  Y+ SLNK  RK+EL KIT+ENQ  L
Sbjct:    1 MDRGRKAIPTLNKHTDSKYYQKCQEIHRSKLNTIKSSIDNSEPH--RPTHLKKNLKKEQMKEERYAEIERENRILLEKMSHIMQNETLDNKNQSIVYSHSLNKGLRKRELQKITSENQAIL 119          
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Match: A0A7S2WX22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX22_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.730e-26
Identity = 60/122 (49.18%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDCHAPSSMRKVAAKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTS-KYAKSLNKEARKKELHKITTENQVHL 363
            MDR R+ MP+ NKAC++RHVKK Q+ HR RLA MK +IDC  P     +  + N KK+Q+ME+RYA+IE+DNRLLLE+MS+I++  G+D + +   K A SL ++ R++++ +IT +NQ+ L
Sbjct:    1 MDRFRKVMPMGNKACYDRHVKKNQERHRQRLASMKCSIDCAPPRRFPHL--ERNQKKEQLMEERYAEIEKDNRLLLERMSYILKCKGMDCYATPHMKLAHSLTRDERRRDMDRITRDNQLLL 120          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13970.2970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBG4_ECTSI4.520e-7195.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD52_9STRA2.920e-3863.64KIAA1430-like protein-domain-containing protein n=... [more]
A0A7S2V2P0_9STRA1.560e-3559.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3USY4_HETAK6.910e-3460.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2P7L5_9STRA9.150e-3057.14Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
F0Y0R8_AURAN1.660e-2957.27Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8K1CSC9_PYTOL9.000e-2952.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7GA00_9STRA4.810e-2750.81Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
K3WRK6_GLOUD8.640e-2751.24Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A7S2WX22_9STRA2.730e-2649.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13970contigL-elsbetiae_contig13970:626..1239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.9
Seed ortholog evalue6.5e-55
Seed eggNOG ortholog2880.D8LBG4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.KIAA1430 homologue
EggNOG OGs2ANFN@1,2RZE9@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionKIAA1430 homologue
Ec32 orthologEc-27_004060.1
Exons2
Model size372
Cds size372
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.815411-CDS-L-elsbetiae_contig13970:625..8081622815549.815411-CDS-L-elsbetiae_contig13970:625..808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13970 626..808 +
1691682953.5052996-CDS-L-elsbetiae_contig13970:625..8081691682953.5052996-CDS-L-elsbetiae_contig13970:625..808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13970 626..808 +
1622815549.8349662-CDS-L-elsbetiae_contig13970:1050..12391622815549.8349662-CDS-L-elsbetiae_contig13970:1050..1239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13970 1051..1239 +
1691682953.5147429-CDS-L-elsbetiae_contig13970:1050..12391691682953.5147429-CDS-L-elsbetiae_contig13970:1050..1239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13970 1051..1239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13970.2970.1prot_L-elsbetiae_contig13970.2970.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13970 626..1239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13970.2970.1

>prot_L-elsbetiae_contig13970.2970.1 ID=prot_L-elsbetiae_contig13970.2970.1|Name=mRNA_L-elsbetiae_contig13970.2970.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MDRGRRAMPVQNKACHERHVKKCQDNHRLRLAKMKPTIDCHAPSSMRKVA
AKTNAKKQQIMEDRYAQIERDNRLLLEKMSHIMRKGGVDNHNSTSKYAKS
LNKEARKKELHKITTENQVHLCV*
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mRNA from alignment at L-elsbetiae_contig13970:626..1239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13970.2970.1 ID=mRNA_L-elsbetiae_contig13970.2970.1|Name=mRNA_L-elsbetiae_contig13970.2970.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=614bp|location=Sequence derived from alignment at L-elsbetiae_contig13970:626..1239+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATAGGGGTCGACGCGCCATGCCGGTGCAGAATAAGGCCTGCCACGA GAGACACGTGAAGAAGTGCCAGGATAACCACCGCCTAAGGCTGGCCAAAA TGAAGCCGACAATCGATTGTCATGCTCCCTCCAGCATGCGAAAAGTGGCC GCCAAGACCAACGCCAAGAAACAACAGATCATGGTGAGCCAACCCCTGCC AAGGTCGAAGTACATGTACCATCACCACTTTTTTTTTAGTTTGGTCATCG GGCAAACTCTCTGTACCGGGCATACGAGGCTCAGAAGAACCATGAACAAC CCTGCCCTAAGCTGTAAGGTCGCTTCATCCTTCAACGGCACGGTCCAGCG TCCAGCGGTCCAGCTTCGCATCACCCTTCACCTTCTCCCCCTGCTGTGAT TGGCACCCTCCCTGGCTTGTTACAGGAGGACAGATACGCTCAGATCGAGC GTGACAATCGACTCCTCCTGGAAAAGATGTCTCACATCATGCGCAAAGGT GGCGTGGACAACCACAACAGCACGTCCAAATACGCGAAGTCTCTCAACAA GGAGGCACGCAAGAAGGAACTACACAAGATCACGACGGAGAATCAGGTAC ATCTATGTGTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13970:626..1239+

>mRNA_L-elsbetiae_contig13970.2970.1 ID=mRNA_L-elsbetiae_contig13970.2970.1|Name=mRNA_L-elsbetiae_contig13970.2970.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig13970:626..1239+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATAGGGGTCGACGCGCCATGCCGGTGCAGAATAAGGCCTGCCACGA
GAGACACGTGAAGAAGTGCCAGGATAACCACCGCCTAAGGCTGGCCAAAA
TGAAGCCGACAATCGATTGTCATGCTCCCTCCAGCATGCGAAAAGTGGCC
GCCAAGACCAACGCCAAGAAACAACAGATCATGATGGATAGGGGTCGACG
CGCCATGCCGGTGCAGAATAAGGCCTGCCACGAGAGACACGTGAAGAAGT
GCCAGGATAACCACCGCCTAAGGCTGGCCAAAATGAAGCCGACAATCGAT
TGTCATGCTCCCTCCAGCATGCGAAAAGTGGCCGCCAAGACCAACGCCAA
GAAACAACAGATCATGGAGGACAGATACGCTCAGATCGAGCGTGACAATC
GACTCCTCCTGGAAAAGATGTCTCACATCATGCGCAAAGGTGGCGTGGAC
AACCACAACAGCACGTCCAAATACGCGAAGTCTCTCAACAAGGAGGCACG
CAAGAAGGAACTACACAAGATCACGACGGAGAATCAGGTACATCTATGTG
TGTAAGAGGACAGATACGCTCAGATCGAGCGTGACAATCGACTCCTCCTG
GAAAAGATGTCTCACATCATGCGCAAAGGTGGCGTGGACAACCACAACAG
CACGTCCAAATACGCGAAGTCTCTCAACAAGGAGGCACGCAAGAAGGAAC
TACACAAGATCACGACGGAGAATCAGGTACATCTATGTGTGTAA
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