mRNA_L-elsbetiae_contig13792.2870.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13792.2870.1
Unique NamemRNA_L-elsbetiae_contig13792.2870.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13792.2870.1 vs. uniprot
Match: D7G361_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G361_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.030e-13
Identity = 123/222 (55.41%), Postives = 139/222 (62.61%), Query Frame = 1 
Query:    1 SSKRGCSGGSPCEHCEKRGKACVYAKRRKSGPRGRPAAGRSSKGRSRAXXXXXXXXXXXXXXXXXXXT------SP-PTLVKTP------GDAGDAEXXXXXXXXSGSGRDGVADENAVSRN----DETALEWEKRRLS-RHHXXXXXXXXXXXXXXXXXXXXXXXXRQQKAVAPKLQRR-PGEKWHPLLVESPT--PWDHGAASGKLEIPLPPSPALVLPP 603
            SSKRGCSGG PC+ CEKRGK C+YA+RRKSGPR RPA+GRSSKGRS  XXXXXXXXXXXXXXXXXXX       SP P + ++P      G AG  E        S  G +  A+   V R      E A E E+RRL    H XXXXXXXXXXXXXXXXXXXXXXX+    V P+  R  PG   +PLLV S    P      SG+LE+P+PP  A VL P
Sbjct:   25 SSKRGCSGGEPCDQCEKRGKPCIYAQRRKSGPRSRPASGRSSKGRSXXXXXXXXXXXXXXXXXXXXXXXXXXVESPSPVIARSPPSPAASGLAG--EDRVGVVAGSWDGGEAAAEVTEVERRRGSIGEDAWERERRRLGFTTHDXXXXXXXXXXXXXXXXXXXXXXXKPPDLVIPRPHRTDPGSTANPLLVRSSPAPPXXXXXXSGRLEVPMPPRSAHVLSP 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13792.2870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G361_ECTSI2.030e-1355.41Zn(2)-C6 fungal-type domain-containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13792contigL-elsbetiae_contig13792:118..2466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-03_004620.1
Exons3
Model size2187
Cds size2187
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13792.2870.1prot_L-elsbetiae_contig13792.2870.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13792 118..2466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.2467096-CDS-L-elsbetiae_contig13792:117..6201622815539.2467096-CDS-L-elsbetiae_contig13792:117..620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13792 118..620 +
1691682948.0274978-CDS-L-elsbetiae_contig13792:117..6201691682948.0274978-CDS-L-elsbetiae_contig13792:117..620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13792 118..620 +
1622815539.2590995-CDS-L-elsbetiae_contig13792:692..21001622815539.2590995-CDS-L-elsbetiae_contig13792:692..2100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13792 693..2100 +
1691682948.040174-CDS-L-elsbetiae_contig13792:692..21001691682948.040174-CDS-L-elsbetiae_contig13792:692..2100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13792 693..2100 +
1622815539.271572-CDS-L-elsbetiae_contig13792:2190..24661622815539.271572-CDS-L-elsbetiae_contig13792:2190..2466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13792 2191..2466 +
1691682948.0500371-CDS-L-elsbetiae_contig13792:2190..24661691682948.0500371-CDS-L-elsbetiae_contig13792:2190..2466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13792 2191..2466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13792.2870.1

>prot_L-elsbetiae_contig13792.2870.1 ID=prot_L-elsbetiae_contig13792.2870.1|Name=mRNA_L-elsbetiae_contig13792.2870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=729bp
SSKRGCSGGSPCEHCEKRGKACVYAKRRKSGPRGRPAAGRSSKGRSRAKA
RRESRAAAASAPASAEATSPPTLVKTPGDAGDAEDDGDDDDDSGSGRDGV
ADENAVSRNDETALEWEKRRLSRHHHHHHKQQQQQQQQQQQQTQTQTQKR
QQKAVAPKLQRRPGEKWHPLLVESPTPWDHGAASGKLEIPLPPSPALVLP
PTTNRGWVSAQGGGGEGRGRGEGPVALPRASSDQPAGSNKRARLSLALPA
PPSLASPSSSSQARGLSTLLLSRSTSLDRGGGGGGGGGGGNGGSGGGPAG
RWLSPFWNPPNVFSSFPSSRAPYGAPARSMSGSQHARGEVRGSVRPAPPH
PSISAWSGDGEDCGGQDGRVVDELESALGALFPMRGENMQQEQPQRRDQH
WQAHAHRLLPQDPQDRQRAQHQHQQQHQQQHQQQQQQQWRPPSTRQLSLG
SLLMCEDEELGASSNDDGDESSMTASLEGHETALTTAVTPMGDAPSQRGR
RRQRNTADSPPHGMVRVSPVDEVLARTVSTGSCAAGNAERGGHVSSYAAS
AGGALPALTAAGRVGGCGWSGDNLPPPAPGSQAFQQPLPFPLNRRTSDIA
ALMMTTTSSWGGPAAAAAAATVAQEGGATGGDFSGRASASAAAAAAASSR
LDCASMANLRTPLTREASLLQAVEAVASPPVGDPRPPRLSWEESLTRAME
VVAAPSGGGGDGDHGEAAAELVAGAGLGD
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mRNA from alignment at L-elsbetiae_contig13792:118..2466+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13792.2870.1 ID=mRNA_L-elsbetiae_contig13792.2870.1|Name=mRNA_L-elsbetiae_contig13792.2870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2349bp|location=Sequence derived from alignment at L-elsbetiae_contig13792:118..2466+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGTAAGCGGGGATGCAGCGGCGGATCCCCGTGCGAGCACTGCGAGAA
GAGAGGCAAGGCGTGCGTCTACGCCAAGCGCCGCAAGAGCGGCCCCCGCG
GCCGCCCCGCCGCCGGACGGTCGAGCAAGGGTCGCTCCCGTGCCAAGGCC
CGTCGTGAGAGCCGCGCTGCCGCGGCTTCGGCTCCGGCGTCGGCGGAGGC
AACGAGTCCTCCCACTCTGGTGAAGACCCCCGGAGACGCCGGAGACGCCG
AAGACGACGGCGACGACGACGACGACTCTGGGTCGGGGCGCGACGGTGTC
GCGGATGAAAATGCCGTGAGCCGAAACGACGAGACCGCCTTGGAGTGGGA
GAAGCGGAGGCTGAGTCGCCACCATCACCACCACCACAAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGACGCAGACACAGACACAGAAGCGA
CAACAGAAAGCGGTGGCGCCGAAACTTCAACGACGGCCTGGAGAGAAGTG
GCAGTCTCGACCGCCCACGATTCCGGCTCTGCCAGCCTCGTTGCCATGCC
GTGACACCTCCGGGCGGGTCGTGAGCCCGCTGCTCGTCGAGTCGCCGACA
CCCTGGGACCACGGTGCCGCTTCGGGAAAGCTCGAGATACCGCTGCCGCC
TTCGCCCGCTCTCGTCCTGCCGCCAACGACAAACCGGGGGTGGGTCAGCG
CGCAAGGTGGGGGGGGCGAAGGGCGCGGCCGGGGGGAAGGGCCCGTGGCT
CTGCCCCGCGCTTCTTCGGACCAGCCCGCCGGCAGCAACAAGCGCGCAAG
GTTATCCCTCGCTCTCCCGGCACCCCCGTCCCTGGCTTCCCCCTCCTCCT
CTTCCCAGGCCCGCGGCCTCTCCACCCTCCTCTTGTCGAGGTCGACCTCG
TTGGACCGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAACGGTGG
TAGTGGTGGTGGTCCGGCTGGCCGGTGGCTTTCCCCCTTTTGGAACCCTC
CGAATGTCTTCTCTTCCTTCCCTTCTTCTCGCGCTCCCTACGGGGCCCCG
GCACGTTCGATGTCCGGGTCTCAGCATGCGAGAGGTGAGGTTCGGGGCTC
AGTGCGGCCGGCGCCGCCGCATCCGAGTATATCTGCTTGGAGCGGCGACG
GCGAAGACTGCGGCGGCCAAGATGGCCGAGTTGTGGACGAGTTGGAGAGC
GCGCTCGGGGCGCTGTTTCCGATGAGGGGAGAAAATATGCAGCAGGAGCA
ACCGCAGCGGCGGGATCAACACTGGCAAGCCCATGCCCATCGACTTCTCC
CCCAGGACCCACAAGACCGGCAGAGGGCACAGCACCAGCACCAGCAACAG
CACCAGCAACAGCACCAGCAACAGCAACAGCAACAGTGGCGCCCACCGTC
AACACGGCAGCTTTCTCTGGGGTCCTTGCTGATGTGCGAAGACGAGGAGC
TCGGCGCATCCTCCAACGACGACGGCGACGAAAGCTCCATGACTGCCAGC
CTCGAGGGCCACGAGACCGCCCTAACCACGGCCGTTACCCCGATGGGTGA
CGCCCCGTCTCAGCGCGGACGCCGCCGTCAAAGAAACACCGCCGACTCGC
CTCCTCACGGCATGGTTCGCGTCTCTCCCGTAGACGAGGTACTAGCGCGA
ACGGTCTCCACGGGGTCCTGCGCTGCCGGTAACGCGGAACGCGGCGGTCA
CGTCTCATCTTATGCAGCTTCCGCCGGAGGTGCTCTGCCGGCGTTAACCG
CCGCCGGCCGCGTCGGCGGTTGTGGGTGGAGCGGCGACAATCTTCCCCCT
CCGGCACCTGGCTCCCAGGCATTCCAGCAGCCGCTCCCTTTCCCTCTCAA
CCGGCGTACTTCCGACATCGCGGCGCTCATGATGACGACGACATCGTCGT
GGGGAGGGCCGGCAGCGGCGGCGGCGGCGGCGACGGTGGCGCAGGAGGGG
GGGGCAACAGGAGGAGACTTCTCAGGACGCGCGGTTCGAGGGCAGGGAGC
GGCTCTGCAGGCCGCGCTGCCACAAGCAGTAGTCCTCGACCGCAGCAGTA
GCGCCGAGATCTTCGGTGGCGAGTCAGCGTCCGCCGCCGCCGCCGCCGCC
GCCTCCAGTCGGCTCGACTGCGCGTCCATGGCCAACCTGCGCACGCCACT
GACGCGCGAGGCGTCCCTCCTGCAGGCCGTCGAGGCCGTGGCCTCCCCGC
CCGTCGGCGACCCGCGCCCCCCCCGCCTCTCATGGGAGGAATCACTCACT
CGGGCGATGGAGGTCGTCGCCGCTCCCAGCGGCGGCGGCGGCGACGGCGA
TCACGGGGAAGCGGCCGCGGAGCTGGTGGCCGGTGCTGGTCTGGGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13792:118..2466+

>mRNA_L-elsbetiae_contig13792.2870.1 ID=mRNA_L-elsbetiae_contig13792.2870.1|Name=mRNA_L-elsbetiae_contig13792.2870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4374bp|location=Sequence derived from alignment at L-elsbetiae_contig13792:118..2466+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGTAAGCGGGGATGCAGCGGCGGATCCCCGTGCGAGCACTGCGAGAA
GAGAGGCAAGGCGTGCGTCTACGCCAAGCGCCGCAAGAGCGGCCCCCGCG
GCCGCCCCGCCGCCGGACGGTCGAGCAAGGGTCGCTCCCGTGCCAAGGCC
CGTCGTGAGAGCCGCGCTGCCGCGGCTTCGGCTCCGGCGTCGGCGGAGGC
AACGAGTCCTCCCACTCTGGTGAAGACCCCCGGAGACGCCGGAGACGCCG
AAGACGACGGCGACGACGACGACGACTCTGGGTCGGGGCGCGACGGTGTC
GCGGATGAAAATGCCGTGAGCCGAAACGACGAGACCGCCTTGGAGTGGGA
GAAGCGGAGGCTGAGTCGCCACCATCACCACCACCACAAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGACGCAGACACAGACACAGAAGCGA
CAACAGAAAGCGGTGGCGCCGAAACTTCAACGACGGCCTGGAGAGAAGTG
GCAAGCAGTAAGCGGGGATGCAGCGGCGGATCCCCGTGCGAGCACTGCGA
GAAGAGAGGCAAGGCGTGCGTCTACGCCAAGCGCCGCAAGAGCGGCCCCC
GCGGCCGCCCCGCCGCCGGACGGTCGAGCAAGGGTCGCTCCCGTGCCAAG
GCCCGTCGTGAGAGCCGCGCTGCCGCGGCTTCGGCTCCGGCGTCGGCGGA
GGCAACGAGTCCTCCCACTCTGGTGAAGACCCCCGGAGACGCCGGAGACG
CCGAAGACGACGGCGACGACGACGACGACTCTGGGTCGGGGCGCGACGGT
GTCGCGGATGAAAATGCCGTGAGCCGAAACGACGAGACCGCCTTGGAGTG
GGAGAAGCGGAGGCTGAGTCGCCACCATCACCACCACCACAAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGACGCAGACACAGACACAGAAG
CGACAACAGAAAGCGGTGGCGCCGAAACTTCAACGACGGCCTGGAGAGAA
GTGGCACCCGCTGCTCGTCGAGTCGCCGACACCCTGGGACCACGGTGCCG
CTTCGGGAAAGCTCGAGATACCGCTGCCGCCTTCGCCCGCTCTCGTCCTG
CCGCCAACGACAAACCGGGGGTGGGTCAGCGCGCAAGGTGGGGGGGGCGA
AGGGCGCGGCCGGGGGGAAGGGCCCGTGGCTCTGCCCCGCGCTTCTTCGG
ACCAGCCCGCCGGCAGCAACAAGCGCGCAAGGTTATCCCTCGCTCTCCCG
GCACCCCCGTCCCTGGCTTCCCCCTCCTCCTCTTCCCAGGCCCGCGGCCT
CTCCACCCTCCTCTTGTCGAGGTCGACCTCGTTGGACCGAGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCAACGGTGGTAGTGGTGGTGGTCCGGCT
GGCCGGTGGCTTTCCCCCTTTTGGAACCCTCCGAATGTCTTCTCTTCCTT
CCCTTCTTCTCGCGCTCCCTACGGGGCCCCGGCACGTTCGATGTCCGGGT
CTCAGCATGCGAGAGGTGAGGTTCGGGGCTCAGTGCGGCCGGCGCCGCCG
CATCCGAGTATATCTGCTTGGAGCGGCGACGGCGAAGACTGCGGCGGCCA
AGATGGCCGAGTTGTGGACGAGTTGGAGAGCGCGCTCGGGGCGCTGTTTC
CGATGAGGGGAGAAAATATGCAGCAGGAGCAACCGCAGCGGCGGGATCAA
CACTGGCAAGCCCATGCCCATCGACTTCTCCCCCAGGACCCACAAGACCG
GCAGAGGGCACAGCACCAGCACCAGCAACAGCACCAGCAACAGCACCAGC
AACAGCAACAGCAACAGTGGCGCCCACCGTCAACACGGCAGCTTTCTCTG
GGGTCCTTGCTGATGTGCGAAGACGAGGAGCTCGGCGCATCCTCCAACGA
CGACGGCGACGAAAGCTCCATGACTGCCAGCCTCGAGGGCCACGAGACCG
CCCTAACCACGGCCGTTACCCCGATGGGTGACGCCCCGTCTCAGCGCGGA
CGCCGCCGTCAAAGAAACACCGCCGACTCGCCTCCTCACGGCATGGTTCG
CGTCTCTCCCGTAGACGAGGTACTAGCGCGAACGGTCTCCACGGGGTCCT
GCGCTGCCGGTAACGCGGAACGCGGCGGTCACGTCTCATCTTATGCAGCT
TCCGCCGGAGGTGCTCTGCCGGCGTTAACCGCCGCCGGCCGCGTCGGCGG
TTGTGGGTGGAGCGGCGACAATCTTCCCCCTCCGGCACCTGGCTCCCAGG
CATTCCAGCAGCCGCTCCCTTTCCCTCTCAACCGGCGTACTTCCGACATC
GCGGCGCTCATGATGACGACGACATCGTCGTGGGGAGGGCCGGCAGCGGC
GGCGGCGGCGGCGACGGTGGCGCAGGAGGGGGGGGCAACAGGAGGAGACT
TCTCAGGACGCGCGCCCGCTGCTCGTCGAGTCGCCGACACCCTGGGACCA
CGGTGCCGCTTCGGGAAAGCTCGAGATACCGCTGCCGCCTTCGCCCGCTC
TCGTCCTGCCGCCAACGACAAACCGGGGGTGGGTCAGCGCGCAAGGTGGG
GGGGGCGAAGGGCGCGGCCGGGGGGAAGGGCCCGTGGCTCTGCCCCGCGC
TTCTTCGGACCAGCCCGCCGGCAGCAACAAGCGCGCAAGGTTATCCCTCG
CTCTCCCGGCACCCCCGTCCCTGGCTTCCCCCTCCTCCTCTTCCCAGGCC
CGCGGCCTCTCCACCCTCCTCTTGTCGAGGTCGACCTCGTTGGACCGAGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAACGGTGGTAGTGGTGGTG
GTCCGGCTGGCCGGTGGCTTTCCCCCTTTTGGAACCCTCCGAATGTCTTC
TCTTCCTTCCCTTCTTCTCGCGCTCCCTACGGGGCCCCGGCACGTTCGAT
GTCCGGGTCTCAGCATGCGAGAGGTGAGGTTCGGGGCTCAGTGCGGCCGG
CGCCGCCGCATCCGAGTATATCTGCTTGGAGCGGCGACGGCGAAGACTGC
GGCGGCCAAGATGGCCGAGTTGTGGACGAGTTGGAGAGCGCGCTCGGGGC
GCTGTTTCCGATGAGGGGAGAAAATATGCAGCAGGAGCAACCGCAGCGGC
GGGATCAACACTGGCAAGCCCATGCCCATCGACTTCTCCCCCAGGACCCA
CAAGACCGGCAGAGGGCACAGCACCAGCACCAGCAACAGCACCAGCAACA
GCACCAGCAACAGCAACAGCAACAGTGGCGCCCACCGTCAACACGGCAGC
TTTCTCTGGGGTCCTTGCTGATGTGCGAAGACGAGGAGCTCGGCGCATCC
TCCAACGACGACGGCGACGAAAGCTCCATGACTGCCAGCCTCGAGGGCCA
CGAGACCGCCCTAACCACGGCCGTTACCCCGATGGGTGACGCCCCGTCTC
AGCGCGGACGCCGCCGTCAAAGAAACACCGCCGACTCGCCTCCTCACGGC
ATGGTTCGCGTCTCTCCCGTAGACGAGGTACTAGCGCGAACGGTCTCCAC
GGGGTCCTGCGCTGCCGGTAACGCGGAACGCGGCGGTCACGTCTCATCTT
ATGCAGCTTCCGCCGGAGGTGCTCTGCCGGCGTTAACCGCCGCCGGCCGC
GTCGGCGGTTGTGGGTGGAGCGGCGACAATCTTCCCCCTCCGGCACCTGG
CTCCCAGGCATTCCAGCAGCCGCTCCCTTTCCCTCTCAACCGGCGTACTT
CCGACATCGCGGCGCTCATGATGACGACGACATCGTCGTGGGGAGGGCCG
GCAGCGGCGGCGGCGGCGGCGACGGTGGCGCAGGAGGGGGGGGCAACAGG
AGGAGACTTCTCAGGACGCGCGTCAGCGTCCGCCGCCGCCGCCGCCGCCG
CCTCCAGTCGGCTCGACTGCGCGTCCATGGCCAACCTGCGCACGCCACTG
ACGCGCGAGGCGTCCCTCCTGCAGGCCGTCGAGGCCGTGGCCTCCCCGCC
CGTCGGCGACCCGCGCCCCCCCCGCCTCTCATGGGAGGAATCACTCACTC
GGGCGATGGAGGTCGTCGCCGCTCCCAGCGGCGGCGGCGGCGACGGCGAT
CACGGGGAAGCGGCCGCGGAGCTGGTGGCCGGTGCTGGTCTGGGGGACTC
AGCGTCCGCCGCCGCCGCCGCCGCCGCCTCCAGTCGGCTCGACTGCGCGT
CCATGGCCAACCTGCGCACGCCACTGACGCGCGAGGCGTCCCTCCTGCAG
GCCGTCGAGGCCGTGGCCTCCCCGCCCGTCGGCGACCCGCGCCCCCCCCG
CCTCTCATGGGAGGAATCACTCACTCGGGCGATGGAGGTCGTCGCCGCTC
CCAGCGGCGGCGGCGGCGACGGCGATCACGGGGAAGCGGCCGCGGAGCTG
GTGGCCGGTGCTGGTCTGGGGGAC
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