mRNA_L-elsbetiae_contig13755.2846.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13755.2846.1
Unique NamemRNA_L-elsbetiae_contig13755.2846.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: D7G6T2_ECTSI (Phytochrome-like protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6T2_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.370e-19
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  124 DSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARWNGPTGVDATAGAG 348
            D LEVTGD RRIK I+QNLV+NAIKFTP GGKV  SL+ FDSL    +WW KE+GRF    W   +G ++  G G
Sbjct:  646 DVLEVTGDMRRIKAIVQNLVNNAIKFTPSGGKVRISLVVFDSLQEVTDWWAKETGRFGAQTWMASSGGESAPGTG 720          
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: D7G163_ECTSI (Phytochrome-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G163_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 7.780e-17
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  124 DSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARWNG-PTGVDATAGAGEDA 357
            D+ EV GD RRIK ++QNLV+NAIKFTP GGKV  S    DSL  A +WW KE+ RF+ + W G PTG D TA A +DA
Sbjct:  635 DTFEVVGDMRRIKTVVQNLVNNAIKFTPRGGKVAASHRVLDSLQDATDWWTKETNRFEASTWIGSPTG-DMTAVASQDA 712          
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A6H5LI29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI29_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 6.850e-16
Identity = 53/120 (44.17%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    1 MNQFATRKSLEFTTTVGTTASSCSSXXXXGSGDAEGKGELLDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARWNGPTGVDATAGAGEDAG 360
            M QFATRK++E +  V  T                  GEL     V GDERRIK I+QNLV+NAIKFTP GGKV  SLL FD+      WW +++ RF+   W    GVD     G D G
Sbjct:  616 MKQFATRKTIELSKKVEQTV-----------------GELT----VAGDERRIKHIVQNLVNNAIKFTPTGGKVEVSLLVFDAPEKVQAWWDEQAARFESRCWK---GVDVKNDRGNDTG 711          
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A0K1H350_PETFA (Phytochrome (Fragment) n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A0K1H350_PETFA)

HSP 1 Score: 78.2 bits (191), Expect = 2.080e-14
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  133 EVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARW 309
            EV GD RRI+ ++QNLV+NA+KFTP GGKVH SL+ FDSL  A +WW  E  RF+   W
Sbjct:  580 EVVGDVRRIRAVIQNLVNNAVKFTPCGGKVHVSLVAFDSLQKATDWWTSERERFNANVW 638          
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A6H5K877_9PHAE (Histidine kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K877_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.970e-9
Identity = 40/77 (51.95%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 MNQFATRKSLEFTTTVGTTASSCSSXXXXGSGDAEGKGELLDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTS 231
            MNQFATRK++E +  V  T                  GEL     VTGDERRIK I+QNLV+NAIKFTP GGKV  S
Sbjct:  130 MNQFATRKTIELSKKVEQTV-----------------GELA----VTGDERRIKHIVQNLVNNAIKFTPTGGKVEVS 185          
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: D7FU21_ECTSI (Phytochrome-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU21_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.420e-8
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 1
Query:  151 RRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARWNG 315
            RRIK I+Q L+SNAIKFTP GGKV  S   F S      WW +++ RFD+  W G
Sbjct:  439 RRIKHIVQILMSNAIKFTPSGGKVEVSHFVFASPQDTANWWAEQTARFDDHVWIG 493          
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: UPI001BD5DE41 (HAMP domain-containing histidine kinase n=1 Tax=Glaciihabitans sp. dw_435 TaxID=2720081 RepID=UPI001BD5DE41)

HSP 1 Score: 53.1 bits (126), Expect = 1.140e-5
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1
Query:  115 ELLDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLL-TFDSL 252
            EL D+LE + D  R+  +MQNLVSNAIK+TP GG+V   L+ +FD L
Sbjct:  421 ELDDALEASVDPDRLAQVMQNLVSNAIKYTPAGGRVDVGLVQSFDQL 467          
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A2D4VJH8_9HYPH (Histidine kinase n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VJH8_9HYPH)

HSP 1 Score: 51.6 bits (122), Expect = 3.890e-5
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1
Query:  115 ELLDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDS 249
            E LD L V GDE R++ I+ NL+SNA+KFTP GG+V  +     S
Sbjct:  341 ETLDGLIVLGDEGRLRQILSNLISNAVKFTPEGGRVSLNAFIVSS 385          
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: W9HD69_9PROT (Histidine kinase n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9HD69_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 4.090e-5
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:  124 DSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGG 258
            D+  V GDE+RI+ I+ NL+SNA+K+TP GG+V T +   DS GG
Sbjct:  442 DARFVRGDEKRIRQILLNLISNAVKYTPSGGRV-TVITDLDSFGG 485          
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A1V5VJ56_9BACT (Histidine kinase n=1 Tax=Elusimicrobia bacterium ADurb.Bin231 TaxID=1852873 RepID=A0A1V5VJ56_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 5.290e-5
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 1
Query:  121 LDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTS 231
            ++ +++ GDE RIK ++ NL+SNAIKFTPG GK+  S
Sbjct:  332 INMIKINGDENRIKQVLTNLISNAIKFTPGNGKITVS 368          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G6T2_ECTSI7.370e-1958.67Phytochrome-like protein 3 n=2 Tax=Ectocarpus TaxI... [more]
D7G163_ECTSI7.780e-1758.23Phytochrome-like protein n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5LI29_9PHAE6.850e-1644.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0K1H350_PETFA2.080e-1459.32Phytochrome (Fragment) n=1 Tax=Petalonia fascia Ta... [more]
A0A6H5K877_9PHAE2.970e-951.95Histidine kinase domain-containing protein n=1 Tax... [more]
D7FU21_ECTSI2.420e-852.73Phytochrome-like protein 2 n=1 Tax=Ectocarpus sili... [more]
UPI001BD5DE411.140e-555.32HAMP domain-containing histidine kinase n=1 Tax=Gl... [more]
A0A2D4VJH8_9HYPH3.890e-551.11Histidine kinase n=2 Tax=Parvibaculum TaxID=256616... [more]
W9HD69_9PROT4.090e-553.33Histidine kinase n=1 Tax=Skermanella stibiiresiste... [more]
A0A1V5VJ56_9BACT5.290e-554.05Histidine kinase n=1 Tax=Elusimicrobia bacterium A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13755contigL-elsbetiae_contig13755:3183..3542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue9.8e-16
Seed eggNOG ortholog2880.D7G6T2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphorelay sensor kinase activity
EggNOG OGsCOG0642@1,KOG0519@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size361
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.1805675-CDS-L-elsbetiae_contig13755:3182..35421622815537.1805675-CDS-L-elsbetiae_contig13755:3182..3542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13755 3183..3542 +
1691682946.855-CDS-L-elsbetiae_contig13755:3182..35421691682946.855-CDS-L-elsbetiae_contig13755:3182..3542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13755 3183..3542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13755.2846.1prot_L-elsbetiae_contig13755.2846.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13755 3183..3542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13755.2846.1

>prot_L-elsbetiae_contig13755.2846.1 ID=prot_L-elsbetiae_contig13755.2846.1|Name=mRNA_L-elsbetiae_contig13755.2846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MNQFATRKSLEFTTTVGTTASSCSSSSRSGSGDAEGKGELLDSLEVTGDE
RRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDE
ARWNGPTGVDATAGAGEDAG
back to top

mRNA from alignment at L-elsbetiae_contig13755:3183..3542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13755.2846.1 ID=mRNA_L-elsbetiae_contig13755.2846.1|Name=mRNA_L-elsbetiae_contig13755.2846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig13755:3183..3542+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCAGTTCGCCACCAGGAAATCGCTCGAGTTCACCACGACCGTCGG GACGACGGCTTCCTCCTGCTCCTCGTCCTCCCGTTCCGGGTCGGGCGACG CCGAGGGCAAGGGCGAGCTGCTAGACTCGCTGGAAGTCACCGGCGACGAA CGGCGCATCAAGGACATCATGCAGAACCTCGTCAGCAACGCCATCAAGTT CACGCCCGGCGGGGGGAAGGTGCACACGTCCCTGCTCACGTTCGACTCCT TGGGGGGCGCGAACGAGTGGTGGAGGAAGGAGAGCGGCCGGTTCGACGAG GCGCGGTGGAACGGCCCCACCGGAGTCGACGCCACGGCTGGTGCCGGTGA AGACGCCGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13755:3183..3542+

>mRNA_L-elsbetiae_contig13755.2846.1 ID=mRNA_L-elsbetiae_contig13755.2846.1|Name=mRNA_L-elsbetiae_contig13755.2846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig13755:3183..3542+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCAGTTCGCCACCAGGAAATCGCTCGAGTTCACCACGACCGTCGG
GACGACGGCTTCCTCCTGCTCCTCGTCCTCCCGTTCCGGGTCGGGCGACG
CCGAGGGCAAGGGCGAGCTGCTAGACTCGCTGGAAGTCACCGGCGACGAA
CGGCGCATCAAGGACATCATGCAGAACCTCGTCAGCAACGCCATCAAGTT
CACGCCCGGCGGGGGGAAGGTGCACACGTCCCTGCTCACGTTCGACTCCT
TGGGGGGCGCGAACGAGTGGTGGAGGAAGGAGAGCGGCCGGTTCGACGAG
GCGCGGTGGAACGGCCCCACCGGAGTCGACGCCACGGCTGGTGCCGGTGA
AGACGCCGGAATGAACCAGTTCGCCACCAGGAAATCGCTCGAGTTCACCA
CGACCGTCGGGACGACGGCTTCCTCCTGCTCCTCGTCCTCCCGTTCCGGG
TCGGGCGACGCCGAGGGCAAGGGCGAGCTGCTAGACTCGCTGGAAGTCAC
CGGCGACGAACGGCGCATCAAGGACATCATGCAGAACCTCGTCAGCAACG
CCATCAAGTTCACGCCCGGCGGGGGGAAGGTGCACACGTCCCTGCTCACG
TTCGACTCCTTGGGGGGCGCGAACGAGTGGTGGAGGAAGGAGAGCGGCCG
GTTCGACGAGGCGCGGTGGAACGGCCCCACCGGAGTCGACGCCACGGCTG
GTGCCGGTGAAGACGCCGGA
back to top