mRNA_L-elsbetiae_contig13755.2846.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: D7G6T2_ECTSI (Phytochrome-like protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6T2_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 7.370e-19 Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1 Query: 124 DSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARWNGPTGVDATAGAG 348 D LEVTGD RRIK I+QNLV+NAIKFTP GGKV SL+ FDSL +WW KE+GRF W +G ++ G G Sbjct: 646 DVLEVTGDMRRIKAIVQNLVNNAIKFTPSGGKVRISLVVFDSLQEVTDWWAKETGRFGAQTWMASSGGESAPGTG 720
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: D7G163_ECTSI (Phytochrome-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G163_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 7.780e-17 Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 124 DSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARWNG-PTGVDATAGAGEDA 357 D+ EV GD RRIK ++QNLV+NAIKFTP GGKV S DSL A +WW KE+ RF+ + W G PTG D TA A +DA Sbjct: 635 DTFEVVGDMRRIKTVVQNLVNNAIKFTPRGGKVAASHRVLDSLQDATDWWTKETNRFEASTWIGSPTG-DMTAVASQDA 712
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A6H5LI29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI29_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 6.850e-16 Identity = 53/120 (44.17%), Postives = 63/120 (52.50%), Query Frame = 1 Query: 1 MNQFATRKSLEFTTTVGTTASSCSSXXXXGSGDAEGKGELLDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARWNGPTGVDATAGAGEDAG 360 M QFATRK++E + V T GEL V GDERRIK I+QNLV+NAIKFTP GGKV SLL FD+ WW +++ RF+ W GVD G D G Sbjct: 616 MKQFATRKTIELSKKVEQTV-----------------GELT----VAGDERRIKHIVQNLVNNAIKFTPTGGKVEVSLLVFDAPEKVQAWWDEQAARFESRCWK---GVDVKNDRGNDTG 711
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A0K1H350_PETFA (Phytochrome (Fragment) n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A0K1H350_PETFA) HSP 1 Score: 78.2 bits (191), Expect = 2.080e-14 Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1 Query: 133 EVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARW 309 EV GD RRI+ ++QNLV+NA+KFTP GGKVH SL+ FDSL A +WW E RF+ W Sbjct: 580 EVVGDVRRIRAVIQNLVNNAVKFTPCGGKVHVSLVAFDSLQKATDWWTSERERFNANVW 638
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A6H5K877_9PHAE (Histidine kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K877_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 2.970e-9 Identity = 40/77 (51.95%), Postives = 45/77 (58.44%), Query Frame = 1 Query: 1 MNQFATRKSLEFTTTVGTTASSCSSXXXXGSGDAEGKGELLDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTS 231 MNQFATRK++E + V T GEL VTGDERRIK I+QNLV+NAIKFTP GGKV S Sbjct: 130 MNQFATRKTIELSKKVEQTV-----------------GELA----VTGDERRIKHIVQNLVNNAIKFTPTGGKVEVS 185
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: D7FU21_ECTSI (Phytochrome-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU21_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 2.420e-8 Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 1 Query: 151 RRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGGANEWWRKESGRFDEARWNG 315 RRIK I+Q L+SNAIKFTP GGKV S F S WW +++ RFD+ W G Sbjct: 439 RRIKHIVQILMSNAIKFTPSGGKVEVSHFVFASPQDTANWWAEQTARFDDHVWIG 493
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: UPI001BD5DE41 (HAMP domain-containing histidine kinase n=1 Tax=Glaciihabitans sp. dw_435 TaxID=2720081 RepID=UPI001BD5DE41) HSP 1 Score: 53.1 bits (126), Expect = 1.140e-5 Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 115 ELLDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLL-TFDSL 252 EL D+LE + D R+ +MQNLVSNAIK+TP GG+V L+ +FD L Sbjct: 421 ELDDALEASVDPDRLAQVMQNLVSNAIKYTPAGGRVDVGLVQSFDQL 467
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A2D4VJH8_9HYPH (Histidine kinase n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VJH8_9HYPH) HSP 1 Score: 51.6 bits (122), Expect = 3.890e-5 Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 Query: 115 ELLDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDS 249 E LD L V GDE R++ I+ NL+SNA+KFTP GG+V + S Sbjct: 341 ETLDGLIVLGDEGRLRQILSNLISNAVKFTPEGGRVSLNAFIVSS 385
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: W9HD69_9PROT (Histidine kinase n=1 Tax=Skermanella stibiiresistens SB22 TaxID=1385369 RepID=W9HD69_9PROT) HSP 1 Score: 51.6 bits (122), Expect = 4.090e-5 Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 Query: 124 DSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTSLLTFDSLGG 258 D+ V GDE+RI+ I+ NL+SNA+K+TP GG+V T + DS GG Sbjct: 442 DARFVRGDEKRIRQILLNLISNAVKYTPSGGRV-TVITDLDSFGG 485
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Match: A0A1V5VJ56_9BACT (Histidine kinase n=1 Tax=Elusimicrobia bacterium ADurb.Bin231 TaxID=1852873 RepID=A0A1V5VJ56_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 5.290e-5 Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 1 Query: 121 LDSLEVTGDERRIKDIMQNLVSNAIKFTPGGGKVHTS 231 ++ +++ GDE RIK ++ NL+SNAIKFTPG GK+ S Sbjct: 332 INMIKINGDENRIKQVLTNLISNAIKFTPGNGKITVS 368 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13755.2846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13755.2846.1 >prot_L-elsbetiae_contig13755.2846.1 ID=prot_L-elsbetiae_contig13755.2846.1|Name=mRNA_L-elsbetiae_contig13755.2846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp MNQFATRKSLEFTTTVGTTASSCSSSSRSGSGDAEGKGELLDSLEVTGDEback to top mRNA from alignment at L-elsbetiae_contig13755:3183..3542+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13755.2846.1 ID=mRNA_L-elsbetiae_contig13755.2846.1|Name=mRNA_L-elsbetiae_contig13755.2846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig13755:3183..3542+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13755:3183..3542+ >mRNA_L-elsbetiae_contig13755.2846.1 ID=mRNA_L-elsbetiae_contig13755.2846.1|Name=mRNA_L-elsbetiae_contig13755.2846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig13755:3183..3542+ (Laminarionema elsbetiae ELsaHSoW15)back to top |