mRNA_L-elsbetiae_contig1370.2825.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1370.2825.1
Unique NamemRNA_L-elsbetiae_contig1370.2825.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 376 bits (966), Expect = 1.520e-125
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 
Query:    4 VGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 552
            VGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF
Sbjct:  459 VGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 641
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BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 1.030e-120
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 552
            KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF
Sbjct: 1082 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 1265
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BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 340 bits (872), Expect = 8.440e-107
Identity = 158/184 (85.87%), Postives = 174/184 (94.57%), Query Frame = 1 
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 552
            K G+L GTEGDATPFTDVTVA++SS LH++G+QKHGNE MYSGHTGRML +KVFLGPTFYQRLKHLVDDKIHSRSRGPV  LTRQPMEGR RDGGLRMGEMERDCLISHGCANFLRDRLF+NSDAYRVHVC++CGLIA+ANLRK SFECRGC+ K+D+SQ+H+PYACKLLFQELMAMCIAPRMF
Sbjct:  996 KFGLLVGTEGDATPFTDVTVADISSRLHQMGYQKHGNETMYSGHTGRMLTSKVFLGPTFYQRLKHLVDDKIHSRSRGPVAMLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFLNSDAYRVHVCNRCGLIAIANLRKQSFECRGCRNKTDISQVHIPYACKLLFQELMAMCIAPRMF 1179
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BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A7S3Y3D8_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3D8_HETAK)

HSP 1 Score: 318 bits (816), Expect = 3.420e-105
Identity = 147/184 (79.89%), Postives = 166/184 (90.22%), Query Frame = 1 
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 552
            KV   TGTEGDATPFTDVTV N+S TLH++G+Q+HGNE M+SGHTGRML  KVFLGPTFYQRLKHLVDDKIH+RSRGPV  LTRQPMEGR +DGGLRMGEMERDCL++HG ANFLRDR F NSDAYR HVC+ CGL+A+ANLRKM FECRGC+ ++DV+QIH+PYACKLLFQELMAMCIAPR+F
Sbjct:  275 KVTSQTGTEGDATPFTDVTVENISDTLHRLGYQRHGNETMFSGHTGRMLKAKVFLGPTFYQRLKHLVDDKIHARSRGPVAMLTRQPMEGRAKDGGLRMGEMERDCLVAHGVANFLRDRFFANSDAYRAHVCNTCGLLAIANLRKMVFECRGCRNRTDVAQIHIPYACKLLFQELMAMCIAPRIF 458
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BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A7C9ANR9_OPUST (DNA-directed RNA polymerase n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ANR9_OPUST)

HSP 1 Score: 289 bits (739), Expect = 5.280e-97
Identity = 134/184 (72.83%), Postives = 154/184 (83.70%), Query Frame = 1 
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 552
            KV    G EGDATPFTDVTV N+S  LHK G+Q  G E MY+GHTGR L   +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR RDGGLR GEMERDC+I+HG A+FL++RLF  SDAYRVHVC++CGLIA+ANL+K SFECRGCK K+D+ Q+H+PYACKLLFQELM+M IAPRMF
Sbjct:   23 KVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMF 206
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BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A662XQG4_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG4_9STRA)

HSP 1 Score: 305 bits (781), Expect = 3.640e-95
Identity = 141/184 (76.63%), Postives = 162/184 (88.04%), Query Frame = 1 
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 552
            KV   TG EGDATPFTDVTV  ++ TLH +G+QKHGNEV+YSGHTGR L  ++F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQPMEGR R+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVCD CG+IA+ANLRKM+FECR C+ K+ +SQ+H+PY+CKLLFQELM+M IAPR+F
Sbjct:  753 KVSSQTGDEGDATPFTDVTVQAIADTLHNLGYQKHGNEVLYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYSCKLLFQELMSMSIAPRLF 936
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BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A7S0AH25_9STRA (DNA-directed RNA polymerase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH25_9STRA)

HSP 1 Score: 283 bits (723), Expect = 6.560e-95
Identity = 132/187 (70.59%), Postives = 156/187 (83.42%), Query Frame = 1 
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRG--CKGKSD-VSQIHVPYACKLLFQELMAMCIAPRMF 552
            KV V  G EGDATPFTDVTV ++S  LH +G+Q+HGNE +Y GHTGR LN +VF+GPTFYQRLKHLVDDK+HSR+RGPV  LTRQP+EGR RDGGLRMGEMERDCLI+HGCANFLRDR F NSD YR+H+C++CG+ A ANL+KM++ECR   C G+   + QI +PYACKLLFQELMAMCI  R+F
Sbjct:    2 KVVVFQGCEGDATPFTDVTVEDISMRLHAMGYQRHGNEALYQGHTGRPLNARVFIGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCANFLRDRFFCNSDQYRIHICERCGMTAQANLKKMTYECRSPMCVGREPKICQIEIPYACKLLFQELMAMCIQARIF 188
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BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A453LQH3_AEGTS (DNA-directed RNA polymerase n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453LQH3_AEGTS)

HSP 1 Score: 287 bits (734), Expect = 1.030e-94
Identity = 135/183 (73.77%), Postives = 152/183 (83.06%), Query Frame = 1 
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRM 549
            KV    G EGDATPFTDVTV N+S  LHK G+Q  G E MY+GHTGR L   +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR RDGGLR GEMERDC+I+HG A FL++RLF  SDAYRVHVC+KCGLIA+ANL+K SFECRGCK K+D+ Q+H+PYACKLLFQELMAM IAPRM
Sbjct:  133 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 315
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BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: Q0DQ04_ORYSJ (DNA-directed RNA polymerase (Fragment) n=7 Tax=Mesangiospermae TaxID=1437183 RepID=Q0DQ04_ORYSJ)

HSP 1 Score: 287 bits (734), Expect = 3.650e-94
Identity = 135/183 (73.77%), Postives = 152/183 (83.06%), Query Frame = 1 
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRM 549
            KV    G EGDATPFTDVTV N+S  LHK G+Q  G E MY+GHTGR L   +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR RDGGLR GEMERDC+I+HG A FL++RLF  SDAYRVHVC+KCGLIA+ANL+K SFECRGCK K+D+ Q+H+PYACKLLFQELMAM IAPRM
Sbjct:  172 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 354
[Close]
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: K3XBN8_GLOUD (DNA-directed RNA polymerase subunit beta n=28 Tax=Oomycota TaxID=4762 RepID=K3XBN8_GLOUD)

HSP 1 Score: 305 bits (781), Expect = 9.390e-94
Identity = 141/184 (76.63%), Postives = 162/184 (88.04%), Query Frame = 1 
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 552
            KV   TG EGDATPFTDVTV  ++ TLH +G+QKHGNEV+YSGHTGR L  ++F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQPMEGR R+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVCD CG+IA+ANLRKM+FECR C+ K+ +SQ+H+PY+CKLLFQELM+M IAPR+F
Sbjct: 1004 KVSSQTGDEGDATPFTDVTVQAIADTLHNLGYQKHGNEVLYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYSCKLLFQELMSMSIAPRLF 1187
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNN2_9PHAE1.520e-125100.00DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
D7FHZ3_ECTSI1.030e-120100.00DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA8.440e-10785.87DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3Y3D8_HETAK3.420e-10579.89DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A7C9ANR9_OPUST5.280e-9772.83DNA-directed RNA polymerase n=3 Tax=Opuntia strept... [more]
A0A662XQG4_9STRA3.640e-9576.63DNA-directed RNA polymerase subunit beta n=2 Tax=N... [more]
A0A7S0AH25_9STRA6.560e-9570.59DNA-directed RNA polymerase n=1 Tax=Minutocellus p... [more]
A0A453LQH3_AEGTS1.030e-9473.77DNA-directed RNA polymerase n=4 Tax=Triticinae Tax... [more]
Q0DQ04_ORYSJ3.650e-9473.77DNA-directed RNA polymerase (Fragment) n=7 Tax=Mes... [more]
K3XBN8_GLOUD9.390e-9476.63DNA-directed RNA polymerase subunit beta n=28 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1370contigL-elsbetiae_contig1370:23685..25698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.6
Seed ortholog evalue4.3e-103
Seed eggNOG ortholog2880.D7FHZ3
Preferred nameRPB2
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons3
Model size552
Cds size552
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1370.2825.1prot_L-elsbetiae_contig1370.2825.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1370 23685..25698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.800632-CDS-L-elsbetiae_contig1370:23684..237561622815534.800632-CDS-L-elsbetiae_contig1370:23684..23756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1370 23685..23756 -
1691682945.524423-CDS-L-elsbetiae_contig1370:23684..237561691682945.524423-CDS-L-elsbetiae_contig1370:23684..23756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1370 23685..23756 -
1622815534.8194325-CDS-L-elsbetiae_contig1370:24594..249181622815534.8194325-CDS-L-elsbetiae_contig1370:24594..24918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1370 24595..24918 -
1691682945.5355792-CDS-L-elsbetiae_contig1370:24594..249181691682945.5355792-CDS-L-elsbetiae_contig1370:24594..24918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1370 24595..24918 -
1622815534.8354478-CDS-L-elsbetiae_contig1370:25542..256981622815534.8354478-CDS-L-elsbetiae_contig1370:25542..25698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1370 25543..25698 -
1691682945.546761-CDS-L-elsbetiae_contig1370:25542..256981691682945.546761-CDS-L-elsbetiae_contig1370:25542..25698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1370 25543..25698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1370.2825.1

>prot_L-elsbetiae_contig1370.2825.1 ID=prot_L-elsbetiae_contig1370.2825.1|Name=mRNA_L-elsbetiae_contig1370.2825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLN
TKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGE
MERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECR
GCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF
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mRNA from alignment at L-elsbetiae_contig1370:23685..25698-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1370.2825.1 ID=mRNA_L-elsbetiae_contig1370.2825.1|Name=mRNA_L-elsbetiae_contig1370.2825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2014bp|location=Sequence derived from alignment at L-elsbetiae_contig1370:23685..25698- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGGGCGTGCTGACGGGAACGGAGGGAGACGCGACGCCCTTCACGGA
CGTGACCGTGGCCAACGTGAGCAGCACCCTGCACAAGATCGGCTTCCAGA
AGCACGGGAACGAAGTCATGTACAGCGGCCACACCGGCCGCATGCTCAAC
ACGAAGGTGGGTCGCGTCGAGCCACGTCGCGTTGAGTCACGTCGAGTCGA
GTCACGTCGAGTCGAGTCCAGTCGAGTCCAGTCGAGTCCAGTCGTACCGC
GTTCAGGAATGCCGGGGGCGCTGCGGATGAGCAGACGCCTTTGCTCTCCG
ACGTTTCGTTATGGTCCGAAGATCTCTCTCTTCCCCCCTCTCCCCTCTCT
CTCTATATATTTTTTTGCGCGCGGCGGCGGGGATGAAGCAGGGAGGGGGC
TTGTGCCCGACGATCGTGGTTGTTGCAGCTTTTGGCAATAATCTTTGACG
CCTCGATTTCGCATGCATTTGGTGGCGCGTCCGTGTTGGTTTTTCCGGCG
GACAGACAGCAGTAGTGTTTTGAGATATTCAAAGCGTGCTGTTTGATCGG
ATCCCGCGCTTTGCTGGTGTGCCTGTACATTGTATGCAGTCTGATCGTGT
CGGGGAAAACGTATGTGATGTATAAGGTGCACGAGAGATTAGGGTCGTTC
CTCCTTCAAGATATCGACAACGACACCACTCCGAAGATCCAGCGAACCAA
TCCTCTCTCTCTCTGCCCACCCCCCCGTCCCGTCACGTCATCCCCGTACC
CCCCCCTCTCCTCGTCCCGCCACCCCAAAGGTGTTCCTGGGGCCGACGTT
CTACCAGCGCCTGAAGCACTTGGTGGACGACAAGATCCACAGCCGGAGCA
GGGGCCCCGTGATGAACCTCACGAGGCAGCCCATGGAGGGGCGAGGGCGG
GACGGCGGGCTGCGCATGGGGGAGATGGAGCGGGACTGCCTCATCAGCCA
CGGCTGCGCCAACTTCCTGCGGGACCGGCTCTTCATCAACTCGGACGCGT
ACCGGGTGCACGTGTGCGACAAGTGCGGGCTGATCGCGGTCGCGAACCTT
CGGAAGATGAGCTTCGAGTGCCGGGGGTGCAAGGGAAAGTCGGATGTCTC
GCAGGTGAGGACTTATATATATACTTCTATATGTTTTATTTATTTTTTGT
GTCTCCATTATTGGATTATTCGTCGCCTGCCCCACTGGCCCCGTTCCTGC
ACTACGACTGGCTAGACGACCCAACCGGGGTCACACAGGAGAGACAACAC
CACCGATCGTTTTTCATTACGTCTAAATATGTACCTGGTAACAGGCAGGT
AAGAGAGGGGAAATACCAGCCAAATATCTAATTGAGCAATAGGTATCTTT
GTTAAATGTAATATCCCGCACATAAAACATTTATTAGACTGATGAATACC
CATAGAAATTTCGTAAGAAACCATTTGAGCGGCAGAACGTGAAGCACCTA
AGAAATCAAGACGCCATATGTCTTCCACACGTCAGCTCCAGCTCTTGTAC
GTATCTGCACCATAAAACGCCCCCAAAAATGTGCAATTTAATTAAAAGAA
GCCACCTTTTCAAGGCCGGCCGCCCACTCAAGAAGAGAGGTTTTTGCATA
CCTCAGAGAGCTTTTCCGGCACTGGGGGGCCTGAGAAGAAGATCGCCCAT
AGTGGAAAGTCGAGCGTGTGTGTGTGTGTGTGCGTGACAGCAGTAACGGC
AGTTGAGTCCTGGATGTGATGCGCAAGCTGTCTCTTAGATTCTGCGTTGT
TGTTGCTGTTGTCTCTCACAGTAGCTCTCTAGTCCAAAACATCCTTGGGG
GCCCGTGGTCACAAAGCAAGGCGTGTGCATCCGCGGTGCGCGCGTGCGAG
CAGTCGTTTTGCAGCCGAGGGCTCGACAGCGGACCTAAATGTTTTACTCC
GCCTGCTGCTGTGTACCCCCTCTTCGTGCGAACAACCAACAGATCCACGT
GCCGTACGCGTGCAAGCTCCTGTTCCAAGAGCTGATGGCCATGTGTATAG
CACCGCGCATGTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1370:23685..25698-

>mRNA_L-elsbetiae_contig1370.2825.1 ID=mRNA_L-elsbetiae_contig1370.2825.1|Name=mRNA_L-elsbetiae_contig1370.2825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig1370:23685..25698- (Laminarionema elsbetiae ELsaHSoW15)
AAGGTGGGCGTGCTGACGGGAACGGAGGGAGACGCGACGCCCTTCACGGA
CGTGACCGTGGCCAACGTGAGCAGCACCCTGCACAAGATCGGCTTCCAGA
AGCACGGGAACGAAGTCATGTACAGCGGCCACACCGGCCGCATGCTCAAC
ACGAAGAAGGTGGGCGTGCTGACGGGAACGGAGGGAGACGCGACGCCCTT
CACGGACGTGACCGTGGCCAACGTGAGCAGCACCCTGCACAAGATCGGCT
TCCAGAAGCACGGGAACGAAGTCATGTACAGCGGCCACACCGGCCGCATG
CTCAACACGAAGGTGTTCCTGGGGCCGACGTTCTACCAGCGCCTGAAGCA
CTTGGTGGACGACAAGATCCACAGCCGGAGCAGGGGCCCCGTGATGAACC
TCACGAGGCAGCCCATGGAGGGGCGAGGGCGGGACGGCGGGCTGCGCATG
GGGGAGATGGAGCGGGACTGCCTCATCAGCCACGGCTGCGCCAACTTCCT
GCGGGACCGGCTCTTCATCAACTCGGACGCGTACCGGGTGCACGTGTGCG
ACAAGTGCGGGCTGATCGCGGTCGCGAACCTTCGGAAGATGAGCTTCGAG
TGCCGGGGGTGCAAGGGAAAGTCGGATGTCTCGCAGGTGTTCCTGGGGCC
GACGTTCTACCAGCGCCTGAAGCACTTGGTGGACGACAAGATCCACAGCC
GGAGCAGGGGCCCCGTGATGAACCTCACGAGGCAGCCCATGGAGGGGCGA
GGGCGGGACGGCGGGCTGCGCATGGGGGAGATGGAGCGGGACTGCCTCAT
CAGCCACGGCTGCGCCAACTTCCTGCGGGACCGGCTCTTCATCAACTCGG
ACGCGTACCGGGTGCACGTGTGCGACAAGTGCGGGCTGATCGCGGTCGCG
AACCTTCGGAAGATGAGCTTCGAGTGCCGGGGGTGCAAGGGAAAGTCGGA
TGTCTCGCAGATCCACGTGCCGTACGCGTGCAAGCTCCTGTTCCAAGAGC
TGATGGCCATGTGTATAGCACCGCGCATGTTCATCCACGTGCCGTACGCG
TGCAAGCTCCTGTTCCAAGAGCTGATGGCCATGTGTATAGCACCGCGCAT
GTTC
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