prot_L-elsbetiae_contig1370.2825.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1370.2825.1
Unique Nameprot_L-elsbetiae_contig1370.2825.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length184
Homology
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 376 bits (966), Expect = 1.520e-125
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    2 VGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 184
            VGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF
Sbjct:  459 VGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 641          
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 1.030e-120
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 184
            KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF
Sbjct: 1082 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 1265          
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 340 bits (872), Expect = 8.440e-107
Identity = 158/184 (85.87%), Postives = 174/184 (94.57%), Query Frame = 0
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 184
            K G+L GTEGDATPFTDVTVA++SS LH++G+QKHGNE MYSGHTGRML +KVFLGPTFYQRLKHLVDDKIHSRSRGPV  LTRQPMEGR RDGGLRMGEMERDCLISHGCANFLRDRLF+NSDAYRVHVC++CGLIA+ANLRK SFECRGC+ K+D+SQ+H+PYACKLLFQELMAMCIAPRMF
Sbjct:  996 KFGLLVGTEGDATPFTDVTVADISSRLHQMGYQKHGNETMYSGHTGRMLTSKVFLGPTFYQRLKHLVDDKIHSRSRGPVAMLTRQPMEGRARDGGLRMGEMERDCLISHGCANFLRDRLFLNSDAYRVHVCNRCGLIAIANLRKQSFECRGCRNKTDISQVHIPYACKLLFQELMAMCIAPRMF 1179          
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A7S3Y3D8_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3D8_HETAK)

HSP 1 Score: 318 bits (816), Expect = 3.420e-105
Identity = 147/184 (79.89%), Postives = 166/184 (90.22%), Query Frame = 0
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 184
            KV   TGTEGDATPFTDVTV N+S TLH++G+Q+HGNE M+SGHTGRML  KVFLGPTFYQRLKHLVDDKIH+RSRGPV  LTRQPMEGR +DGGLRMGEMERDCL++HG ANFLRDR F NSDAYR HVC+ CGL+A+ANLRKM FECRGC+ ++DV+QIH+PYACKLLFQELMAMCIAPR+F
Sbjct:  275 KVTSQTGTEGDATPFTDVTVENISDTLHRLGYQRHGNETMFSGHTGRMLKAKVFLGPTFYQRLKHLVDDKIHARSRGPVAMLTRQPMEGRAKDGGLRMGEMERDCLVAHGVANFLRDRFFANSDAYRAHVCNTCGLLAIANLRKMVFECRGCRNRTDVAQIHIPYACKLLFQELMAMCIAPRIF 458          
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A7C9ANR9_OPUST (DNA-directed RNA polymerase n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ANR9_OPUST)

HSP 1 Score: 289 bits (739), Expect = 5.280e-97
Identity = 134/184 (72.83%), Postives = 154/184 (83.70%), Query Frame = 0
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 184
            KV    G EGDATPFTDVTV N+S  LHK G+Q  G E MY+GHTGR L   +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR RDGGLR GEMERDC+I+HG A+FL++RLF  SDAYRVHVC++CGLIA+ANL+K SFECRGCK K+D+ Q+H+PYACKLLFQELM+M IAPRMF
Sbjct:   23 KVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMF 206          
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A662XQG4_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG4_9STRA)

HSP 1 Score: 305 bits (781), Expect = 3.640e-95
Identity = 141/184 (76.63%), Postives = 162/184 (88.04%), Query Frame = 0
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 184
            KV   TG EGDATPFTDVTV  ++ TLH +G+QKHGNEV+YSGHTGR L  ++F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQPMEGR R+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVCD CG+IA+ANLRKM+FECR C+ K+ +SQ+H+PY+CKLLFQELM+M IAPR+F
Sbjct:  753 KVSSQTGDEGDATPFTDVTVQAIADTLHNLGYQKHGNEVLYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYSCKLLFQELMSMSIAPRLF 936          
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A7S0AH25_9STRA (DNA-directed RNA polymerase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH25_9STRA)

HSP 1 Score: 283 bits (723), Expect = 6.560e-95
Identity = 132/187 (70.59%), Postives = 156/187 (83.42%), Query Frame = 0
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRG--CKGKSD-VSQIHVPYACKLLFQELMAMCIAPRMF 184
            KV V  G EGDATPFTDVTV ++S  LH +G+Q+HGNE +Y GHTGR LN +VF+GPTFYQRLKHLVDDK+HSR+RGPV  LTRQP+EGR RDGGLRMGEMERDCLI+HGCANFLRDR F NSD YR+H+C++CG+ A ANL+KM++ECR   C G+   + QI +PYACKLLFQELMAMCI  R+F
Sbjct:    2 KVVVFQGCEGDATPFTDVTVEDISMRLHAMGYQRHGNEALYQGHTGRPLNARVFIGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCANFLRDRFFCNSDQYRIHICERCGMTAQANLKKMTYECRSPMCVGREPKICQIEIPYACKLLFQELMAMCIQARIF 188          
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: A0A453LQH3_AEGTS (DNA-directed RNA polymerase n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453LQH3_AEGTS)

HSP 1 Score: 287 bits (734), Expect = 1.030e-94
Identity = 135/183 (73.77%), Postives = 152/183 (83.06%), Query Frame = 0
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRM 183
            KV    G EGDATPFTDVTV N+S  LHK G+Q  G E MY+GHTGR L   +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR RDGGLR GEMERDC+I+HG A FL++RLF  SDAYRVHVC+KCGLIA+ANL+K SFECRGCK K+D+ Q+H+PYACKLLFQELMAM IAPRM
Sbjct:  133 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 315          
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: Q0DQ04_ORYSJ (DNA-directed RNA polymerase (Fragment) n=7 Tax=Mesangiospermae TaxID=1437183 RepID=Q0DQ04_ORYSJ)

HSP 1 Score: 287 bits (734), Expect = 3.650e-94
Identity = 135/183 (73.77%), Postives = 152/183 (83.06%), Query Frame = 0
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRM 183
            KV    G EGDATPFTDVTV N+S  LHK G+Q  G E MY+GHTGR L   +FLGPT+YQRLKH+VDDKIHSR RGPV  LTRQP EGR RDGGLR GEMERDC+I+HG A FL++RLF  SDAYRVHVC+KCGLIA+ANL+K SFECRGCK K+D+ Q+H+PYACKLLFQELMAM IAPRM
Sbjct:  172 KVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 354          
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Match: K3XBN8_GLOUD (DNA-directed RNA polymerase subunit beta n=28 Tax=Oomycota TaxID=4762 RepID=K3XBN8_GLOUD)

HSP 1 Score: 305 bits (781), Expect = 9.390e-94
Identity = 141/184 (76.63%), Postives = 162/184 (88.04%), Query Frame = 0
Query:    1 KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF 184
            KV   TG EGDATPFTDVTV  ++ TLH +G+QKHGNEV+YSGHTGR L  ++F+GPTFYQRLKH+VDDKIHSRSRGPV  LTRQPMEGR R+GGLRMGEMERDCLISHG ANFL DRLF NSDAYRVHVCD CG+IA+ANLRKM+FECR C+ K+ +SQ+H+PY+CKLLFQELM+M IAPR+F
Sbjct: 1004 KVSSQTGDEGDATPFTDVTVQAIADTLHNLGYQKHGNEVLYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYSCKLLFQELMSMSIAPRLF 1187          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1370.2825.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNN2_9PHAE1.520e-125100.00DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
D7FHZ3_ECTSI1.030e-120100.00DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA8.440e-10785.87DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S3Y3D8_HETAK3.420e-10579.89DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A7C9ANR9_OPUST5.280e-9772.83DNA-directed RNA polymerase n=3 Tax=Opuntia strept... [more]
A0A662XQG4_9STRA3.640e-9576.63DNA-directed RNA polymerase subunit beta n=2 Tax=N... [more]
A0A7S0AH25_9STRA6.560e-9570.59DNA-directed RNA polymerase n=1 Tax=Minutocellus p... [more]
A0A453LQH3_AEGTS1.030e-9473.77DNA-directed RNA polymerase n=4 Tax=Triticinae Tax... [more]
Q0DQ04_ORYSJ3.650e-9473.77DNA-directed RNA polymerase (Fragment) n=7 Tax=Mes... [more]
K3XBN8_GLOUD9.390e-9476.63DNA-directed RNA polymerase subunit beta n=28 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 94..183
e-value: 2.1E-34
score: 117.8
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 1..91
e-value: 1.3E-29
score: 103.5
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 1..78
e-value: 2.5E-30
score: 107.9
NoneNo IPR availableGENE3D3.90.1800.10coord: 79..184
e-value: 1.6E-45
score: 155.3
NoneNo IPR availablePANTHERPTHR20856:SF7DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2coord: 1..183
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..183
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1370contigL-elsbetiae_contig1370:23685..25698 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1370.2825.1mRNA_L-elsbetiae_contig1370.2825.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1370 23685..25698 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1370.2825.1 ID=prot_L-elsbetiae_contig1370.2825.1|Name=mRNA_L-elsbetiae_contig1370.2825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
KVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLN
TKVFLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGE
MERDCLISHGCANFLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECR
GCKGKSDVSQIHVPYACKLLFQELMAMCIAPRMF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007641RNA_pol_Rpb2_7
IPR007120DNA-dir_RNAP_su2_dom
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR015712DNA-dir_RNA_pol_su2