mRNA_L-elsbetiae_contig137.2817.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig137.2817.1
Unique NamemRNA_L-elsbetiae_contig137.2817.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: A0A6H5KEX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX8_9PHAE)

HSP 1 Score: 451 bits (1159), Expect = 1.760e-151
Identity = 237/314 (75.48%), Postives = 259/314 (82.48%), Query Frame = 3
Query:  231 MGSRLAFAMGA---NSFPVHRHTPMHAKRLLTMSAPPEVLCLDCTGTIMRIKGSMPRLYLGVLEDRLGVPEGGLPDKVSESDLLDSFKTSLKQRSKELPCFGAGVMSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGS--------GGIFDDVFGRLFHDVFTSTTAWELVPGAEEVLEDLRAWCQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGG-DGGGRGVLVGDTFRTDVLGARSVGWDAVLITRGKDPAGDDEREMDH-VRVDNLRAVPAALG 1133
            +GSRLA A  A   +  PV    P   +RLLTM A P+V+CLDCTGTIMRIKGSMPRLYLGVLEDRLGV EGGLPDKVSE DLL+SF+ SLK+RSKELPCFG GVMSSEDWW EVV ATFRGAGVSD+TLGI +  +  GG         G +FDDVF RLFHDVFTSTTAWELVPGAEEVLEDLRAW  E GGP+ALGAVSNFDERLHPLLKNLGVY+SFDFVLTSRECGSEKP P +F EA K AG+SGG DG GRGV+VGDTFRTDVLGARSVGWDAVLITRGKDPA ++E++  H  RVD+LR VPAALG
Sbjct:    2 LGSRLASASSAVKWSHLPVITPPPS-TRRLLTMRAGPDVVCLDCTGTIMRIKGSMPRLYLGVLEDRLGVSEGGLPDKVSEQDLLNSFRASLKRRSKELPCFGTGVMSSEDWWAEVVMATFRGAGVSDETLGISQEGDRGGGXXXXXXXXXGRVFDDVFDRLFHDVFTSTTAWELVPGAEEVLEDLRAWVGEAGGPRALGAVSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFHEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLITRGKDPATEEEQDTTHYARVDDLRGVPAALG 314          
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: A0A8J5XU42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU42_DIALT)

HSP 1 Score: 145 bits (366), Expect = 7.020e-35
Identity = 102/287 (35.54%), Postives = 140/287 (48.78%), Query Frame = 3
Query:  330 PEVLCLDCTGTIMRIKGSMPRLYLGVLEDRLGVPEGGLPDKVSESDLLD----------SFKTSLKQRSKELPCFGAGVMSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRLFHDVFTSTTAWELVPGAEEVLEDLRAW-CQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGGRG-VLVGDTFRTDVLGARSVGWDAVLITRGKDPAGD-------DEREMDHVRVDNLRAVPAALG 1133
            P ++  D TGT+MR++  +  +Y   L   L   +      +S ++L            +F  +   +    PCFGAG +SS DWW  VVR  F GAGVS+  +  +               +F  L+   F ST  WEL+  +  V++ L  W  Q   G   +G +SNFD+RL  LL +LG+   FDFVLTSRE G EKP   IF  A++ AG +  D   R  V VGDTF TDVLGA   GW AV +    D  G+          E +H R+ +L  VP  +G
Sbjct:   10 PRLVTFDATGTLMRVQRPVGAIYRDALISSLSASKLARTADLSAAELAACNVDPVAIGRAFGRAYAAQCAAHPCFGAGSLSSRDWWSSVVREAFVGAGVSEAVVRAE------------MPLLFPTLYES-FASTATWELLDASAGVVQQLARWRAQLPPGELTIGVISNFDDRLPALLNSLGLGRYFDFVLTSREHGDEKPCRSIFERASERAGLATVDVSPRTCVHVGDTFGTDVLGASRAGWRAVFVA-SDDALGELMPEAFVAMAETEHERIPSLGFVPRIVG 282          
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: A0A7S2PCP1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCP1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.330e-33
Identity = 90/239 (37.66%), Postives = 132/239 (55.23%), Query Frame = 3
Query:  330 PEVLCLDCTGTIMRIKGSMPRLYLGVLEDRLGVPEGGLPDKVSESDLLDSFKTSLKQRSKELPCFGAGV-MSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRLFHDVFTSTTAWELVPGAEEVLEDLRAWCQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGGRGVLVGDTFRTDVLGARSVGWDAVLI 1043
            P+++  D T T++++K  +   Y  +L +        LP   + +    +F  +  + +++ PCFG G+ M+S +WW E  + T+      D   G+ + R D    G + D V   L++ VF ST AWEL PG  + L   + W +E+GGPQ L  +SNFDERLH +L  +GV D+FDFVLTSRE GSEKPN   F  A   AG +        + VGD F +DV+GA + GW +V I
Sbjct:   89 PQLITFDATDTLIQLKSEVGMTYRLILHEATRF-RSRLP---TPAVFTSAFNQAFTETNEKYPCFGCGLGMTSREWWAECTKRTYALVEHIDYERGLRD-RMD----GPLGDAVAEVLYNQVFASTEAWELKPGVLDALSRFKMW-REEGGPQ-LAVLSNFDERLHSILDQVGVADAFDFVLTSREIGSEKPNRSAFEVAMSRAGVADPS---LCMHVGDGFDSDVVGASNAGWHSVWI 313          
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: A0A7S2STH1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STH1_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.890e-32
Identity = 93/243 (38.27%), Postives = 122/243 (50.21%), Query Frame = 3
Query:  330 PEVLCLDCTGTIMRIKGSMPRLYLGVLEDRLGVPEGGLPDKVSESDLLDS-FKTSLKQRSKELPCFGAGV-MSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRLFHDVFTSTTAWELVPGAEEVLE---DLRAWCQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGGRGVLVGDTFRTDVLGARSVGWDAVLI 1043
            P V+  D TGT+M++   +   Y   L    G+       ++   D  D+ FK   K +S+E PCFG G  M S DWW  VVR T+   GV +K L              +  ++F  L+ +VF  +  WEL   A  VL+   +L+    ED  P  LG +SNFDERLH LL NLG+   FD VLTS+EC  EKPN  IF  A    G        R V +GDTF  DV GA   GW+A+ +
Sbjct:  101 PRVVTFDATGTLMQLTEPVGMHYREALLQASGL-------RLPSPDHFDAAFKEVYKAQSEEFPCFGCGAAMPSRDWWYPVVRDTYLKTGVPEKILDP------------LLPEIFDSLYDNVFAGSEGWELNEQAIYVLDTLIELKESRAEDD-PLYLGVISNFDERLHKLLDNLGIAHYFDIVLTSKECCVEKPNSPIFDMALSRLGIYDRS---RAVHIGDTFDKDVAGAARAGWNAIFV 320          
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: A0A7S2G2K6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2K6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.390e-32
Identity = 87/247 (35.22%), Postives = 128/247 (51.82%), Query Frame = 3
Query:  330 PEVLCLDCTGTIMRIKGSMPRLYLGVLEDRLGVPEGGLPDKVSESDLL-DSFKTSLKQRSKELPCFGAG-VMSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRLFHDVFTSTTAWELVPGAEEVLEDLRAWCQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGGRGVLVGDTFRTDVLGARSVGWDAVLITRGKDPA 1064
            P+++  D TGT++++   +   Y  VL    G+       ++   D+  D+FK     + +  PCFG    +S++DWW  VVR T+   GV    +              +F  +F  L+H+VFT T  WEL      VL+ L+ W +   GP+ LG +SNFDERL  LL+ LG+ D FD ++TS+ECG EKP   IF  A    G    D     V VG+ + TDV GA + GW+A+ +   K+PA
Sbjct:   91 PQLITFDATGTLIQLAEPVGMHYRQVLMKHTGI-------RLPRPDIFTDAFKEVYDAKCQASPCFGCSDSISAQDWWASVVRDTYTKVGVPSDIIDP------------LFPLLFDELYHEVFTGTDGWELNADTMMVLDKLKEWQETGDGPR-LGVISNFDERLPKLLEALGIADYFDIIITSKECGMEKPCRQIFDIALTRLGIYERDAA---VHVGNDYDTDVKGATAAGWNALYV---KEPA 311          
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: A0A7R9U3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3B9_9STRA)

HSP 1 Score: 126 bits (316), Expect = 6.980e-27
Identity = 91/256 (35.55%), Postives = 130/256 (50.78%), Query Frame = 3
Query:  330 PEVLCLDCTGTIMRIKGSMPRLYLGVLEDRLGVPEGGLPDKVSESDLLDSFKTSLKQRSKELPCFGAGV-MSSEDWWEEVVRAT----FRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRLFHDVFTSTTA-------WELVPGAEEVLEDLRAWCQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGG----RGVL-VGDTFRTDVLGARSVGWDAVLIT 1046
            P+++  D TGT+M+++  +  +Y   L +         PD  S +     FK +   + K +PCFG G  ++S DWW  V++ T    F   GV+D+ +    G           ++V   LF D++ +  A       WEL PG E VL++LR+   E  G   LG +SNFD+RL  +L++LG+   FDFVLTSRE G EKP+  +F  A    G S  DG G    R  L  GDT  TDV GA   GW +  I+
Sbjct:  278 PKLITFDATGTLMQLRSHIGVIYRDTLLEHATTLRLPRPDVFSIA-----FKEAYASQCKAMPCFGCGSGIASFDWWRPVMQGTYDSVFSSFGVTDEEVAEAGGMESK-------EEVMEMLFQDLYFNIFAKGPPEGMWELRPGVEAVLQNLRS--AESCGGLRLGVLSNFDDRLPGILESLGIAKYFDFVLTSREAGQEKPSQVMFDLARNALGLS-ADGSGPIETRECLHAGDTLGTDVRGALDAGWQSAFIS 518          
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: A0A2P6N2V2_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2V2_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 5.630e-24
Identity = 86/269 (31.97%), Postives = 131/269 (48.70%), Query Frame = 3
Query:  339 LCLDCTGTIMRIKGSMPRLYLGVLEDRLGV-----------------PEGGLPDKVS---ESDLLDSFKTSLKQRSKELPCFGA-GVMSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRLFHDVFTSTTAWELVPGAEEVLEDLRAWCQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGGRGVLVGDTFRTDVLGARSVGWDAVLITRGKDPAGDDERE 1082
            L  D  GT+  I+G + R Y      R GV                 P  G   K +     +L DSF  + KQ   + P FG+   + S+ WW+EVV  T+RGA   D     +E    +  S  ++           F+S   ++L P  + VL D+R          ++G ++N DER+H +L++LG++  FDFVL SRE G  KP+P I+ EA +L+           + VGD +  D LGA+ +G +A+L+TRG+D   ++ERE
Sbjct:    9 LTFDGMGTLFEIRGGVGRFYAREAR-RHGVALRTEMSHKPERMFFKNPYDGTSTKQNIEAPDELRDSFYRAYKQADAKWPNFGSENNVESKQWWKEVVYNTYRGA---DYLTSKEEEETLSKMSDSLYSQ---------FSSVEGYKLFPETKAVLADVRERVD------SIGLITNTDERIHQVLESLGIHHLFDFVLCSREFGKRKPDPSIYTEACRLSKHHPSQV----MHVGDHYEKDFLGAKGIGMEALLVTRGQDM--EEERE 252          
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: UPI001EE526F1 (haloacid dehalogenase-like hydrolase domain-containing protein 3 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE526F1)

HSP 1 Score: 110 bits (275), Expect = 2.600e-23
Identity = 80/243 (32.92%), Postives = 121/243 (49.79%), Query Frame = 3
Query:  336 VLCLDCTGTIMRIKGSMPRLYLGVLEDRLGVPEGGLPDKVSESDLLDSFKTSLKQRSKELPCFGAGV-MSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRLFHDVFTSTTAWELVPGAEEVLEDLRAWCQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGGRGVLVGDTFRTDVLGARSVGWDAVLITRGKDP 1061
            ++ LD T T+++I GS    Y  V         G    K   SD+  SFK   +Q S+  P FG  V MSS  WW ++V+  F+    ++    +    N +     I + ++    H  F++  AWE++PGAE +L+ L+A    DG    +GA+SNFD RL  +L  L +   FDFV  S + G EKP+  IF  A  L+     +     V +GD++  D LGA +VG    L+ +G +P
Sbjct:   20 LVTLDVTNTLLKITGSPGHQYAAVA--------GIYGVKAKVSDINTSFKYRYRQYSERYPNFGTAVGMSSYKWWTDLVKDCFKSVADANVNSQVLPATNQDETLTQIANHLY---LH--FSTAKAWEILPGAEALLQSLKA----DG--VMIGAISNFDGRLEKILSCLALRHYFDFVTPSAKVGYEKPDRRIFEHALALSKIPASES----VHIGDSYEKDYLGAVNVGMTGYLVHKGSEP 239          
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: A0A8C4PXL1_EPTBU (Haloacid dehalogenase-like hydrolase domain-containing protein 3 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4PXL1_EPTBU)

HSP 1 Score: 108 bits (270), Expect = 7.500e-23
Identity = 84/267 (31.46%), Postives = 122/267 (45.69%), Query Frame = 3
Query:  348 DCTGTIMRIKGSMPRLYLGVLEDRLGVPEGGLPDKVSESDLLDSFKTSLKQRSKELPCFG---AGVMSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRLFHDVFTSTTAWELVPGAEEVLEDLRAWCQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGGRGVLVGDTFRTDVLGARSVGWDAVLITRGKDPAGDDEREMDHVRVDNLRAVPAALGIV 1139
            D TGT++R++GS+   Y        G+  G    +V+   L  +F+ +   +S+  PC+G   AG   +  WW  VV+ TF   GV D  L +                +   L+H++      WE+       L    +WC+  G    LG +SNFD+RL+ +L  +G+   FDFVLTS E G++KP P +F  A K  G   G      V +GD   TD LGA S G  A L+ R K           H  +D+L  +P  L  V
Sbjct:   12 DATGTLLRVRGSVGEQYKAA-----GLLFGLASPRVTS--LNAAFREAYAHQSRLKPCYGSTCAGKSGANRWWASVVQETFNRCGVRDPPLIM---------------KIADYLYHEM-KRPDRWEVFGDVHPTL----SWCKTQGF--RLGVLSNFDKRLNDILSGVGLRSYFDFVLTSDEMGTQKPQPEVFHLALKHTGVQAGQA----VHIGDDPVTDYLGATSSGMAAFLLKRNKAAELKSILIPPHRILDSLDDLPPLLKAV 245          
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Match: A0A8D8W937_9HEMI (Rhythmically expressed gene 2 protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8W937_9HEMI)

HSP 1 Score: 108 bits (270), Expect = 8.400e-23
Identity = 82/261 (31.42%), Postives = 127/261 (48.66%), Query Frame = 3
Query:  318 MSAPPEVLCLDCTGTIMRIKGSMPRLYLGVLEDRLGVPEGGLPDKVSESDLLDSFKTSLKQRSKELPCFGAGVMSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRLFHDV---FTSTTAWELVPGAEEVLEDLRAWCQEDGGPQALGAVSNFDERLHPLLKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGGRGVLVGDTFRTDVLGARSVGWDAVLITR--GKDPAGDDEREM 1085
            MS   +++  D TGT++R + +    Y+       G   G +   ++ +++ +SF    K   +  P FG+G +  + WW  VV + F             E  N   G G + +    + F+D+   ++  T W+L  GA E+LE L +          LG VSNFD RLH LLK + +Y  F FV+TS E G  KP+P IF  A  LA +S  D     + +GD F  D   A  VGW+A+LI+   GK+ + +D  ++
Sbjct:    1 MSCRFKLITFDVTGTLLRFRRTAGEQYV-----ETGKKFGHV---LNANEVQNSFVKHYKVYDRAYPNFGSGSIGWQQWWRNVVSSCFI------------ETYN---GPGQLSESDIDKFFNDLIKSYSDNTGWKLAEGATELLEMLHS------RNIMLGVVSNFDARLHNLLKEMKLYHYFKFVITSYESGLVKPDPKIFKLAESLASSSPSD---IKIHIGDNFDLDYKAALDVGWNALLISHAFGKNESENDSSDL 229          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig137.2817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEX8_9PHAE1.760e-15175.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J5XU42_DIALT7.020e-3535.54Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2PCP1_9STRA3.330e-3337.66Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2STH1_9STRA2.890e-3238.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G2K6_9STRA3.390e-3235.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9U3B9_9STRA6.980e-2735.55Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2P6N2V2_9EUKA5.630e-2431.97Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
UPI001EE526F12.600e-2332.92haloacid dehalogenase-like hydrolase domain-contai... [more]
A0A8C4PXL1_EPTBU7.500e-2331.46Haloacid dehalogenase-like hydrolase domain-contai... [more]
A0A8D8W937_9HEMI8.400e-2331.42Rhythmically expressed gene 2 protein n=1 Tax=Caco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig137contigL-elsbetiae_contig137:12193..16559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score460.7
Seed ortholog evalue5.4e-127
Seed eggNOG ortholog2880.D8LT61
Preferred nameHDHD3
KEGG koko:K07025,ko:K11853
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237
EggNOG free text desc.N-acylneuraminate-9-phosphatase activity
EggNOG OGsCOG1011@1,KOG3085@2759
EC3.4.19.12
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Ec32 ortholog descriptionhaloacid dehalogenase-like hydrolase
Ec32 orthologEc-12_005370.1
Exons5
Model size2083
Cds size921
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.8182979-UTR-L-elsbetiae_contig137:12192..131241622815533.8182979-UTR-L-elsbetiae_contig137:12192..13124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig137 12193..13124 -
1691682944.9665394-UTR-L-elsbetiae_contig137:12192..131241691682944.9665394-UTR-L-elsbetiae_contig137:12192..13124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig137 12193..13124 -
1622815533.9126558-UTR-L-elsbetiae_contig137:16329..165591622815533.9126558-UTR-L-elsbetiae_contig137:16329..16559Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig137 16330..16559 -
1691682945.0242705-UTR-L-elsbetiae_contig137:16329..165591691682945.0242705-UTR-L-elsbetiae_contig137:16329..16559Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig137 16330..16559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.8304696-CDS-L-elsbetiae_contig137:13124..133951622815533.8304696-CDS-L-elsbetiae_contig137:13124..13395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 13125..13395 -
1691682944.9778955-CDS-L-elsbetiae_contig137:13124..133951691682944.9778955-CDS-L-elsbetiae_contig137:13124..13395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 13125..13395 -
1622815533.8555446-CDS-L-elsbetiae_contig137:13774..138571622815533.8555446-CDS-L-elsbetiae_contig137:13774..13857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 13775..13857 -
1691682944.9873462-CDS-L-elsbetiae_contig137:13774..138571691682944.9873462-CDS-L-elsbetiae_contig137:13774..13857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 13775..13857 -
1622815533.8702729-CDS-L-elsbetiae_contig137:14281..143531622815533.8702729-CDS-L-elsbetiae_contig137:14281..14353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 14282..14353 -
1691682944.996657-CDS-L-elsbetiae_contig137:14281..143531691682944.996657-CDS-L-elsbetiae_contig137:14281..14353Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 14282..14353 -
1622815533.882984-CDS-L-elsbetiae_contig137:15325..156591622815533.882984-CDS-L-elsbetiae_contig137:15325..15659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 15326..15659 -
1691682945.0071986-CDS-L-elsbetiae_contig137:15325..156591691682945.0071986-CDS-L-elsbetiae_contig137:15325..15659Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 15326..15659 -
1622815533.8984678-CDS-L-elsbetiae_contig137:16168..163291622815533.8984678-CDS-L-elsbetiae_contig137:16168..16329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 16169..16329 -
1691682945.0156996-CDS-L-elsbetiae_contig137:16168..163291691682945.0156996-CDS-L-elsbetiae_contig137:16168..16329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig137 16169..16329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig137.2817.1prot_L-elsbetiae_contig137.2817.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig137 13125..16329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig137.2817.1

>prot_L-elsbetiae_contig137.2817.1 ID=prot_L-elsbetiae_contig137.2817.1|Name=mRNA_L-elsbetiae_contig137.2817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
MGSRLAFAMGANSFPVHRHTPMHAKRLLTMSAPPEVLCLDCTGTIMRIKG
SMPRLYLGVLEDRLGVPEGGLPDKVSESDLLDSFKTSLKQRSKELPCFGA
GVMSSEDWWEEVVRATFRGAGVSDKTLGIDEGRNDNGGSGGIFDDVFGRL
FHDVFTSTTAWELVPGAEEVLEDLRAWCQEDGGPQALGAVSNFDERLHPL
LKNLGVYDSFDFVLTSRECGSEKPNPGIFLEAAKLAGASGGDGGGRGVLV
GDTFRTDVLGARSVGWDAVLITRGKDPAGDDEREMDHVRVDNLRAVPAAL
GIVDRR*
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mRNA from alignment at L-elsbetiae_contig137:12193..16559-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig137.2817.1 ID=mRNA_L-elsbetiae_contig137.2817.1|Name=mRNA_L-elsbetiae_contig137.2817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4367bp|location=Sequence derived from alignment at L-elsbetiae_contig137:12193..16559- (Laminarionema elsbetiae ELsaHSoW15)
GCTTCCTGGCCAGCCGCCGCACTCGCTGCACGTCCAGTTTCCACATCCCA GATTTCCACGCACTCCCAGAGTTCCAGAGACTTTCAAGCTCCAACGCTAA CGAAGGAATAGGAGCCGGAATAAAAACGCAACGAGGGGCATTTATTTCCT GTTATTTCCCGCTGTGTTGAGGGCGTGCGTGGGTGCAGCACACACCAGGG CACACACCACTGGGTAATACCTACAGGTCGATGGGTTCCCGCCTTGCGTT CGCTATGGGTGCCAACAGCTTTCCCGTTCATCGACATACCCCAATGCATG CCAAGCGACTTCTAACCATGAGCGCGCCCCCAGAAGTGTTGTGCCTAGAC TGCACGGGCACAATCATGCGAATCAAGGGTTCGATGCCAAGGTGAGGTGT GGAGACAACAGGCTGCGGTGGACTAGACAAGCGACTAGGGCGTTGCACCT TACTCGATTAATATTGTGAATAGGATCCTCTCTGACAAGTAGTGCTGCAT TTGACAATCAAAATCTGTCGCGCAAGTTGGTTTCTTCGCTACACATGAAT GCCGCGCTGGTGAACGCCGCCGCTGTAATCTAGGTACATACAACATACAT CAGCTGCATGATGCCTCCGGTTCTCGAAACCGAAAACGGGCACAAATATG CCCCTAGAGAGTGTTCACCGGGTGGTATTGAACACACCACTGCTGTACTT CATTTGCATGATGCCTTGGGTACACTACACCGTACAACCTCTTGACGCGC TGAGAACAGCAGATCGACATCCTGCACTGCGGCACGTGGAGCTGGTAAGG CTACATACTGCGTGTTAAAACGCTGATATGTAGTAAGTACATTTGTGTAT CCTCCTACGGTGTACTAACTCTGCACACACCGCGCCCCCGGCCGCGGCAG GCTCTACTTGGGCGTCCTGGAAGATCGTTTGGGCGTTCCGGAAGGCGGGC TCCCCGACAAAGTGTCCGAATCAGATCTCCTGGACTCCTTCAAGACGTCT CTCAAGCAGAGGTCGAAGGAGCTGCCGTGCTTTGGCGCTGGAGTCATGTC CTCGGAAGACTGGTGGGAGGAGGTGGTGCGGGCAACGTTCCGCGGGGCCG GGGTTTCCGACAAAACTCTCGGGATCGACGAGGGACGGAACGACAACGGC GGCAGTGGCGGAATTTTTGACGACGTGTTCGGCCGACTTTTTCACGATGT TTTCACTAGCACGACGGCGTGGGAGCTTGTGCCGGTGAGGCTATCTACTG TAGTCGGTCTTCCAATGCTGTATTATCGTTCCCGGTGCTCATGCACAAAA GGTATAGAAGTACGGAGTCGGTGGCGTAGGGCCCAGGGGGGGGGGGGGCG TCACCAGGTGTGTGAGGCTGGCTAGTATTGAGATGGGAGGCAAAACCGAA AATGATCCCTTGTGGCCTAGGTACGTTCCCCGCGTTGTATCTGTCTTGTG TACAAGATTCCCTTTTAGAAGTTTTTCATGAAAGATACAATCTAGGGGAT GAAGCAAGAGAACAGACAAAGCGTTCGATACCTGCATGCTGTTCTGCCCG ACTGCGCGCGTTTTCAACAAATTGAAATAGTTGGAACACCGGGGGAAGAA AGACGAAAACGAGCGAAACATATTGCGCCAGCTTTCGCGTGTGATTGTGT GTGTGTGCGTGTGTGTTTGCCATCATTAGAACACGCAGAAAACAGCCAGG TAAGAACAGGTAGCTGTCACGAATCTGATTGCTTAGTGACTGCTGAGGGA CGGCTGTTTGCGCGTGTGGACCGCCGTGCGACAAAACACCTGGTACACTA AAGAGTCGGACTGACTTACATCGCCACGTGCGTCGTAAGCCTGAAAAGCC TCCTGGAAAGCCTGGTTCCATTGCGCGGCTTGCAACCAACAGCCCACAGA CCCTGCACCACGGCCTTTTGGCTTTCCCCAAAGAACCATCTTGGCATGCA GCCTCCGTCCTGCTTCGCGGTTTGCGTGACAAGCCACCCCTACCCACAAT GTTTTGCGTTGTGTCTTTGTAATCGAAGCGATTTTTTTTTTCGTCGGGAT ATGCCACTTAATTACTGTACTGCTATTGCTGCTGGTGGTGGTGCTAGGAA CCGCAGATAGTCACACAACACGTACTCCCTCGTGGTACAATCCTCCTCTG CTCGTCGTTTCTACCTTGACTCTTATACTTTCTTGAACCGGGGCCTCAAC GAGCAGGGGGCGGAGGAAGTGCTTGAGGACCTCCGGGCTTGGTGCCAAGA AGACGGCGGACCGCAGGCGCTTGGCGCGGTGCGTGAGATTTTCCGTCTGG CGAACATCTTGCCAAGACAGGGCTATGCTAGGCTTATTTAATGCGTGGGA TGCTCCTTGCTGTTTATGGCTTTACGGCTGTGTCGCGCGTTGAAACATAG CGAAGTATACACACAGCAGTCCCCGCTCTGGGTACGCTCGCCAATCAGTG GCGACTGCGGAGGGACCCAGAGAATGGGAAACACGAATGCAACGTACACA GCAGGAGGAACGCCGGCTCATCTTCCTAAAGTCCGAACTGGTTGTTTCGA AAGCTCGTGTGACATCCTGCACCCTGTACCCCAAACCTGCTGGCACGAGC TCTAATTGTACAAACCTGTTGTCTGCAGCTGTGATGCAACCACAGGTTTT TGTATTGGCATAACCCCTCTCCCCTCCGTCTCTCCGCACGCCGCAAAAAA AGGTGTCAAACTTTGACGAGCGCCTCCACCCGCTCCTGAAGAACCTCGGC GTCTACGACTCCTTCGACTTCGTGCTAACTTCGAGGTAAGATCACCAATA ACAACAGGTCTACGGGGTCTCCGAGACCGCTTGTGTTGAGAAAAGGTCTG CATGCGTGCTTTTCATTAAGTCCCTCGGTGGTCTCGGTCGCGTTCGCTTT CTTGCCTTTTTATTTTTCAAAAGAAATCCGGGTGTTTGGACAACAATCCA GACAGGTCTTCTTCAGCACTAAAAACCATTGGACTCCGTTGGCACGTCGC TGCTGTGTGTGCGCGCTTGCTTTGCAGTCTCCCGAGGCCCAAGAAACTCT TCGAGCCTTCGTCGTCGTGTTGTAGTTGCCTCCAAAACAACCCGCAGTGA AATGATTAAAACATTTCTTTTACGTGGTACATGCTTCCGTTCATGCGACC GGATTCCTTCGCAGAGAATGCGGCTCGGAGAAACCGAACCCGGGCATATT TCTGGAGGCCGCCAAGCTGGCGGGCGCCAGCGGTGGAGACGGCGGGGGGA GAGGGGTGCTGGTCGGCGACACCTTCAGAACGGACGTGCTCGGCGCGAGA TCCGTCGGCTGGGATGCCGTGCTCATCACGAGGGGGAAAGACCCGGCTGG AGACGACGAGCGAGAGATGGACCATGTCCGCGTTGATAATCTGAGAGCCG TACCCGCCGCGCTGGGCATTGTTGACAGACGATGACCCGAGTTCATTTGG GGGGGGATGAAGCCTTATACGGGCCAGGCCGGTTTTTGTAAACTGCGTGT GTGTGTATTGCCACGTAGTGATTTCTGCGGGGGTAGTTGTGACATGTTAG TGTTTACAGGTGAAGCTTGCGCGAAAGGGCCGTCGATGGAGACTTGCTTG GTCGGACGCAATGGCCGCGAGTATGCGTGGAAAGCGTGTGGAATATATTA CGGTGAAGTTATACCTCCGTTGTTTGTGTGGAGCGCTCCCGGTCTGAAGA GTGTGGAGTTGTTTTTGGGGGAAGACTAAATCAAAATCAACCGTTGTTGC TCGAAACCCATCGTTGATATTTTTACGGGTGCCCTCGTCCCGGGAAAGTT GTTCGGCACGATATCTCAGTCCCCTAAAGTTTACTCTCTCCGTCCAGAGA GGAATACTCACTAGAGGGCCAGACCACCCTACATCCATATCAGACAACGT AAACGGAGCAACGAGCTATCTCCGTGCTTGATTGAAGAGCTTTGGGGACG ACAGCTGCTACTGTACGGAGAACTTTTTAAGGAAGCCGTAACATCGAAGG CTGGATGAAGTAAGGAGGCAGATTGACTTTGCCGAAGCCATATTTTGGTA CTCTTTGGTTTCTTTTGCGTGCAGGGTGAAAATACAGTGCTCCCCAACCC GGTGGCAGTGAGTATTCGAGGGGAAAAATAGAGAGAGAGACACACACACA AGCGTTGTGTTGATTGGTAGACAAACGGAGACGCGGCGCCGTTATGTTAC GGCCCCCTCTTTCTGGGTGTAGCGTCGATGACAACAGGGAGGCGGTTGCG GAAACAGAATTGTCGTCCCCGAGCTTAGTCCCGGCACGCGTGTGTTTGTT AGCCACTGCCACATGACGTGATTGCCAAATATCAAAGTATCAACATCATC GTCCCAGTCTCGTCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig137:12193..16559-

>mRNA_L-elsbetiae_contig137.2817.1 ID=mRNA_L-elsbetiae_contig137.2817.1|Name=mRNA_L-elsbetiae_contig137.2817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig137:12193..16559- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTTCCCGCCTTGCGTTCGCTATGGGTGCCAACAGCTTTCCCGTTCA
TCGACATACCCCAATGCATGCCAAGCGACTTCTAACCATGAGCGCGCCCC
CAGAAGTGTTGTGCCTAGACTGCACGGGCACAATCATGCGAATCAAGGGT
TCGATGCCAAGATGGGTTCCCGCCTTGCGTTCGCTATGGGTGCCAACAGC
TTTCCCGTTCATCGACATACCCCAATGCATGCCAAGCGACTTCTAACCAT
GAGCGCGCCCCCAGAAGTGTTGTGCCTAGACTGCACGGGCACAATCATGC
GAATCAAGGGTTCGATGCCAAGGCTCTACTTGGGCGTCCTGGAAGATCGT
TTGGGCGTTCCGGAAGGCGGGCTCCCCGACAAAGTGTCCGAATCAGATCT
CCTGGACTCCTTCAAGACGTCTCTCAAGCAGAGGTCGAAGGAGCTGCCGT
GCTTTGGCGCTGGAGTCATGTCCTCGGAAGACTGGTGGGAGGAGGTGGTG
CGGGCAACGTTCCGCGGGGCCGGGGTTTCCGACAAAACTCTCGGGATCGA
CGAGGGACGGAACGACAACGGCGGCAGTGGCGGAATTTTTGACGACGTGT
TCGGCCGACTTTTTCACGATGTTTTCACTAGCACGACGGCGTGGGAGCTT
GTGCCGGCTCTACTTGGGCGTCCTGGAAGATCGTTTGGGCGTTCCGGAAG
GCGGGCTCCCCGACAAAGTGTCCGAATCAGATCTCCTGGACTCCTTCAAG
ACGTCTCTCAAGCAGAGGTCGAAGGAGCTGCCGTGCTTTGGCGCTGGAGT
CATGTCCTCGGAAGACTGGTGGGAGGAGGTGGTGCGGGCAACGTTCCGCG
GGGCCGGGGTTTCCGACAAAACTCTCGGGATCGACGAGGGACGGAACGAC
AACGGCGGCAGTGGCGGAATTTTTGACGACGTGTTCGGCCGACTTTTTCA
CGATGTTTTCACTAGCACGACGGCGTGGGAGCTTGTGCCGGGGGCGGAGG
AAGTGCTTGAGGACCTCCGGGCTTGGTGCCAAGAAGACGGCGGACCGCAG
GCGCTTGGCGCGGGGGCGGAGGAAGTGCTTGAGGACCTCCGGGCTTGGTG
CCAAGAAGACGGCGGACCGCAGGCGCTTGGCGCGGTGTCAAACTTTGACG
AGCGCCTCCACCCGCTCCTGAAGAACCTCGGCGTCTACGACTCCTTCGAC
TTCGTGCTAACTTCGAGGTGTCAAACTTTGACGAGCGCCTCCACCCGCTC
CTGAAGAACCTCGGCGTCTACGACTCCTTCGACTTCGTGCTAACTTCGAG
AGAATGCGGCTCGGAGAAACCGAACCCGGGCATATTTCTGGAGGCCGCCA
AGCTGGCGGGCGCCAGCGGTGGAGACGGCGGGGGGAGAGGGGTGCTGGTC
GGCGACACCTTCAGAACGGACGTGCTCGGCGCGAGATCCGTCGGCTGGGA
TGCCGTGCTCATCACGAGGGGGAAAGACCCGGCTGGAGACGACGAGCGAG
AGATGGACCATGTCCGCGTTGATAATCTGAGAGCCGTACCCGCCGCGCTG
GGCATTGTTGACAGACGATGAAGAATGCGGCTCGGAGAAACCGAACCCGG
GCATATTTCTGGAGGCCGCCAAGCTGGCGGGCGCCAGCGGTGGAGACGGC
GGGGGGAGAGGGGTGCTGGTCGGCGACACCTTCAGAACGGACGTGCTCGG
CGCGAGATCCGTCGGCTGGGATGCCGTGCTCATCACGAGGGGGAAAGACC
CGGCTGGAGACGACGAGCGAGAGATGGACCATGTCCGCGTTGATAATCTG
AGAGCCGTACCCGCCGCGCTGGGCATTGTTGACAGACGATGA
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