mRNA_L-elsbetiae_contig13699.2815.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13699.2815.1
Unique NamemRNA_L-elsbetiae_contig13699.2815.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13699.2815.1 vs. uniprot
Match: A0A6H5JAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 5.100e-20
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 2 
Query: 1124 LTWQPTPFSTTDFVAK-IPERPSEVAFRSTSVGGKGDSVIVLPEPRYEAAVALFKRRGDFPQTTNGVEDP 1330
            + WQPTPFS TDFVAK I  RP EVAFRSTSVGGKGD+VIV+P  RY+AA+ LF RR + P TT+GVEDP
Sbjct:    1 MQWQPTPFSATDFVAKNISGRPDEVAFRSTSVGGKGDTVIVIPTSRYKAALDLFSRRHELPATTDGVEDP 70
[Close]
BLAST of mRNA_L-elsbetiae_contig13699.2815.1 vs. uniprot
Match: A0A6H5LDF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDF4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.360e-15
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 2 
Query: 1142 PFSTTDFVAK-IPERPSEVAFRSTSVGGKGDSVIVLPEPRYEAAVALFKRRGDFPQTTNGVEDP 1330
            PFS ++FVAK I  RP EVAFRSTSVGG G +VIV+P  RYEAA+ L+ RR +FP TT+GVEDP
Sbjct:    8 PFSASNFVAKNISGRPGEVAFRSTSVGGNGGTVIVIPTSRYEAALDLYSRRHEFPATTDGVEDP 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13699.2815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAK8_9PHAE5.100e-2071.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDF4_9PHAE8.360e-1567.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13699contigL-elsbetiae_contig13699:2..2494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1332
Cds size483
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13699.2815.1prot_L-elsbetiae_contig13699.2815.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13699 849..2494 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.3777924-UTR-L-elsbetiae_contig13699:1..8481622815533.3777924-UTR-L-elsbetiae_contig13699:1..848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13699 2..848 +
1691682944.6969135-UTR-L-elsbetiae_contig13699:1..8481691682944.6969135-UTR-L-elsbetiae_contig13699:1..848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13699 2..848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.3912144-CDS-L-elsbetiae_contig13699:848..9201622815533.3912144-CDS-L-elsbetiae_contig13699:848..920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13699 849..920 +
1691682944.711779-CDS-L-elsbetiae_contig13699:848..9201691682944.711779-CDS-L-elsbetiae_contig13699:848..920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13699 849..920 +
1622815533.4620342-CDS-L-elsbetiae_contig13699:1247..13461622815533.4620342-CDS-L-elsbetiae_contig13699:1247..1346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13699 1248..1346 +
1691682944.7222228-CDS-L-elsbetiae_contig13699:1247..13461691682944.7222228-CDS-L-elsbetiae_contig13699:1247..1346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13699 1248..1346 +
1622815533.4740078-CDS-L-elsbetiae_contig13699:2005..21161622815533.4740078-CDS-L-elsbetiae_contig13699:2005..2116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13699 2006..2116 +
1691682944.7309747-CDS-L-elsbetiae_contig13699:2005..21161691682944.7309747-CDS-L-elsbetiae_contig13699:2005..2116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13699 2006..2116 +
1622815533.4883552-CDS-L-elsbetiae_contig13699:2293..24941622815533.4883552-CDS-L-elsbetiae_contig13699:2293..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13699 2294..2494 +
1691682944.7400289-CDS-L-elsbetiae_contig13699:2293..24941691682944.7400289-CDS-L-elsbetiae_contig13699:2293..2494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13699 2294..2494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13699.2815.1

>prot_L-elsbetiae_contig13699.2815.1 ID=prot_L-elsbetiae_contig13699.2815.1|Name=mRNA_L-elsbetiae_contig13699.2815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MSIFSKKALRESRKGTPSISTFFTSDSPPRGPPTSGGALGAIHINSPNKT
AAPSSSKSRKRGRADESDEFNFFDDTSMASKESEEGSVEAPPLTWQPTPF
STTDFVAKIPERPSEVAFRSTSVGGKGDSVIVLPEPRYEAAVALFKRRGD
FPQTTNGVEDP
back to top

mRNA from alignment at L-elsbetiae_contig13699:2..2494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13699.2815.1 ID=mRNA_L-elsbetiae_contig13699.2815.1|Name=mRNA_L-elsbetiae_contig13699.2815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2493bp|location=Sequence derived from alignment at L-elsbetiae_contig13699:2..2494+ (Laminarionema elsbetiae ELsaHSoW15)
CACAAATTGGCTCTCCCTCATAACTCGAAGGGAATTGCGAAACACGCGTC
GACGCATCCTCGCCGAAGCACCAGGGGGTAAGTATTGCGATGATCGGAGC
GATTTGTGGGCCTTTTCGTGTCTCTTCTTCGTGGCCACCTCAAGCCGCCA
ACAAGTGTAGCCGTTAGTTTTCGGCCTCGACCAAATTCAAATCGAGGTAC
TGCTGTACACGGCGGTAGCATAAGACATGGACTCCGGTGTCACGTGGCGG
AAGCGAGGAGAGAGCCTCCCCACGTGCCCCGACGTGTACATACGTTCTCT
CCTCCGAGCGGTCCGTGACCAAAAAGCGCGGCTGCTCCCTCTAGTTCGAT
GTAGCCTCAGTGAACCAAATAAATACTATCCAGGGCGGATGCGCACAGAG
GGAGAGCACCTGCACCCCTGAGCCTCGTAATCGGCGAGAGATCCTCGAGA
GAAGACTCAGATTGCCGATCCAGCACGGTCTACTTGATTAATACGGTCAC
CTCTCTTTGACTTGTACTGCCGTATATATACACGGGGACGGCGTTTGCTT
GCAACACGTCCGCACTCAAAAAGGGAACCGGGCCAAGCACATACATAGAC
TACACATCGTCTATGTGTGATACAATCTTGGTGCCGGAGTTCATGACACA
GACTTTAGGACACTGTACTTCAGCGTCGTCCCAGCCTTATCATAAACACA
GACAGTTAAACTGGGATTGATGTGCCAGGCGTTGTCAAATCGGCTGAGAC
ACCGGACCTCATGTGCATTAACTCGAAACAACCTCTAACCTCCACGCCTT
CCTCTTGCTCGCGTGATCTTTGTTGAACAAATCTTGCAGAAAGAACGATG
TCGATATTCTCCAAGAAAGCGCTACGTGAGTCCCGCAAGGGCACGCCCAG
CATCTCCACCTTTTTCACGGTGCGTATTTGGAGGTACAGTAGAGGCTACA
TATATACATGCATAGCACGGCCCGTGTTACCCTGAATAATGCTCCTCCCC
GCACCAGGTCCCTGCACTATCCATTCGGTCCGCTTTGAAGGACAACTGGT
GCGTCTTTCGGACTCTGCCACCAATTGCACCATCCAGCAACACCCGAAAC
TCCCGATAGTCGATCGATCACTCCGTACCTCGATCACCTACTCCCCGGCA
GGCGTTCGCTCTGCCATGAAACCGATTACTGATGTTCTGTTTGTTGGATT
CACCTCCCACGGGGTCGTCTCGGCGCACCCATGTTCCACATTCCAGAGCG
ACAGCCCTCCCCGTGGCCCGCCAACATCGGGCGGCGCGTTGGGCGCCATA
CATATCAATAGCCCGAACAAGACTGCCGCACCATCGTCGAGCAAGGTGAA
TACTGTCAGGATTGCTGCCGTCTCCGTGGATCTCCAGCCGCTCTTCCGAG
AAATTCTGTGGCGGGCGCTCTCGTACAATGGTGATAGTTCTTTTCGGCGC
ACACCCATATACCGATGAACGAATTCGCTGGTACGAGTCGGAACGCCTCT
TTTGTTCGACTTCCCTCTGCGCTTGAAACAACCGCAAGCAACCCCCCCCC
CCTGGTTTCACTCCATTCCCTTCCAACCCGAGCTGACGATGACCACCGCC
CAGAGCATCACGTTTGCAGAGAAGGCATGTATATGTTGCCTTACATGGTC
GTTGAAACTTCGTACATGCCAGCGAGGCCGTGTGTCACCCACCTGCTTGT
GCGCGTTTCCCCCCCTCCCCCTTGATTCCATGTGTGAGATTCTAGGCTGT
CGGCACCGAGGTTATCGCAGAGGCACGTCAAAATAATTGCTCCAGAGGGG
GCTTTTGATTTTCGGGGAAAGTCGTGTCATGTCCCCCTGTTTATCCACCT
CTCGTTCTTCATTGCCAAATTAATGGGTATGGTTGCTGCATCGTTGAGAA
CTAACGGTGACACGTAGGCGGTACCTTCAAGACCGCCCTCGTCACGCCGT
GCTGTCGACGGTGCTGTGTTTTTCTCGATTTCACGCGTGTATGTTACCCA
CCAGTCGAGGAAACGCGGTCGTGCCGACGAGAGCGACGAGTTCAATTTCT
TCGATGACACGTCCATGGCTTCCAAGGAGTCGGAGGAAGGCTCCGTGGAG
GCGCCACCGTTGACTGTGAGTATAACAAGGGATGGTCCGTCTCCTGGCGA
CCTCGATGATAGGTTTGTTCCCTCGACAGCTCTACCCGAGCGCGACAGAT
GCACTCGATCCGCGAGACACGTACATTTTTCTTCGAAGACGTTTTGAACT
GTTGGCGCCGCCTCACTTTCCTTTCATTCGCGATGTATGCAGTGGCAACC
TACCCCATTCTCCACTACGGACTTCGTGGCGAAGATCCCCGAGAGGCCCA
GCGAGGTGGCTTTTCGGAGCACATCCGTGGGGGGGAAGGGAGATAGTGTC
ATAGTACTTCCGGAGCCTCGTTACGAGGCCGCCGTCGCCTTGTTCAAGAG
GCGAGGCGACTTCCCGCAGACGACCAACGGTGTCGAAGATCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13699:2..2494+

>mRNA_L-elsbetiae_contig13699.2815.1 ID=mRNA_L-elsbetiae_contig13699.2815.1|Name=mRNA_L-elsbetiae_contig13699.2815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig13699:2..2494+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGATATTCTCCAAGAAAGCGCTACGTGAGTCCCGCAAGGGCACGCC
CAGCATCTCCACCTTTTTCACGATGTCGATATTCTCCAAGAAAGCGCTAC
GTGAGTCCCGCAAGGGCACGCCCAGCATCTCCACCTTTTTCACGAGCGAC
AGCCCTCCCCGTGGCCCGCCAACATCGGGCGGCGCGTTGGGCGCCATACA
TATCAATAGCCCGAACAAGACTGCCGCACCATCGTCGAGCAAGAGCGACA
GCCCTCCCCGTGGCCCGCCAACATCGGGCGGCGCGTTGGGCGCCATACAT
ATCAATAGCCCGAACAAGACTGCCGCACCATCGTCGAGCAAGTCGAGGAA
ACGCGGTCGTGCCGACGAGAGCGACGAGTTCAATTTCTTCGATGACACGT
CCATGGCTTCCAAGGAGTCGGAGGAAGGCTCCGTGGAGGCGCCACCGTTG
ACTTCGAGGAAACGCGGTCGTGCCGACGAGAGCGACGAGTTCAATTTCTT
CGATGACACGTCCATGGCTTCCAAGGAGTCGGAGGAAGGCTCCGTGGAGG
CGCCACCGTTGACTTGGCAACCTACCCCATTCTCCACTACGGACTTCGTG
GCGAAGATCCCCGAGAGGCCCAGCGAGGTGGCTTTTCGGAGCACATCCGT
GGGGGGGAAGGGAGATAGTGTCATAGTACTTCCGGAGCCTCGTTACGAGG
CCGCCGTCGCCTTGTTCAAGAGGCGAGGCGACTTCCCGCAGACGACCAAC
GGTGTCGAAGATCCCTGGCAACCTACCCCATTCTCCACTACGGACTTCGT
GGCGAAGATCCCCGAGAGGCCCAGCGAGGTGGCTTTTCGGAGCACATCCG
TGGGGGGGAAGGGAGATAGTGTCATAGTACTTCCGGAGCCTCGTTACGAG
GCCGCCGTCGCCTTGTTCAAGAGGCGAGGCGACTTCCCGCAGACGACCAA
CGGTGTCGAAGATCCC
back to top