mRNA_L-elsbetiae_contig1369.2803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1369.2803.1
Unique NamemRNA_L-elsbetiae_contig1369.2803.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: A0A7S6U9X1_9STRA (Photosystem I reaction center subunit XI n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9X1_9STRA)

HSP 1 Score: 244 bits (623), Expect = 5.330e-81
Identity = 122/150 (81.33%), Postives = 137/150 (91.33%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNLNL 450
            MTSFIK YNNDPFVGHLSTP+TTS+TTKAFL SLPIYR GLSPLL+GLEIGMAHGYL+VGPFDKLGPLR+SEIA+L GFL+SLGL++ILT CL MYG+VTFQ+SNE+    + NKDLLT KNWN+FTSGFFIG+FGGASFAYLILLNL L
Sbjct:    1 MTSFIKPYNNDPFVGHLSTPVTTSATTKAFLGSLPIYRSGLSPLLRGLEIGMAHGYLLVGPFDKLGPLRNSEIALLAGFLASLGLISILTTCLIMYGKVTFQESNEIKK--VANKDLLTGKNWNQFTSGFFIGAFGGASFAYLILLNLGL 148          
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: A0A6G6D758_ECTSI (Photosystem I reaction center subunit XI n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D758_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.840e-74
Identity = 109/149 (73.15%), Postives = 133/149 (89.26%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNLN 447
            MTSFIK YNNDP VGHLSTP+T+S+ TKA+L SLP YR GLSPLL+GLEIGMAHGYL++GPF+KLGPLR SEI++L+GFLSS+GL+ +LTVCL+MYG+VTFQ+S+   N+++N  DLL  KNWN+FTSGFF+GSFGG SFAYLILLNL+
Sbjct:    1 MTSFIKPYNNDPSVGHLSTPVTSSAATKAYLGSLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRGSEISLLIGFLSSIGLITLLTVCLAMYGKVTFQESD---NDVVNKNDLLNGKNWNQFTSGFFVGSFGGVSFAYLILLNLD 146          
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: A0A6B7EXU1_9PHAE (Photosystem I reaction center subunit XI n=2 Tax=Chordariaceae TaxID=66220 RepID=A0A6B7EXU1_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 5.090e-74
Identity = 112/149 (75.17%), Postives = 131/149 (87.92%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNLN 447
            MTSFIK YNNDP VGHLSTP+T+S+ TKAFL SLP YR GLSPLL+GLEIGMAHGYL++GPF+KLGPLR SEIA+L+GFLSS+GL+ ILTVCL+MYG+VTFQ   E +N+  N  DLL+ KNWN+FTSGFF+GSFGG SFAYLILLNL+
Sbjct:    1 MTSFIKPYNNDPSVGHLSTPVTSSAATKAFLGSLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRTSEIALLIGFLSSVGLVTILTVCLAMYGKVTFQ---EADNDSNNRNDLLSGKNWNQFTSGFFVGSFGGVSFAYLILLNLS 146          
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: A0A8E5XRG2_9PHAE (Photosystem I reaction center subunit XI n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRG2_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.240e-72
Identity = 110/149 (73.83%), Postives = 130/149 (87.25%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNLN 447
            MTSFIK YNNDP VGHLSTPIT S+ TKAFL +LP YR GLSPLL+GLEIGMAHGYL++GPFDKLGPLRDSE+++L GFLSS+GLL ILTVCL+MYG+VTFQ S +++ +   N+ +L  +NWN+FTSGFFIGSFGGA FAYLILLNL+
Sbjct:    1 MTSFIKPYNNDPSVGHLSTPITASAATKAFLGNLPAYRNGLSPLLRGLEIGMAHGYLLLGPFDKLGPLRDSEVSLLAGFLSSIGLLTILTVCLAMYGKVTFQRSEKISED---NQGVLGYRNWNRFTSGFFIGSFGGAGFAYLILLNLD 146          
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: A0A1L2F1Y4_9PHAE (Photosystem I reaction center subunit XI n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1Y4_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.650e-72
Identity = 111/149 (74.50%), Postives = 129/149 (86.58%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNLN 447
            MTSFIK YN+DP VGHLSTPIT+S+ TKA+L SLP YR GLSPLL+GLEIGMAHGYL++GPF+KLGPLR+SE+A L+GFLSS+GL+ ILTVCL+MYG+VTF DS+  N       +LLT KNWN+FTSGFFIGSFGG SFAYLILLNLN
Sbjct:    1 MTSFIKPYNDDPSVGHLSTPITSSAATKAYLASLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRESELAPLIGFLSSVGLITILTVCLAMYGKVTFDDSDSTNTI-----ELLTSKNWNQFTSGFFIGSFGGVSFAYLILLNLN 144          
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: A0A2R4QPZ7_9PHAE (Photosystem I reaction center subunit XI n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPZ7_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 6.690e-72
Identity = 106/149 (71.14%), Postives = 132/149 (88.59%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNLN 447
            MTSFIK YN+DP VGHLSTPIT+S+ TKA+L SLP YR GLSPLL+GLEIGMAHGYL++GPF+KLGPLR+SE+++L+GFLSS+ L+ +LTVCL+MYG+VTF+DS     +++N  +LLT KNWN+FTSGFFIGSFGG SFAYLILLN++
Sbjct:    1 MTSFIKPYNDDPSVGHLSTPITSSAATKAYLASLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRESELSLLIGFLSSVALVTLLTVCLAMYGKVTFEDS-----DVINTNELLTSKNWNQFTSGFFIGSFGGVSFAYLILLNID 144          
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: A0A8F0JXT2_9PHAE (Photosystem I reaction center subunit XI n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXT2_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.470e-70
Identity = 107/148 (72.30%), Postives = 128/148 (86.49%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNL 444
            MTSFIK +N+DP VGHLSTP+T+S+ TKA+L++LP YR GLSPLL+G+EIGMAHGYL+VGPF KLGPLRDSEI++LVGFLSS+ L+ +LT+CL MYG+VTFQ+ +EVN       DLL  KNWN+FTSGF IGSFGGASFAYLILLNL
Sbjct:    1 MTSFIKPFNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSIALVTLLTICLVMYGKVTFQEYDEVNEN-----DLLNSKNWNRFTSGFLIGSFGGASFAYLILLNL 143          
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: A0A2I4Q2H3_9PHAE (Photosystem I reaction center subunit XI n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2H3_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 3.640e-67
Identity = 102/150 (68.00%), Postives = 131/150 (87.33%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNLNL 450
            M SFI+ +N+DP VGHLSTPIT+S+ TKA+L++LP YR GLSPLL+GLE+GMAHGYL++GPF KLGPLR+SEI++LVGFLS+  L++ILT+CL+MYG+VTFQDS++     +++ DLLT  NW++FTSGFFIG+FGG SFAYLILLNL L
Sbjct:    1 MISFIRPFNDDPSVGHLSTPITSSAATKAYLSNLPAYRKGLSPLLRGLEVGMAHGYLLLGPFAKLGPLRESEISLLVGFLSASALISILTICLAMYGKVTFQDSSKD----ISSNDLLTSTNWSRFTSGFFIGAFGGISFAYLILLNLEL 146          
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: B7T210_VAULI (Photosystem I reaction center subunit XI n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T210_VAULI)

HSP 1 Score: 203 bits (516), Expect = 1.100e-64
Identity = 97/149 (65.10%), Postives = 126/149 (84.56%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNLN 447
            M +FIK YNNDPFVGHLSTPITTS  TK FL +LPIYR  LSPL +GLE+GMAHGYL+VGPF+KLGPLR+SE+A+L GF+S+LGL+ IL +CL +YG+ +FQ+S + + +I N +DLLT++ W++FTSGF +G+FGGA FAYL+LLN+ 
Sbjct:    1 MANFIKPYNNDPFVGHLSTPITTSLITKTFLGNLPIYRENLSPLFRGLEVGMAHGYLLVGPFEKLGPLRNSEVALLSGFVSALGLIIILVLCLVIYGKASFQESPKASLKITN-QDLLTKEGWSQFTSGFSVGAFGGAGFAYLLLLNIT 148          
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Match: A0A1Z1MSL9_9FLOR (Photosystem I reaction center subunit XI n=6 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MSL9_9FLOR)

HSP 1 Score: 192 bits (488), Expect = 2.210e-60
Identity = 93/148 (62.84%), Postives = 122/148 (82.43%), Query Frame = 1
Query:    1 MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEIGMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVTFQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNL 444
            MT+FIK YN DPFVG+LSTPI+TSS TK+ L++LP YR GLSPLL+GLEIGMAHGY ++GPFDKLGPLR+++IA+L GFLS++GL+ ILT CLSMYG VTF ++++ + +I     L T   W++FT+GFF+G+ GG+ FAYL+L NL
Sbjct:    1 MTNFIKPYNRDPFVGNLSTPISTSSLTKSLLSNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRNTDIALLSGFLSAVGLIVILTACLSMYGSVTFSNNSDESKDI-----LQTSGGWSQFTAGFFVGAVGGSGFAYLLLANL 143          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1369.2803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9X1_9STRA5.330e-8181.33Photosystem I reaction center subunit XI n=1 Tax=S... [more]
A0A6G6D758_ECTSI1.840e-7473.15Photosystem I reaction center subunit XI n=36 Tax=... [more]
A0A6B7EXU1_9PHAE5.090e-7475.17Photosystem I reaction center subunit XI n=2 Tax=C... [more]
A0A8E5XRG2_9PHAE1.240e-7273.83Photosystem I reaction center subunit XI n=1 Tax=I... [more]
A0A1L2F1Y4_9PHAE1.650e-7274.50Photosystem I reaction center subunit XI n=14 Tax=... [more]
A0A2R4QPZ7_9PHAE6.690e-7271.14Photosystem I reaction center subunit XI n=3 Tax=F... [more]
A0A8F0JXT2_9PHAE1.470e-7072.30Photosystem I reaction center subunit XI n=1 Tax=P... [more]
A0A2I4Q2H3_9PHAE3.640e-6768.00Photosystem I reaction center subunit XI n=1 Tax=D... [more]
B7T210_VAULI1.100e-6465.10Photosystem I reaction center subunit XI n=1 Tax=V... [more]
A0A1Z1MSL9_9FLOR2.210e-6062.84Photosystem I reaction center subunit XI n=6 Tax=R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1369contigL-elsbetiae_contig1369:3117..3569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue3.8e-57
Seed eggNOG ortholog2880.D1J7C4
Preferred namePSAL
KEGG koko:K02699
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs28NVH@1,2QVFH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons1
Model size453
Cds size453
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.6993904-CDS-L-elsbetiae_contig1369:3116..35691622815532.6993904-CDS-L-elsbetiae_contig1369:3116..3569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1369 3117..3569 -
1691682944.486517-CDS-L-elsbetiae_contig1369:3116..35691691682944.486517-CDS-L-elsbetiae_contig1369:3116..3569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1369 3117..3569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1369.2803.1prot_L-elsbetiae_contig1369.2803.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1369 3117..3569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1369.2803.1

>prot_L-elsbetiae_contig1369.2803.1 ID=prot_L-elsbetiae_contig1369.2803.1|Name=mRNA_L-elsbetiae_contig1369.2803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MTSFIKSYNNDPFVGHLSTPITTSSTTKAFLNSLPIYRVGLSPLLKGLEI
GMAHGYLIVGPFDKLGPLRDSEIAVLVGFLSSLGLLAILTVCLSMYGQVT
FQDSNEVNNEILNNKDLLTRKNWNKFTSGFFIGSFGGASFAYLILLNLNL
*
back to top

mRNA from alignment at L-elsbetiae_contig1369:3117..3569-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1369.2803.1 ID=mRNA_L-elsbetiae_contig1369.2803.1|Name=mRNA_L-elsbetiae_contig1369.2803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=453bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:3117..3569- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAGTTTTATTAAATCTTATAATAATGATCCTTTTGTTGGACATTT ATCAACACCTATTACAACCTCTTCTACTACAAAAGCTTTTTTAAATAGTT TACCTATCTATAGAGTTGGGTTATCACCTTTGTTAAAAGGTTTAGAAATT GGAATGGCACATGGTTATTTAATAGTCGGACCTTTTGATAAATTAGGTCC ATTAAGAGATTCTGAAATTGCTGTATTAGTTGGTTTTTTATCTTCATTAG GATTATTAGCAATTTTAACAGTTTGTTTAAGCATGTATGGACAAGTAACA TTTCAAGACTCAAATGAGGTTAATAACGAGATATTAAATAATAAAGATTT ATTAACAAGAAAAAATTGGAATAAATTTACATCAGGCTTTTTTATTGGAT CATTTGGAGGTGCAAGTTTTGCTTATTTAATATTATTAAATTTAAATTTA TAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1369:3117..3569-

>mRNA_L-elsbetiae_contig1369.2803.1 ID=mRNA_L-elsbetiae_contig1369.2803.1|Name=mRNA_L-elsbetiae_contig1369.2803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig1369:3117..3569- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAGTTTTATTAAATCTTATAATAATGATCCTTTTGTTGGACATTT
ATCAACACCTATTACAACCTCTTCTACTACAAAAGCTTTTTTAAATAGTT
TACCTATCTATAGAGTTGGGTTATCACCTTTGTTAAAAGGTTTAGAAATT
GGAATGGCACATGGTTATTTAATAGTCGGACCTTTTGATAAATTAGGTCC
ATTAAGAGATTCTGAAATTGCTGTATTAGTTGGTTTTTTATCTTCATTAG
GATTATTAGCAATTTTAACAGTTTGTTTAAGCATGTATGGACAAGTAACA
TTTCAAGACTCAAATGAGGTTAATAACGAGATATTAAATAATAAAGATTT
ATTAACAAGAAAAAATTGGAATAAATTTACATCAGGCTTTTTTATTGGAT
CATTTGGAGGTGCAAGTTTTGCTTATTTAATATTATTAAATTTAAATTTA
TAAATGACAAGTTTTATTAAATCTTATAATAATGATCCTTTTGTTGGACA
TTTATCAACACCTATTACAACCTCTTCTACTACAAAAGCTTTTTTAAATA
GTTTACCTATCTATAGAGTTGGGTTATCACCTTTGTTAAAAGGTTTAGAA
ATTGGAATGGCACATGGTTATTTAATAGTCGGACCTTTTGATAAATTAGG
TCCATTAAGAGATTCTGAAATTGCTGTATTAGTTGGTTTTTTATCTTCAT
TAGGATTATTAGCAATTTTAACAGTTTGTTTAAGCATGTATGGACAAGTA
ACATTTCAAGACTCAAATGAGGTTAATAACGAGATATTAAATAATAAAGA
TTTATTAACAAGAAAAAATTGGAATAAATTTACATCAGGCTTTTTTATTG
GATCATTTGGAGGTGCAAGTTTTGCTTATTTAATATTATTAAATTTAAAT
TTATAA
back to top