mRNA_L-elsbetiae_contig13688.2799.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig13688.2799.1
Unique Name	mRNA_L-elsbetiae_contig13688.2799.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig13688.2799.1 vs. uniprot
Match: A0A6H5LBZ3_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBZ3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.490e-20
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 2

Query:  254 MEVGANVWVKDKDGEEAWVAGVVLEKSAGKPVKVEIEVDEDFSEEPLTFTFNEDD 418
            MEVGA VWVKDK+GEEAWVAG VLEKSAGKP KVEIEVDE+FSEEPLTFT  E+D
Sbjct:    1 MEVGAAVWVKDKEGEEAWVAGTVLEKSAGKPCKVEIEVDEEFSEEPLTFTLREED 55

[Close]

BLAST of mRNA_L-elsbetiae_contig13688.2799.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.710e-20
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 2

Query:  254 MEVGANVWVKDKDGEEAWVAGVVLEKSAGKPVKVEIEVDEDFSEEPLTFTFNEDD 418
            MEVGA VWVKDK+GEEAWVAG VLEKSAGKP KVEIEVDE+FSEEPLTFT  E+D
Sbjct:    1 MEVGAAVWVKDKEGEEAWVAGTVLEKSAGKPCKVEIEVDEEFSEEPLTFTLREED 55

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig13688.2799.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig13688.2799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5LBZ3_9PHAE	3.490e-20	85.45	Myosin motor domain-containing protein n=1 Tax=Ect...	[more]
D8LTS1_ECTSI	3.710e-20	85.45	Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig13688	contig	L-elsbetiae_contig13688:3261..3678 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	96.7
Seed ortholog evalue	3.7e-18
Seed eggNOG ortholog	2880.D8LTS1
KEGG ko	ko:K10357
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.	translation initiation factor activity
EggNOG OGs	COG5022@1,KOG0160@2759
COG Functional cat.	Z
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03019,ko03029,ko04131,ko04812
Exons	1
Model size	420
Cds size	165
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815532.5201967-UTR-L-elsbetiae_contig13688:3260..3513	1622815532.5201967-UTR-L-elsbetiae_contig13688:3260..3513	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig13688 3261..3513 +
1691682944.4332948-UTR-L-elsbetiae_contig13688:3260..3513	1691682944.4332948-UTR-L-elsbetiae_contig13688:3260..3513	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig13688 3261..3513 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815532.5403807-CDS-L-elsbetiae_contig13688:3513..3678	1622815532.5403807-CDS-L-elsbetiae_contig13688:3513..3678	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13688 3514..3678 +
1691682944.4437737-CDS-L-elsbetiae_contig13688:3513..3678	1691682944.4437737-CDS-L-elsbetiae_contig13688:3513..3678	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig13688 3514..3678 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig13688.2799.1	prot_L-elsbetiae_contig13688.2799.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig13688 3514..3678 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig13688:3261..3678+
coding sequence from alignment at L-elsbetiae_contig13688:3261..3678+

protein sequence of mRNA_L-elsbetiae_contig13688.2799.1

>prot_L-elsbetiae_contig13688.2799.1 ID=prot_L-elsbetiae_contig13688.2799.1|Name=mRNA_L-elsbetiae_contig13688.2799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
MEVGANVWVKDKDGEEAWVAGVVLEKSAGKPVKVEIEVDEDFSEEPLTFT
FNEDD

mRNA from alignment at L-elsbetiae_contig13688:3261..3678+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig13688.2799.1 ID=mRNA_L-elsbetiae_contig13688.2799.1|Name=mRNA_L-elsbetiae_contig13688.2799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=418bp|location=Sequence derived from alignment at L-elsbetiae_contig13688:3261..3678+ (Laminarionema elsbetiae ELsaHSoW15)
GGACAACTCCACGTGAAGCCCTCGTCGTTGCTCGAGAGGCTTTGGAGAGA
CAGCAGACTTACACGCCTCTAGGGGCGGGCGTTTCATCCAGACGCCGGGA
GGGGTAAGCGCGGCTTTGCGAGTTGCACTCACCTTCGGGGAGAAATTAGG
AAAAGAGTCTTGGGTCCCAGGACAAGACACAGACATCGGGAGCGCACGTT
TTCGTTCTTTGCTGCTCGTGTTCGTGCGCTCGAGAGACTCGAGCTTGTGA
ACCATGGAGGTTGGTGCGAATGTGTGGGTAAAGGACAAGGACGGGGAGGA
GGCTTGGGTGGCGGGGGTCGTGCTGGAGAAGAGCGCGGGGAAGCCGGTCA
AGGTCGAGATCGAGGTGGACGAAGATTTCTCGGAGGAGCCTCTCACGTTC
ACCTTTAACGAAGACGAT

Coding sequence (CDS) from alignment at L-elsbetiae_contig13688:3261..3678+

>mRNA_L-elsbetiae_contig13688.2799.1 ID=mRNA_L-elsbetiae_contig13688.2799.1|Name=mRNA_L-elsbetiae_contig13688.2799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig13688:3261..3678+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGTTGGTGCGAATGTGTGGGTAAAGGACAAGGACGGGGAGGAGGC
TTGGGTGGCGGGGGTCGTGCTGGAGAAGAGCGCGGGGAAGCCGGTCAAGG
TCGAGATCGAGGTGGACGAAGATTTCTCGGAGGAGCCTCTCACGTTCACC
TTTAACGAAGACGATATGGAGGTTGGTGCGAATGTGTGGGTAAAGGACAA
GGACGGGGAGGAGGCTTGGGTGGCGGGGGTCGTGCTGGAGAAGAGCGCGG
GGAAGCCGGTCAAGGTCGAGATCGAGGTGGACGAAGATTTCTCGGAGGAG
CCTCTCACGTTCACCTTTAACGAAGACGAT