mRNA_L-elsbetiae_contig13675.2794.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13675.2794.1
Unique NamemRNA_L-elsbetiae_contig13675.2794.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: D8LIC2_ECTSI (Eukaryotic initiation factor eIF3 i subunit p36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC2_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 4.980e-101
Identity = 153/181 (84.53%), Postives = 163/181 (90.06%), Query Frame = 1 
Query:    1 DSTRMISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPDDVPTDQLQKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLDANTLTV 543
            DSTRM+SASADASARMWDVQTGRELVVYNH GPVRSV+FAEGGQRFATVSDPFTDSPG ISVFE PDDVPTDQL+KIACLEIDLPPKMKATKVVWGALNEKLIV+YADGTIRTFDP+DGTELEYAQVG  +G  +         +H+KDI RLCINKDRTLLLTCSKDYT+KLLDANTL V
Sbjct:   63 DSTRMLSASADASARMWDVQTGRELVVYNHMGPVRSVSFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLEKIACLEIDLPPKMKATKVVWGALNEKLIVAYADGTIRTFDPFDGTELEYAQVGTRQGRSSG--------VHSKDINRLCINKDRTLLLTCSKDYTSKLLDANTLQV 235
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BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: A0A6H5KMX5_9PHAE (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMX5_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 3.400e-78
Identity = 129/159 (81.13%), Postives = 132/159 (83.02%), Query Frame = 1 
Query:   67 RELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPDDVPTDQLQKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLDANTLTV 543
            RELVVYNH GPVRSVAFAEGGQRFATVSDPFTDSPG ISVFE PDDVPTDQL KIA LEIDLPPKMKAT VVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQV                  H++DI RLCINKDRTLLLT SKDYT+KLLDANTL V
Sbjct:   85 RELVVYNHMGPVRSVAFAEGGQRFATVSDPFTDSPGLISVFEAPDDVPTDQLDKIASLEIDLPPKMKATTVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQV------------------HSQDINRLCINKDRTLLLTSSKDYTSKLLDANTLQV 225
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BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: A0A835ZF13_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF13_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.440e-55
Identity = 96/181 (53.04%), Postives = 123/181 (67.96%), Query Frame = 1 
Query:    1 DSTRMISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPDDVPTDQLQKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLDANTLTV 543
            DS  ++SASADA+ R+WDVQTG  LV Y H GPVRSV +AEGGQ+F + S PF DSPGFIS+++TP DV   Q Q++A  EI +P K K T+V+W ALN++++ S+ DGTIR FDP  G  L  +                    H+K I+R+ ++ DRTLLLTCSKDYTAKLLDA+TL V
Sbjct:   63 DSKYLLSASADATVRLWDVQTGESLVSYPHRGPVRSVCWAEGGQKFVSASQPFMDSPGFISIYDTPSDVDPSQYQQVASREISIPNKEKCTEVLWSALNDRILASFEDGTIRVFDPETGELLSTSTP------------------HSKPISRMYLSTDRTLLLTCSKDYTAKLLDADTLEV 225
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BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: A0A7S1TX14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX14_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.060e-34
Identity = 71/181 (39.23%), Postives = 110/181 (60.77%), Query Frame = 1 
Query:    1 DSTRMISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPDDVPTDQLQKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLDANTLTV 543
            DS+R+++ASADA+ R+WDV+TGREL  Y H GPVR+VA+AEGG+ FAT ++PF   PG ++V+  P       L  I     ++PP+++A ++VW   N++L+++Y DG++   D   G EL+            CF +      HT  +  L  + D+T+++T S D +AKL+DA T  V
Sbjct:   91 DSSRLLTASADATVRLWDVRTGRELANYTHRGPVRAVAWAEGGEYFATAAEPFGRYPGQVAVYYCPAGAEEYDLLPIEGRMFEIPPEVRAAQLVWLNNNKELLIAYDDGSLHILDAEFGEELQ------------CFKY------HTAKVMDLQFSVDKTMIITASYDTSAKLIDATTFEV 253
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BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: A0A7S2NVM0_9STRA (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NVM0_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.690e-34
Identity = 74/178 (41.57%), Postives = 102/178 (57.30%), Query Frame = 1 
Query:    7 TRMISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPDDVPTDQLQKIACLEIDLPPKMK-----ATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLD 525
            T ++SASAD + ++W +  G+ +  Y H GPVR VA+A GGQ FAT+SDPF + PG+ISVF  P     +Q  +   LEI+LP   K     AT VVW  LNE + V++ +G IR +DP +G ELE  Q                   H K I R+  N+++T+ +T S D+TAKL D
Sbjct:   65 TYLLSASADTTVKLWSICDGQIIRDYPHRGPVRGVAWAAGGQMFATISDPFVEHPGYISVFAVPKSESPEQWSEKPILEIELPKNNKGQRVNATNVVWLNLNEAIFVTFDNGCIRLYDPENGEELEEIQP------------------HEKKINRVSFNRNKTMFITSSADFTAKLYD 224
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BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: A0A1Z5K121_FISSO (Eukaryotic translation initiation factor 3 subunit I n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K121_FISSO)

HSP 1 Score: 132 bits (332), Expect = 6.270e-34
Identity = 77/176 (43.75%), Postives = 101/176 (57.39%), Query Frame = 1 
Query:   10 RMISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPDDVPTDQLQKIACLEIDLPP----KMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLD 525
            R+++ASAD S R+WDV+TG  + V+NH GPVR VA+AEG Q F T+SDPF D P  I VF+ P+D           LEI+LP      +K T V W ALNE L+V++ +G IR +DP  G   E         EI           H K I RL  N+++TL +T S D+T+KL D
Sbjct:   66 RLLTASADTSCRLWDVRTGECIFVFNHKGPVRGVAWAEGSQMFVTISDPFVDHPAKICVFDAPEDQDPSTYTDPPRLEIELPKINGKVVKPTHVHWTALNEDLLVAFDNGQIRLYDPETGDLKE---------EITA---------HEKKINRLRFNREKTLFITSSADFTSKLYD 223
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BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: A0A6V2RRW4_HETAK (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2RRW4_HETAK)

HSP 1 Score: 130 bits (327), Expect = 2.860e-33
Identity = 73/181 (40.33%), Postives = 108/181 (59.67%), Query Frame = 1 
Query:    1 DSTRMISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPDDVPTDQLQKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLDANTLTV 543
            DSTR++S SADA+ +MWDV+TG E   +NH GPVRSV +AEG Q F +VSDPF +SP F+SV++ PDD   +Q++KI  LEI L  K       +   N++++V+  DG+IR +D   G ++   +                   HT+ I  +  NK+R+L+LT S D  +KL+D + + V
Sbjct:   63 DSTRLLSGSADATVKMWDVETGVETCTFNHKGPVRSVRWAEGCQAFVSVSDPFMESPPFVSVYDCPDDADPEQIEKIPRLEIQL-DKKSTGGAHFIKENKEILVAMEDGSIRIYDAETGEQIHQVKH------------------HTQKIQTVFFNKERSLMLTGSADTWSKLIDLDNMEV 224
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BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: A0A7R9YCC7_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCC7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.070e-32
Identity = 70/181 (38.67%), Postives = 109/181 (60.22%), Query Frame = 1 
Query:    1 DSTRMISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPDDVPTDQLQKIACLEIDLPPKMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLDANTLTV 543
            DS+R+++ASADA+ R+W+V+TGREL  Y+H+GPVR+VA+AEG Q FAT ++PF   PG I+V+  P D        I     ++PP+++A+++ W   N++++++Y DG++R  D   G EL    +                  H   I  +  + D+TLL+T S D ++KLLDA TL V
Sbjct:  101 DSSRLLTASADATVRLWEVRTGRELCQYDHSGPVRAVAWAEGCQYFATAAEPFGKHPGQIAVYYCPSDAEEYDQLPIENRVFEIPPEVRASQIAWLNNNKEILIAYDDGSLRILDAEYGDELHKFNI------------------HKHRIMDMQFSIDKTLLITASYDTSSKLLDATTLEV 263
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BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: A0A7S3L4V7_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4V7_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.080e-27
Identity = 66/178 (37.08%), Postives = 97/178 (54.49%), Query Frame = 1 
Query:    4 STRMISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPDDVPTDQLQKIACLEIDLPP----KMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLD 525
            S R+++ASAD + R+W+VQTG  +  + H GPVR V +AEG Q+F T++D F D P  ISV++ P+    +       L IDLP     ++  T V W A+NE ++V++ +G I+ +DP  G   E                      H K I R+  N D+TLL+T S D+T+KL D
Sbjct:   64 SRRLLTASADTTCRLWNVQTGECIRHFTHTGPVRGVEWAEGSQKFVTINDSFMDHPPKISVYDVPEGQDPESYSDEPSLVIDLPKHATKRVAPTNVKWTAMNEDILVAFDNGMIKLYDPETGEMKEEFSA------------------HEKKINRVQFNIDKTLLITSSADFTSKLYD 223
[Close]
BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Match: A0A1E7EXY2_9STRA (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXY2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.470e-26
Identity = 63/183 (34.43%), Postives = 107/183 (58.47%), Query Frame = 1 
Query:    4 STRMISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFTDSPGFISVFETPD-DVPTDQLQKIACLEIDLPP----KMKATKVVWGALNEKLIVSYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLCINKDRTLLLTCSKDYTAKLLDANTL 537
            S ++++ASADA+ ++W++Q+G     + H GPVR VA++E  ++FAT+SDPF +    I++F+T + D  +D+      LEID+P     +++ T + W ALNE L++++ +G +R ++P  GT  E  +V                  H K I RL +N+ ++L +T S D+T+KL D   L
Sbjct:   64 SKQLLTASADATVKLWNIQSGDLQHTFTHRGPVRGVAWSEDNKKFATISDPFVEHNAKITIFDTAELDGESDEDDLEPLLEIDVPKENSRRVQMTNISWTALNEHLLIAFDNGIVRLYNPTTGTIEEEIRV------------------HDKKINRLQLNQSKSLFITSSADFTSKLYDTANL 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13675.2794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC2_ECTSI4.980e-10184.53Eukaryotic initiation factor eIF3 i subunit p36 n=... [more]
A0A6H5KMX5_9PHAE3.400e-7881.13Eukaryotic translation initiation factor 3 subunit... [more]
A0A835ZF13_9STRA1.440e-5553.04Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S1TX14_9STRA1.060e-3439.23Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2NVM0_9STRA5.690e-3441.57Eukaryotic translation initiation factor 3 subunit... [more]
A0A1Z5K121_FISSO6.270e-3443.75Eukaryotic translation initiation factor 3 subunit... [more]
A0A6V2RRW4_HETAK2.860e-3340.33Eukaryotic translation initiation factor 3 subunit... [more]
A0A7R9YCC7_9STRA4.070e-3238.67Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S3L4V7_9STRA1.080e-2737.08Eukaryotic translation initiation factor 3 subunit... [more]
A0A1E7EXY2_9STRA2.470e-2634.43Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13675contigL-elsbetiae_contig13675:770..4691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score297.7
Seed ortholog evalue3.6e-78
Seed eggNOG ortholog2880.D8LIC2
Preferred nameTIF34
KEGG rclassRC00055,RC00523
KEGG koko:K03246,ko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,ko03013,map00970,map03013
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0001525,GO:0001568,GO:0001732,GO:0001889,GO:0001944,GO:0002040,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009628,GO:0009651,GO:0009653,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010494,GO:0016043,GO:0016282,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034399,GO:0034622,GO:0034641,GO:0034645,GO:0035239,GO:0035295,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048513,GO:0048514,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0050896,GO:0051716,GO:0061008,GO:0065003,GO:0070013,GO:0070887,GO:0070993,GO:0071214,GO:0071470,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0072358,GO:0072359,GO:0080008,GO:0097159,GO:0104004,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0643@1,KOG0643@2759
Ec32 ortholog descriptioneukaryotic initiation factor eIF3 i subunit p36
Ec32 orthologEc-24_001620.1
EC6.1.1.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016
Exons3
Model size564
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13675.2794.1prot_L-elsbetiae_contig13675.2794.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13675 770..4679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.01799-CDS-L-elsbetiae_contig13675:769..9011622815532.01799-CDS-L-elsbetiae_contig13675:769..901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13675 770..901 -
1691682944.1173446-CDS-L-elsbetiae_contig13675:769..9011691682944.1173446-CDS-L-elsbetiae_contig13675:769..901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13675 770..901 -
1622815532.033791-CDS-L-elsbetiae_contig13675:2973..31851622815532.033791-CDS-L-elsbetiae_contig13675:2973..3185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13675 2974..3185 -
1691682944.1316419-CDS-L-elsbetiae_contig13675:2973..31851691682944.1316419-CDS-L-elsbetiae_contig13675:2973..3185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13675 2974..3185 -
1622815532.0477467-CDS-L-elsbetiae_contig13675:4471..46791622815532.0477467-CDS-L-elsbetiae_contig13675:4471..4679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13675 4472..4679 -
1691682944.1402054-CDS-L-elsbetiae_contig13675:4471..46791691682944.1402054-CDS-L-elsbetiae_contig13675:4471..4679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13675 4472..4679 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.0604906-UTR-L-elsbetiae_contig13675:4679..46911622815532.0604906-UTR-L-elsbetiae_contig13675:4679..4691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13675 4680..4691 -
1691682944.1492848-UTR-L-elsbetiae_contig13675:4679..46911691682944.1492848-UTR-L-elsbetiae_contig13675:4679..4691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13675 4680..4691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13675.2794.1

>prot_L-elsbetiae_contig13675.2794.1 ID=prot_L-elsbetiae_contig13675.2794.1|Name=mRNA_L-elsbetiae_contig13675.2794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
MISASADASARMWDVQTGRELVVYNHNGPVRSVAFAEGGQRFATVSDPFT
DSPGFISVFETPDDVPTDQLQKIACLEIDLPPKMKATKVVWGALNEKLIV
SYADGTIRTFDPYDGTELEYAQVGGGRGEIACFHWGPPGLIHTKDIARLC
INKDRTLLLTCSKDYTAKLLDANTLTVSVWCVP*
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mRNA from alignment at L-elsbetiae_contig13675:770..4691-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13675.2794.1 ID=mRNA_L-elsbetiae_contig13675.2794.1|Name=mRNA_L-elsbetiae_contig13675.2794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3922bp|location=Sequence derived from alignment at L-elsbetiae_contig13675:770..4691- (Laminarionema elsbetiae ELsaHSoW15)
GACTCGACGCGGATGATTTCCGCGTCCGCCGACGCCTCGGCCCGCATGTG
GGACGTGCAGACAGGGCGGGAGCTGGTGGTGTACAACCACAATGGGCCGG
TGAGGTCGGTGGCCTTCGCGGAGGGGGGCCAGCGGTTCGCCACGGTGTCG
GACCCCTTCACGGACAGCCCCGGTTTCATCTCGGTGTTCGAGACCCCGGA
CGACGTGCCGACCGATCAATGTGAGGAAAGGGCAAGACAGGATAGATGAT
GCATACATACATACATGTGCCTGCTATTATATTACCCCCCTTTTTTACAC
AAGTGACACGAGATACCACACCCCCTGGACAGATTTTCAGAGCTCGATTC
GATTCCTCATTCCTCCCTGGCAAGACGAGTGCCGGCGCGGAAATGAGGTG
GCGTTGGAAAGATGTAGTCGAGGGCTGTCTGAAAATGTGTCGTTTGGTGC
TGGCACCTTCTTCGTTACGGAGTACTCGAGCTCTAAAAAATCGGTCCCCT
TTTGTGCTGTCCGCAAGATGTGTCGTATGGCGCTGGCACCCTCTTCATTA
CGGAGTAATCGAGCTCCAAAAAAGCAGTCCCTTGTGCGTGTGAACACGTA
CATATACGGTACACGTGTGTGTGTATCTATGATATGTACACGTGTCCCGG
TGGTTCTGGCTGGGCCGTGCGCTGGTGCGATGTTGTGTACCCCGCCACAG
TTCGGACGGGAGAACACCAGCTTTCCGACGACCGCATATGCATTCATTTC
CTTTTACCTCGGGGTCTCTGTCGTTGTCTTGACATTTAAAACCGTTCCGA
TCCCTCTATGCAGTACACCTCCATGAGTCCGTATATACTGACAGTCCCGC
GGTGTGCCCGCGCACTGCGCACGGTTGATTGGCTCCTTCTTGCTCGTCAC
GAAAACGCGGGGCGACTCTGCTCTTGTGCTTCTCTCCCCGTGCTGGCACG
GAGACACTCTCTCTCGAGCAAATCGTTCACACGCGGCCACAAAAATGTTT
CGAAAACACCTTCTCTCTGCCTGCTTGCTCCCTGGACGACAACGCGCCCT
TTTTCCCCTCCCTCTCCCTCCCTTAATGTCTCCGCCCTCAACTGCTTTTG
ATGTCCCAGCCATGTCTTTCTTGGAACAGTGCAAAAAATACCCGCCTGAA
TAATTGTTGGCCGACCTCGCAAATCTTAAATCGTTGCAGGGGAGATGCTG
AACCCTTCTGATATTCAGATTGTTTTTCTGCTCGCTTCGCCAAATATTAC
GTCACTGTGTATGGAATACCGTTTGAACCCCATATCTAGTCCTTGCTCTA
GTGTGGGGTAGGTTCCATCTTTGATTCATTGTTTGTTTTAAAAAAACCGC
GTGTGCTCCCTCCCTGGACAACACGCCCCTTCCCCTCCCTCCCTCTCTCT
CCGTTCCTCCCTAATTATCTCCGTTCCTCCCTAAATCTCTCCGTTCCTCC
CTAATTATCTCCGCCCCCGACTGTTTTTTTTGTGTACCATGTCTTCCTCC
GGGCAGTGCAAAAAATCGCGTGCCTGGAGATCGACCTGCCCCCCAAGATG
AAGGCGACGAAGGTGGTGTGGGGGGCCTTAAACGAGAAGCTGATCGTCTC
CTACGCGGACGGGACCATCAGAACGTTTGACCCCTATGACGGCACGGAGC
TGGAATACGCGCAGGTGGGGGGGGGGAGAGGGGAGATTGCCTGCTTCCAC
TGGGGGCCCCCCGGGCTCGTGGTGACTCGGCTGGCCTATTTAGCCGCACG
GGTTGTTTTCCGGTCGTGTGTTTTCGAGCTCGGAAAAATCTGTCACACGT
GGTGGTGGTGGCTTTCTCGAGATTTGTTTTTTTGGGGGTACCGTGGGCGG
GTGGTGGGTGGGTAGTATCTAATGTGTGATTTCATCTTTACGGTTAAAAC
ACTGACATTACCTTGGTTGTGTGTAGCTGCTCGCCTTTTGAGTGTTTGAG
TGGCTGTGGGGACCCGCATCGACGTGCTTGTTGGGTGTCTTGCCTCTGTT
GGTATTCCGGTCGTTGCAGCGTACTTGCTTCAAGTGTTGCGTGTTACCGT
AGGTGACACAAGATACCACACACCCCTGGACCGGCTTTTGGAGCTCCATT
TCATTACTCCGTAACCAAGAGGACGCCTGCCGCACCAAACGACACATTTT
CGGACGGCCCTCGACTAGATCTGTCCAACGCCACCCCTTTTCGGCACTGG
CACTCTTCTTGCGGGGGAGGGATCGAGCTTTGAAAATCTGTTGGCAGGGG
GTGTGGTATCTATCTTCTTGCTGTTTTTTCCACATTGGAGGGTTAGCTCG
CATTATCGAGATTGCGAGATTGCTAATGTAGTTCCAAAAAATGTAGCAAC
TCACGGCCCGTGGTCACAAAAATGCTGGAGCCATAAAAAAAAGGGTCCTA
ACTTAGGAAACACACGCCAAAGGGAAATGTTAGAAGCTCATGGGAGTCGG
CTGTCTCTGTGGGTTAGGTTCCATTTTTGATTAATTGTTTTATTTTCGAA
AGGTATTTGTTTATTTACACCAAAAATACCGAAAAGAGGTACACCTAATT
TCCGGTAAATGTTGATGTGTTTTCAACCATTTAACTGTGTGGTATCTTGT
GTCACCTACGGTATGGTCTGCCAGCCACCTGGCGCCGAGAGAGCGATGAG
GTGCCCCCTCCATCAACACCAACAGCAGCAGCAGTCAAATTACAACCTGG
TGGCCTACGCCCATTGTTACGCAGAGTCGTCCACTGGCTGGACGCTGCGA
TGTTCGACCCTAAATAGATCTTGTGCAAGCAATCCGGGACGGTGAGGAGG
GTTAGTGCGCACCTGCAACAGTCCCCCCGGACCGACTTTTTGACGGGTTG
GACGGGTTTTTTTTCGCCCATCATTGGCATACCTGTCGTCTGCCCCACTG
GCCCCCTTCCTCCACTACGACTAGCTAGACGACCCAACCGGGGTCACACA
GGAGGGGGGGGGGGGGGGGTTGGACCCCCTCCTGCCTGCCTGAGATGTTT
TATCGCGAGCAGGGTTCGTAGACCGCTGACATTTGTTGAACACGTTTGTT
GAAAGTAAGGGTTAAGAACAGAGCACTCTCTTTTGTGTACGCATCATTTG
ACGGTTTCGGAACGTTGTCCCCGCTCATGACAGAGAGGGGGCGCAAGTCG
GCGTTTTATATCGCCCCGTACCGTACACTGTTTCGGCGGAAGAGTGGGGA
TCAACCCAACCATGCGTTTTGAAAGAGAATCAGTTTTATCAAAAATGGAA
CCTTACCCGCATTGAGACGGGACCCCATTGAGAATCAATCGGTATTCCAT
ATAGAATCGTGTTAAGGCCAATTGTTGTGGGAGCAGATTGGAATCCAGGA
TTCGGTGATTGTTTAAATAAAATGTTCTACGTCCAACCTGTAAAAAAGTA
GTTCCAGGGGACTGCTGTGGTACACACGCTGACCCTCTCCCCCCTCACCG
TCCCTGAGGATTGTACCGGCACAAAATCACTATATCTTGGACCGGAAAAG
GGGGGGTTAGTATGTTACATGGTATGCCTACAACAGCAGTCCCTCTGGAA
CGACTTTTTCGCAGACTGGACGTACGTAAGTAGACTGCTGACATTTGTAT
ACATCAATTAAAAATCACCAAGCCGCACAACAGAGCAGTGCGTGTTTTTT
TTTCGTGTCCACAGCGGTGTGTTTGATTGTAGCATGCATATCTTGTGTTT
GTTTGCGCTCGCAAAAAATATTTATATTTTTTTATACGAATTAGTTATAT
ACATTTGTGCTATACATGTGTTTGCTCCTTTGGGTGGCAGATTCACACCA
AGGACATCGCCCGGCTCTGCATCAACAAGGACAGGACGCTGCTGCTCACG
TGCTCGAAGGACTACACGGCAAAACTCCTGGACGCAAACACGCTCACGGT
GAGCGTGTGGTGTGTGCCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13675:770..4691-

>mRNA_L-elsbetiae_contig13675.2794.1 ID=mRNA_L-elsbetiae_contig13675.2794.1|Name=mRNA_L-elsbetiae_contig13675.2794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig13675:770..4691- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTCCGCGTCCGCCGACGCCTCGGCCCGCATGTGGGACGTGCAGAC
AGGGCGGGAGCTGGTGGTGTACAACCACAATGGGCCGGTGAGGTCGGTGG
CCTTCGCGGAGGGGGGCCAGCGGTTCGCCACGGTGTCGGACCCCTTCACG
GACAGCCCCGGTTTCATCTCGGTGTTCGAGACCCCGGACGACGTGCCGAC
CGATCAATATGATTTCCGCGTCCGCCGACGCCTCGGCCCGCATGTGGGAC
GTGCAGACAGGGCGGGAGCTGGTGGTGTACAACCACAATGGGCCGGTGAG
GTCGGTGGCCTTCGCGGAGGGGGGCCAGCGGTTCGCCACGGTGTCGGACC
CCTTCACGGACAGCCCCGGTTTCATCTCGGTGTTCGAGACCCCGGACGAC
GTGCCGACCGATCAATTGCAAAAAATCGCGTGCCTGGAGATCGACCTGCC
CCCCAAGATGAAGGCGACGAAGGTGGTGTGGGGGGCCTTAAACGAGAAGC
TGATCGTCTCCTACGCGGACGGGACCATCAGAACGTTTGACCCCTATGAC
GGCACGGAGCTGGAATACGCGCAGGTGGGGGGGGGGAGAGGGGAGATTGC
CTGCTTCCACTGGGGGCCCCCCGGGCTCTGCAAAAAATCGCGTGCCTGGA
GATCGACCTGCCCCCCAAGATGAAGGCGACGAAGGTGGTGTGGGGGGCCT
TAAACGAGAAGCTGATCGTCTCCTACGCGGACGGGACCATCAGAACGTTT
GACCCCTATGACGGCACGGAGCTGGAATACGCGCAGGTGGGGGGGGGGAG
AGGGGAGATTGCCTGCTTCCACTGGGGGCCCCCCGGGCTCATTCACACCA
AGGACATCGCCCGGCTCTGCATCAACAAGGACAGGACGCTGCTGCTCACG
TGCTCGAAGGACTACACGGCAAAACTCCTGGACGCAAACACGCTCACGGT
GAGCGTGTGGTGTGTGCCCTGAATTCACACCAAGGACATCGCCCGGCTCT
GCATCAACAAGGACAGGACGCTGCTGCTCACGTGCTCGAAGGACTACACG
GCAAAACTCCTGGACGCAAACACGCTCACGGTGAGCGTGTGGTGTGTGCC
CTGA
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