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Homology
BLAST of mRNA_L-elsbetiae_contig1367.2792.1 vs. uniprot
Match: D7FTX7_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX7_ECTSI) HSP 1 Score: 236 bits (602), Expect = 4.680e-66 Identity = 230/410 (56.10%), Postives = 267/410 (65.12%), Query Frame = 2
Query: 398 MGAVLAGTCGPRNREDQVFRAAEC------EPLPDLDAWVNHSTTPDLPAIVADMHRNSSRESWLKFLGSGLLEASSDGNLLAVKQLLAGGAPRHARDAEGRTPLHRASIAGHAHVVGFLLHEEGDXXXXXXXXXXXXXXXX----PRLVWQASKEGPVLVPSVSLQKRVTVDARDDLRSCPAHLAAARGHAHVVRLLVQHGADVSSVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEATTTISGXXXXXXXXXXXXXXXXXXXXXXXXS-EMAVDTDERTPRAMVGERVSDEERVVDPGCSEREERIHRLLDDAPKDRLWRRRXXXPLXXXXXXXPAYDDS-----ALDDGLDRPLAGVLAGLQEGIVRIIVSYL 1579
MGA L G+CG R +E +EC E P+LDAW++HST P L +IV + ++ SSRE W KFLG+GLL+A+SDGNL V+QLLA GAP HARD EG TPLHRAS+AGHA V LL GD P L WQAS EGPVLVPSVSL KR T+DARD SCP HLAAA GHA VV++L+QHGADVS N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX+ E AVD D+ TP MV ER+++E++ DP + E I R+L DAP+DRLWRRR PL PA+D +D G + + ++ +EGI+R IVSYL
Sbjct: 1 MGAALGGSCGGRTKE---VAGSECDGPPPGEQPPELDAWIDHSTWPGLRSIVTEAYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGVAEQLL-SSGDGRAPPLGGASPSSSGMVPEPPSLKWQASMEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPLHTAAAGLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADERAVDIDDLTPENMVCERMTEEQKAADPTIAPVGETICRMLADAPQDRLWRRRRLLPLLHWRQPPPAFDTGPGTAVTVDAGSGQSIFELVVCEEEGIMRNIVSYL 406
BLAST of mRNA_L-elsbetiae_contig1367.2792.1 vs. uniprot
Match: A0A813LKL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LKL6_POLGL) HSP 1 Score: 60.8 bits (146), Expect = 3.410e-6 Identity = 46/129 (35.66%), Postives = 60/129 (46.51%), Query Frame = 2
Query: 593 LLEASSDGNLLAVKQLLAGGAPRHARDAEGRTPLHRASIAGHAHVVGFLLHEEGDXXXXXXXXXXXXXXXXPRLVWQASKEGPVLVPSVSLQKRVTVDARDDLRSCPAHLAAARGHAHVVRLLVQHGAD 979
L +AS G+ V++LL+ A + D +GR PLH A+ AG V+ LL D WQ E L+ L R V+A D+ P AA++GHA VVRLLVQ GAD
Sbjct: 59 LTDASMSGDQARVQELLSENADPNMSDEQGRLPLHAATFAGATAVLSSLLDARADANLREQGDGNRSLQIA---AWQGHLEATELL----LDNRADVEAVDERGWSPLCSAASQGHASVVRLLVQKGAD 180
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 239.2 |
Seed ortholog evalue | 3.3e-60 |
Seed eggNOG ortholog | 2880.D7FTX7 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | response to abiotic stimulus |
EggNOG OGs | COG0666@1,KOG4177@2759 |
COG Functional cat. | G |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 3 |
Model size | 2651 |
Cds size | 1185 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815531.883269-UTR-L-elsbetiae_contig1367:21332..22385 | 1622815531.883269-UTR-L-elsbetiae_contig1367:21332..22385 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1367 21333..22385 - |
1691682944.0390773-UTR-L-elsbetiae_contig1367:21332..22385 | 1691682944.0390773-UTR-L-elsbetiae_contig1367:21332..22385 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1367 21333..22385 - |
1622815531.8934398-UTR-L-elsbetiae_contig1367:22829..22845 | 1622815531.8934398-UTR-L-elsbetiae_contig1367:22829..22845 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1367 22830..22845 - |
1691682944.0490046-UTR-L-elsbetiae_contig1367:22829..22845 | 1691682944.0490046-UTR-L-elsbetiae_contig1367:22829..22845 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1367 22830..22845 - |
1622815531.9312563-UTR-L-elsbetiae_contig1367:24294..24691 | 1622815531.9312563-UTR-L-elsbetiae_contig1367:24294..24691 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1367 24295..24691 - |
1691682944.0842898-UTR-L-elsbetiae_contig1367:24294..24691 | 1691682944.0842898-UTR-L-elsbetiae_contig1367:24294..24691 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1367 24295..24691 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815531.903477-CDS-L-elsbetiae_contig1367:22845..23985 | 1622815531.903477-CDS-L-elsbetiae_contig1367:22845..23985 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1367 22846..23985 - |
1691682944.0597577-CDS-L-elsbetiae_contig1367:22845..23985 | 1691682944.0597577-CDS-L-elsbetiae_contig1367:22845..23985 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1367 22846..23985 - |
1622815531.9150832-CDS-L-elsbetiae_contig1367:24249..24294 | 1622815531.9150832-CDS-L-elsbetiae_contig1367:24249..24294 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1367 24250..24294 - |
1691682944.0736086-CDS-L-elsbetiae_contig1367:24249..24294 | 1691682944.0736086-CDS-L-elsbetiae_contig1367:24249..24294 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1367 24250..24294 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1367.2792.1 >prot_L-elsbetiae_contig1367.2792.1 ID=prot_L-elsbetiae_contig1367.2792.1|Name=mRNA_L-elsbetiae_contig1367.2792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=395bp
MGAVLAGTCGPRNREDQVFRAAECEPLPDLDAWVNHSTTPDLPAIVADMH RNSSRESWLKFLGSGLLEASSDGNLLAVKQLLAGGAPRHARDAEGRTPLH RASIAGHAHVVGFLLHEEGDDESPPPGASPAGVPPPPRLVWQASKEGPVL VPSVSLQKRVTVDARDDLRSCPAHLAAARGHAHVVRLLVQHGADVSSVNG LLQTPLHAAAAGGSSESMHVLLGAGGDVMARDNAGRAPLHVAASLGHPSA VSTLVEGGADTEATTTISGRTALHEACASLRPETVKQLLDRGASEMAVDT DERTPRAMVGERVSDEERVVDPGCSEREERIHRLLDDAPKDRLWRRRRLL PLLLRRQPPPAYDDSALDDGLDRPLAGVLAGLQEGIVRIIVSYL* back to topmRNA from alignment at L-elsbetiae_contig1367:21333..24691- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1367.2792.1 ID=mRNA_L-elsbetiae_contig1367.2792.1|Name=mRNA_L-elsbetiae_contig1367.2792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3359bp|location=Sequence derived from alignment at L-elsbetiae_contig1367:21333..24691- (Laminarionema elsbetiae ELsaHSoW15) GCTGCTGCTGCTGCATCGTTTCTGCCGCTCTCTGCGTCGTCGGCCTTGCG
CCAGGCCTCATAGTAAACCGCTGCCGTCGTTTGAACTCGAGCTGAATATA
TGTAGCCGGCGGCTTGCAAAAGGAGGGTATCACGGGCAACGCCCCTGCTG
CAAAATGGATGCTGCTTGGAAATGAACCTACCACTGCTACCGTCAGGTAG
GCCGCTACTGCCATCGCCGCGAAGAGCAGCCCTGTTGTCTCTGTCCGTCC
GGGGGCTACGCGCACGTACCAAGGCCAAACCAATCACGGAGGGCGGTTTT
TGGTTCCAGAATTCACGAGACCCCCGGGACAGCTGCGGAGTTTTAGGAGT
TTTTGTCTGTCCATGTGCGCCACGCTCTCCCTAGTGCCGGGAAGTTAATG
GGGGCAGTGCTAGCTGGAACATGTGGGCCAAGGAATAGAGAGGTGCGTGC
GTTGCTTGAAAGGGGCACGCGCCAGAAAAAGAGAGTGCAGTGTGCAGTAG
CAGCATGTAGTCTACATCACTGTTGTGTGTTTCCCCTCACGCACGAGGGG
CGTGCACCTGAGAACTCTGCTTTAAAACCCAGAGGGTGCTTGATCACGGC
AGTGGAAGGTTCGGCCATACGATAGCGCACCACCAGTATCTTGTCCGGTG
CCTGCGTGTTGTCAACTCCGCGGGTGCAACCCACCGCTCCTTTCATCACT
CCGCAGGACCAGGTTTTCCGGGCCGCCGAGTGCGAACCGCTGCCGGATTT
GGATGCATGGGTCAACCACAGCACCACGCCGGACCTTCCCGCCATCGTGG
CCGACATGCACCGGAACTCCAGCCGCGAGAGCTGGTTGAAGTTCCTTGGG
TCAGGCCTGCTAGAGGCGTCATCAGACGGCAACCTTTTGGCCGTCAAGCA
GCTCCTCGCCGGCGGAGCGCCCCGCCACGCCCGTGACGCGGAAGGACGCA
CCCCTCTGCACCGCGCTTCGATCGCGGGGCACGCGCACGTAGTTGGGTTT
CTTCTCCACGAAGAGGGAGACGACGAATCGCCCCCTCCCGGCGCGAGCCC
TGCTGGCGTGCCCCCCCCGCCGCGGCTCGTGTGGCAGGCCAGCAAAGAAG
GCCCGGTCCTGGTGCCCTCCGTGTCTCTCCAGAAGCGGGTCACGGTGGAT
GCCAGGGACGACTTGCGCTCCTGCCCAGCGCACCTGGCCGCGGCGCGCGG
GCACGCGCACGTAGTGCGGCTGCTGGTCCAGCACGGCGCCGACGTCTCCA
GCGTGAACGGCCTGCTGCAGACGCCCCTCCACGCCGCGGCCGCCGGGGGC
TCAAGCGAGAGCATGCACGTTTTGCTCGGCGCTGGCGGGGACGTGATGGC
GAGGGACAACGCCGGCAGGGCGCCCCTGCACGTTGCGGCCTCCTTGGGGC
ACCCGTCCGCGGTGTCGACCCTGGTGGAGGGCGGGGCAGATACGGAGGCC
ACGACAACCATCAGCGGCCGGACCGCTCTGCACGAGGCCTGCGCGAGCCT
GAGACCAGAAACCGTGAAGCAGCTGCTCGATCGCGGCGCGAGTGAGATGG
CGGTCGACACGGACGAACGGACCCCGAGAGCCATGGTCGGAGAGAGGGTT
TCAGACGAGGAGAGGGTAGTAGACCCTGGCTGCTCCGAGAGGGAGGAGCG
GATCCATCGCTTGTTGGACGACGCCCCGAAAGACAGGCTGTGGCGGCGCC
GGCGCCTGCTGCCGCTGCTGCTCCGGCGACAACCGCCGCCTGCGTACGAC
GACTCGGCGCTGGATGACGGTTTGGATCGCCCTCTGGCGGGCGTTCTAGC
AGGCCTGCAAGAGGGCATCGTGCGCATCATCGTGTCCTATTTGTGACGGA
TTCCGTCCGAAGGTGGGCGAGCGGTACAAGTTGTGATGCGCTGGTTTTGG
AAGAGCGGAGGGCAGAAATTACCTGAAAGTTACGTACAAGAGTGGGCGGC
AGGGCAATACGTTCAGCCGTGCGCCAGGCCACGGGGGCTTGGTGCACGGT
TTGGTGGTGTGTTTAGTGCTGGTTGGCTACTCAGAACGTTTGTCCGCCGT
CGCCTCGCTTGAACTGCCGCATGGAAGATGCGAAGAACTTATTTCGAGGG
TGTCTTTTGTCTTTTGGGGGTTCGAGTAGCCAAGCCTTGGATTGGCGACG
CTCTCTTGGTTTCCTGTTCTACGCTTTACTGCGTTTGGGGGGTTATCATG
GGAGACCGCACTGAAACTCTCGTCTCGTTTTGACGACAACCACCATTCCG
TTCGCGATGCGTGTGATGTTCCTCTTGAAACCCTGTGTCCTCTTTTGTTC
GGCCAGGAATGTGTGCCATCGCAAGCGTTGGACGGGCGTTTCATGATGTG
TGGCAAGAGAGGAAACTCTGTGCTGATTATTCTCCTTCAAGTGCTGGTAT
TCTGTGTGCTGGCGGCGTGTACGTCGTGGTGCAGCTGCCTGTGGCAAACG
AGTGGGCCGTCCTGCGCGCGGCCCCGCACTGGTGATCGGTGCAGAACCTT
CTGTATTTGACCGCGCGGTGCATTTATTTTTTCGTGCATACATACCGTAA
TCATGCGGAGGTTCGCACCCCCGTGTTAGCGTTTTATTATAGCGTATTTC
TCCACAACCAGAAGGGTACCGCTGCCGAAAAGGGTGGTTTTCGAAACGTC
TCATCGGGGGCTTTTCAGAGAGGTATCAGTTAGTGTTCGCACCCTCCTGA
TTGTTGAGAAATACGCTTTAGAAAAATGCTAACACGGGGGTGCGAACCTT
CGCATGATTAAGGTACTTGGAAGTACATATGTATGGTACATGAGAAGGAG
ATCCCCCCCCCCCCCCGCATAAATAATTTTTTTGTGTATGCTTTGTATTT
GTATACTAAACTGGACATAATAGCAAGCTGTTCCCGCCCCCCATAAGTTC
GTTTGTATATCAATATAGTTTCGTTCTGTAACATCACACATAGCTCACTA
TCGTAGCTGCGCGGTCAGTGGGTGTATCAGCATGTAGTATGGGTAGCGTT
GTTCGTATGTATGTATGTTCCCAATCGACGGACGTATCAGGATTGTGTAA
CGAAAATGTAGTTATATAGTCTAGACTTTTAAGTTGTTTTACGGAGAGTG
GAATCTAGGATCGTTGCGAATAGTGTGTGAGAGTGCGACACCTCAAATAC
CTAGATTTTTTCATCTGACCTTTGACGATGCGGGGCGCTTTCTCTCAGAA
ACCCCAACTTTGTGGAAAGCTCTGATTGGCTTCGGTGTGTGGTCGTGCGA
CTGTGCGTCAAGTATTGTAACTGCTTGGCGCCGGGTGCGCGCTCTAAATT
GTCGAGATTATTAATTTTGCTCGCTGTTGCCCGTCTTTTTTTGGTATTTT
TGAAAGGCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1367:21333..24691- >mRNA_L-elsbetiae_contig1367.2792.1 ID=mRNA_L-elsbetiae_contig1367.2792.1|Name=mRNA_L-elsbetiae_contig1367.2792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2370bp|location=Sequence derived from alignment at L-elsbetiae_contig1367:21333..24691- (Laminarionema elsbetiae ELsaHSoW15) ATGGGGGCAGTGCTAGCTGGAACATGTGGGCCAAGGAATAGAGAGATGGG GGCAGTGCTAGCTGGAACATGTGGGCCAAGGAATAGAGAGGACCAGGTTT TCCGGGCCGCCGAGTGCGAACCGCTGCCGGATTTGGATGCATGGGTCAAC CACAGCACCACGCCGGACCTTCCCGCCATCGTGGCCGACATGCACCGGAA CTCCAGCCGCGAGAGCTGGTTGAAGTTCCTTGGGTCAGGCCTGCTAGAGG CGTCATCAGACGGCAACCTTTTGGCCGTCAAGCAGCTCCTCGCCGGCGGA GCGCCCCGCCACGCCCGTGACGCGGAAGGACGCACCCCTCTGCACCGCGC TTCGATCGCGGGGCACGCGCACGTAGTTGGGTTTCTTCTCCACGAAGAGG GAGACGACGAATCGCCCCCTCCCGGCGCGAGCCCTGCTGGCGTGCCCCCC CCGCCGCGGCTCGTGTGGCAGGCCAGCAAAGAAGGCCCGGTCCTGGTGCC CTCCGTGTCTCTCCAGAAGCGGGTCACGGTGGATGCCAGGGACGACTTGC GCTCCTGCCCAGCGCACCTGGCCGCGGCGCGCGGGCACGCGCACGTAGTG CGGCTGCTGGTCCAGCACGGCGCCGACGTCTCCAGCGTGAACGGCCTGCT GCAGACGCCCCTCCACGCCGCGGCCGCCGGGGGCTCAAGCGAGAGCATGC ACGTTTTGCTCGGCGCTGGCGGGGACGTGATGGCGAGGGACAACGCCGGC AGGGCGCCCCTGCACGTTGCGGCCTCCTTGGGGCACCCGTCCGCGGTGTC GACCCTGGTGGAGGGCGGGGCAGATACGGAGGCCACGACAACCATCAGCG GCCGGACCGCTCTGCACGAGGCCTGCGCGAGCCTGAGACCAGAAACCGTG AAGCAGCTGCTCGATCGCGGCGCGAGTGAGATGGCGGTCGACACGGACGA ACGGACCCCGAGAGCCATGGTCGGAGAGAGGGTTTCAGACGAGGAGAGGG TAGTAGACCCTGGCTGCTCCGAGAGGGAGGAGCGGATCCATCGCTTGTTG GACGACGCCCCGAAAGACAGGCTGTGGCGGCGCCGGCGCCTGCTGCCGCT GCTGCTCCGGCGACAACCGCCGCCTGCGTACGACGACTCGGCGCTGGATG ACGGTTTGGATCGCCCTCTGGCGGGCGTTCTAGCAGGCCTGCAAGAGGGC ATCGTGCGCATCATCGTGTCCTATTTGTGAGACCAGGTTTTCCGGGCCGC CGAGTGCGAACCGCTGCCGGATTTGGATGCATGGGTCAACCACAGCACCA CGCCGGACCTTCCCGCCATCGTGGCCGACATGCACCGGAACTCCAGCCGC GAGAGCTGGTTGAAGTTCCTTGGGTCAGGCCTGCTAGAGGCGTCATCAGA CGGCAACCTTTTGGCCGTCAAGCAGCTCCTCGCCGGCGGAGCGCCCCGCC ACGCCCGTGACGCGGAAGGACGCACCCCTCTGCACCGCGCTTCGATCGCG GGGCACGCGCACGTAGTTGGGTTTCTTCTCCACGAAGAGGGAGACGACGA ATCGCCCCCTCCCGGCGCGAGCCCTGCTGGCGTGCCCCCCCCGCCGCGGC TCGTGTGGCAGGCCAGCAAAGAAGGCCCGGTCCTGGTGCCCTCCGTGTCT CTCCAGAAGCGGGTCACGGTGGATGCCAGGGACGACTTGCGCTCCTGCCC AGCGCACCTGGCCGCGGCGCGCGGGCACGCGCACGTAGTGCGGCTGCTGG TCCAGCACGGCGCCGACGTCTCCAGCGTGAACGGCCTGCTGCAGACGCCC CTCCACGCCGCGGCCGCCGGGGGCTCAAGCGAGAGCATGCACGTTTTGCT CGGCGCTGGCGGGGACGTGATGGCGAGGGACAACGCCGGCAGGGCGCCCC TGCACGTTGCGGCCTCCTTGGGGCACCCGTCCGCGGTGTCGACCCTGGTG GAGGGCGGGGCAGATACGGAGGCCACGACAACCATCAGCGGCCGGACCGC TCTGCACGAGGCCTGCGCGAGCCTGAGACCAGAAACCGTGAAGCAGCTGC TCGATCGCGGCGCGAGTGAGATGGCGGTCGACACGGACGAACGGACCCCG AGAGCCATGGTCGGAGAGAGGGTTTCAGACGAGGAGAGGGTAGTAGACCC TGGCTGCTCCGAGAGGGAGGAGCGGATCCATCGCTTGTTGGACGACGCCC CGAAAGACAGGCTGTGGCGGCGCCGGCGCCTGCTGCCGCTGCTGCTCCGG CGACAACCGCCGCCTGCGTACGACGACTCGGCGCTGGATGACGGTTTGGA TCGCCCTCTGGCGGGCGTTCTAGCAGGCCTGCAAGAGGGCATCGTGCGCA TCATCGTGTCCTATTTGTGA back to top
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