mRNA_L-elsbetiae_contig1366.2785.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1366.2785.1
Unique NamemRNA_L-elsbetiae_contig1366.2785.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1366.2785.1 vs. uniprot
Match: A0A6H5K507_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K507_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.140e-34
Identity = 168/474 (35.44%), Postives = 211/474 (44.51%), Query Frame = 1 
Query:  295 GASARNDRTGSASSPRQILVKVPCVSTSNGXXXXXXXXXXXXXGVPYRLAWNHEVRKG--------------------------SGATGVCSSAVDSSEENSVVQGDAGSFRPNDKAPGVETAAVAVAAVEAKRHGRPNAAGAGIMVQLPRPAEGDRVSSTTPGDNSGFGCALFSASDSEPKQXXXXXXXRLVVEENRPSTSRVIANLRASVACDVRPSSASAYSSSFFSTAPVLTELAGSGAL-PVSNPGQMQWGVSIPGRTALSPDVR---PYDDHEDGLVRPNEQSRPQSAAASSVASRLSLASGGAGGEGRRHGATATSAKKVTTSVNLFEHDAVCGKAVAATRRQPLDRKRGGTANRVG-NQQQNSSRRPKPAA-GTSSAERRGRAMRAPTGYSFFPSSPPAVENVAGRDLPFDG-GHAQPFSPGEPMKGGVSEWEGPSSFYSDAADEARGMAGYALDSPGTWREAVGY 1617
            G   R +R G+ SSPRQILVKVPCV TS                 PYRLAWN EV                              GA G C      + +++  +GDA            +  A A A + +   GR N     +MVQLPRP EGD  SSTTPG   G G  + +   S             ++EE RP+TSRVIA LRASVA +    S +A        AP  T  AG   L P++         +IPGR   S   R   P+D H+   V    + RPQSAA  S+A++ S   G      + HG  +   +            A  G A AA  R      RG TA +   N Q  +SRRP+ A  G +  +RR R ++A   YSFFPS+    EN AG +  +D  G       G  + G VSEWE  +S  S    EA   AGYALDSPGTWREAVG+
Sbjct:   54 GEVVRGNR-GAPSSPRQILVKVPCVETSR-TACGDAEKKCKRGSAPYRLAWNDEVTTAVAYADNPYVDARNTAHGHDDGKALAEDGAGGCCHGGGQVANKSAKGKGDA--------TRAADATAAAAAGLVSPAPGRNNMTA--VMVQLPRPLEGDEASSTTPGGR-GVGFDVGNGRGSNSVLSASDSGRLSLLEEARPTTSRVIAKLRASVAREACQGSTAA------KLAPGATAAAGPACLLPLTVLEVRPGDAAIPGRRPPSSPGRRAGPHDGHKRS-VGTRGRPRPQSAAGLSLAAQTSRRIGV-----QHHGTASAGGRTRENRRGFVNAAATLGPAAAAITR------RGATACKTDENVQGANSRRPQSAGPGENIGDRRRRDVKAQDNYSFFPSASSTGEN-AGTECGYDEMGVRMILGGGVMLPGDVSEWE--ASLCSST--EATSRAGYALDSPGTWREAVGF 491
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1366.2785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K507_9PHAE1.140e-3435.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1366contigL-elsbetiae_contig1366:11701..13595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_005720.1
Exons2
Model size1620
Cds size1620
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.2859206-CDS-L-elsbetiae_contig1366:11700..131231622815531.2859206-CDS-L-elsbetiae_contig1366:11700..13123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1366 11701..13123 -
1691682943.6890388-CDS-L-elsbetiae_contig1366:11700..131231691682943.6890388-CDS-L-elsbetiae_contig1366:11700..13123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1366 11701..13123 -
1622815531.296654-CDS-L-elsbetiae_contig1366:13398..135951622815531.296654-CDS-L-elsbetiae_contig1366:13398..13595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1366 13399..13595 -
1691682943.7036273-CDS-L-elsbetiae_contig1366:13398..135951691682943.7036273-CDS-L-elsbetiae_contig1366:13398..13595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1366 13399..13595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1366.2785.1prot_L-elsbetiae_contig1366.2785.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1366 11701..13595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1366.2785.1

>prot_L-elsbetiae_contig1366.2785.1 ID=prot_L-elsbetiae_contig1366.2785.1|Name=mRNA_L-elsbetiae_contig1366.2785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=540bp
EDRRTIAPARPHSAAGGMGRRSGGGVQLAGAGKTWSREISERTAPPRPTS
APGGGKSHPAQGEEGLGRGGCVRQTISRRGQRRGSRDGQVRVLATWSYGA
SARNDRTGSASSPRQILVKVPCVSTSNGGGGGATKSKRRGGGVPYRLAWN
HEVRKGSGATGVCSSAVDSSEENSVVQGDAGSFRPNDKAPGVETAAVAVA
AVEAKRHGRPNAAGAGIMVQLPRPAEGDRVSSTTPGDNSGFGCALFSASD
SEPKQQQQQQQHRLVVEENRPSTSRVIANLRASVACDVRPSSASAYSSSF
FSTAPVLTELAGSGALPVSNPGQMQWGVSIPGRTALSPDVRPYDDHEDGL
VRPNEQSRPQSAAASSVASRLSLASGGAGGEGRRHGATATSAKKVTTSVN
LFEHDAVCGKAVAATRRQPLDRKRGGTANRVGNQQQNSSRRPKPAAGTSS
AERRGRAMRAPTGYSFFPSSPPAVENVAGRDLPFDGGHAQPFSPGEPMKG
GVSEWEGPSSFYSDAADEARGMAGYALDSPGTWREAVGY*
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mRNA from alignment at L-elsbetiae_contig1366:11701..13595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1366.2785.1 ID=mRNA_L-elsbetiae_contig1366.2785.1|Name=mRNA_L-elsbetiae_contig1366.2785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1895bp|location=Sequence derived from alignment at L-elsbetiae_contig1366:11701..13595- (Laminarionema elsbetiae ELsaHSoW15)
GAAGATAGGAGAACAATTGCGCCTGCGAGGCCCCACTCAGCAGCGGGGGG
CATGGGTAGACGATCTGGCGGCGGGGTCCAACTGGCCGGGGCTGGGAAAA
CGTGGAGTCGAGAGATCTCCGAGCGCACAGCCCCTCCAAGGCCAACCAGC
GCACCGGGAGGGGGGAAATCACATCCAGCACAGGGAGAAGAAGGTTTGTG
GGATGTTTGTCTGTCACCATGATTTTGACAATACCATAATCAAATAGGCA
ACCGCGCCTGCTGTTCCATGGCGAAAGGGGCAATCCAACATAGTGCCAGG
TTTTACCCGGTTTTTGAAATAGCGGTCACAGGAATGGCGGCGCAGGAGAT
GGAAACACAACTGCCTCTTGGTCTCCGGGAACGATTCGCCTATCTGTTGA
AAATGAACGGCTTCCCTTGTTTGGGCATCTTGCAGGGTACACTCGACGAG
GCGAGGCAAGATCAAGAGGAAGAGGAAGAGGAGGGTGTGTGCGGCAAACG
ATATCTAGGAGAGGGCAGCGGCGCGGAAGCCGGGACGGTCAGGTCCGCGT
TCTAGCGACGTGGTCATACGGAGCTTCTGCGCGAAACGATAGGACTGGCA
GCGCTTCTTCCCCGCGGCAGATTCTGGTAAAAGTGCCGTGCGTGAGCACG
AGCAACGGTGGTGGAGGTGGTGCAACTAAAAGTAAAAGGCGTGGAGGGGG
CGTCCCGTACCGACTCGCCTGGAACCACGAAGTCAGAAAAGGGTCCGGTG
CCACCGGTGTCTGCAGCAGTGCTGTTGACAGCAGCGAGGAGAACTCTGTT
GTGCAAGGGGATGCAGGGAGTTTCCGGCCGAATGATAAAGCGCCAGGCGT
GGAGACGGCGGCGGTGGCGGTGGCAGCGGTGGAGGCAAAACGACACGGAC
GACCAAACGCAGCAGGGGCGGGGATAATGGTGCAGCTCCCCCGGCCTGCT
GAAGGTGATAGGGTGTCATCGACCACACCTGGCGACAACAGCGGTTTCGG
CTGCGCACTTTTTTCGGCCTCGGACAGTGAACCGAAGCAGCAGCAGCAAC
AACAGCAGCATCGTCTTGTTGTCGAGGAGAACAGGCCTAGCACGAGTCGG
GTCATCGCAAACCTTCGAGCCTCGGTCGCCTGCGATGTGCGCCCGTCATC
GGCTAGCGCCTACAGTTCTTCCTTCTTTTCGACCGCGCCTGTATTGACAG
AGTTGGCAGGGTCGGGTGCGCTTCCTGTATCTAATCCTGGGCAGATGCAG
TGGGGTGTCTCGATTCCCGGAAGAACCGCATTATCGCCCGACGTGAGACC
GTACGATGATCACGAGGACGGCCTGGTTAGACCGAATGAGCAATCTCGAC
CACAGTCAGCGGCAGCCTCGAGCGTAGCAAGCCGGCTCTCTCTTGCCTCG
GGAGGAGCAGGCGGAGAAGGTCGGCGCCACGGCGCCACTGCAACAAGCGC
CAAGAAAGTGACAACGAGCGTTAATTTGTTCGAACACGATGCAGTTTGTG
GGAAGGCGGTAGCAGCGACAAGACGGCAGCCTTTGGATAGGAAACGAGGA
GGAACGGCAAACAGGGTCGGCAATCAGCAGCAGAACAGCTCGCGGCGCCC
AAAGCCCGCCGCTGGGACAAGTAGTGCCGAGAGGCGAGGGCGAGCCATGA
GGGCCCCGACGGGCTATTCCTTTTTCCCTTCGTCTCCTCCGGCCGTTGAA
AATGTTGCTGGGCGTGATCTGCCCTTTGATGGCGGCCATGCCCAGCCGTT
CTCGCCAGGGGAACCAATGAAGGGCGGTGTTAGCGAATGGGAAGGGCCGT
CTTCTTTTTATTCCGACGCTGCTGACGAGGCGAGGGGTATGGCCGGGTAT
GCCTTAGACTCGCCAGGAACCTGGAGAGAAGCCGTCGGGTATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1366:11701..13595-

>mRNA_L-elsbetiae_contig1366.2785.1 ID=mRNA_L-elsbetiae_contig1366.2785.1|Name=mRNA_L-elsbetiae_contig1366.2785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3240bp|location=Sequence derived from alignment at L-elsbetiae_contig1366:11701..13595- (Laminarionema elsbetiae ELsaHSoW15)
GAAGATAGGAGAACAATTGCGCCTGCGAGGCCCCACTCAGCAGCGGGGGG
CATGGGTAGACGATCTGGCGGCGGGGTCCAACTGGCCGGGGCTGGGAAAA
CGTGGAGTCGAGAGATCTCCGAGCGCACAGCCCCTCCAAGGCCAACCAGC
GCACCGGGAGGGGGGAAATCACATCCAGCACAGGGAGAAGAAGGTTTGAA
GATAGGAGAACAATTGCGCCTGCGAGGCCCCACTCAGCAGCGGGGGGCAT
GGGTAGACGATCTGGCGGCGGGGTCCAACTGGCCGGGGCTGGGAAAACGT
GGAGTCGAGAGATCTCCGAGCGCACAGCCCCTCCAAGGCCAACCAGCGCA
CCGGGAGGGGGGAAATCACATCCAGCACAGGGAGAAGAAGGTTTAGGAAG
AGGAGGGTGTGTGCGGCAAACGATATCTAGGAGAGGGCAGCGGCGCGGAA
GCCGGGACGGTCAGGTCCGCGTTCTAGCGACGTGGTCATACGGAGCTTCT
GCGCGAAACGATAGGACTGGCAGCGCTTCTTCCCCGCGGCAGATTCTGGT
AAAAGTGCCGTGCGTGAGCACGAGCAACGGTGGTGGAGGTGGTGCAACTA
AAAGTAAAAGGCGTGGAGGGGGCGTCCCGTACCGACTCGCCTGGAACCAC
GAAGTCAGAAAAGGGTCCGGTGCCACCGGTGTCTGCAGCAGTGCTGTTGA
CAGCAGCGAGGAGAACTCTGTTGTGCAAGGGGATGCAGGGAGTTTCCGGC
CGAATGATAAAGCGCCAGGCGTGGAGACGGCGGCGGTGGCGGTGGCAGCG
GTGGAGGCAAAACGACACGGACGACCAAACGCAGCAGGGGCGGGGATAAT
GGTGCAGCTCCCCCGGCCTGCTGAAGGTGATAGGGTGTCATCGACCACAC
CTGGCGACAACAGCGGTTTCGGCTGCGCACTTTTTTCGGCCTCGGACAGT
GAACCGAAGCAGCAGCAGCAACAACAGCAGCATCGTCTTGTTGTCGAGGA
GAACAGGCCTAGCACGAGTCGGGTCATCGCAAACCTTCGAGCCTCGGTCG
CCTGCGATGTGCGCCCGTCATCGGCTAGCGCCTACAGTTCTTCCTTCTTT
TCGACCGCGCCTGTATTGACAGAGTTGGCAGGGTCGGGTGCGCTTCCTGT
ATCTAATCCTGGGCAGATGCAGTGGGGTGTCTCGATTCCCGGAAGAACCG
CATTATCGCCCGACGTGAGACCGTACGATGATCACGAGGACGGCCTGGTT
AGACCGAATGAGCAATCTCGACCACAGTCAGCGGCAGCCTCGAGCGTAGC
AAGCCGGCTCTCTCTTGCCTCGGGAGGAGCAGGCGGAGAAGGTCGGCGCC
ACGGCGCCACTGCAACAAGCGCCAAGAAAGTGACAACGAGCGTTAATTTG
TTCGAACACGATGCAGTTTGTGGGAAGGCGGTAGCAGCGACAAGACGGCA
GCCTTTGGATAGGAAACGAGGAGGAACGGCAAACAGGGTCGGCAATCAGC
AGCAGAACAGCTCGCGGCGCCCAAAGCCCGCCGCTGGGACAAGTAGTGCC
GAGAGGCGAGGGCGAGCCATGAGGGCCCCGACGGGCTATTCCTTTTTCCC
TTCGTCTCCTCCGGCCGTTGAAAATGTTGCTGGGCGTGATCTGCCCTTTG
ATGGCGGCCATGCCCAGCCGTTCTCGCCAGGGGAACCAATGAAGGGCGGT
GTTAGCGAATGGGAAGGGCCGTCTTCTTTTTATTCCGACGCTGCTGACGA
GGCGAGGGGTATGGCCGGGTATGCCTTAGACTCGCCAGGAACCTGGAGAG
AAGCCGTCGGGTATTAAAGGAAGAGGAGGGTGTGTGCGGCAAACGATATC
TAGGAGAGGGCAGCGGCGCGGAAGCCGGGACGGTCAGGTCCGCGTTCTAG
CGACGTGGTCATACGGAGCTTCTGCGCGAAACGATAGGACTGGCAGCGCT
TCTTCCCCGCGGCAGATTCTGGTAAAAGTGCCGTGCGTGAGCACGAGCAA
CGGTGGTGGAGGTGGTGCAACTAAAAGTAAAAGGCGTGGAGGGGGCGTCC
CGTACCGACTCGCCTGGAACCACGAAGTCAGAAAAGGGTCCGGTGCCACC
GGTGTCTGCAGCAGTGCTGTTGACAGCAGCGAGGAGAACTCTGTTGTGCA
AGGGGATGCAGGGAGTTTCCGGCCGAATGATAAAGCGCCAGGCGTGGAGA
CGGCGGCGGTGGCGGTGGCAGCGGTGGAGGCAAAACGACACGGACGACCA
AACGCAGCAGGGGCGGGGATAATGGTGCAGCTCCCCCGGCCTGCTGAAGG
TGATAGGGTGTCATCGACCACACCTGGCGACAACAGCGGTTTCGGCTGCG
CACTTTTTTCGGCCTCGGACAGTGAACCGAAGCAGCAGCAGCAACAACAG
CAGCATCGTCTTGTTGTCGAGGAGAACAGGCCTAGCACGAGTCGGGTCAT
CGCAAACCTTCGAGCCTCGGTCGCCTGCGATGTGCGCCCGTCATCGGCTA
GCGCCTACAGTTCTTCCTTCTTTTCGACCGCGCCTGTATTGACAGAGTTG
GCAGGGTCGGGTGCGCTTCCTGTATCTAATCCTGGGCAGATGCAGTGGGG
TGTCTCGATTCCCGGAAGAACCGCATTATCGCCCGACGTGAGACCGTACG
ATGATCACGAGGACGGCCTGGTTAGACCGAATGAGCAATCTCGACCACAG
TCAGCGGCAGCCTCGAGCGTAGCAAGCCGGCTCTCTCTTGCCTCGGGAGG
AGCAGGCGGAGAAGGTCGGCGCCACGGCGCCACTGCAACAAGCGCCAAGA
AAGTGACAACGAGCGTTAATTTGTTCGAACACGATGCAGTTTGTGGGAAG
GCGGTAGCAGCGACAAGACGGCAGCCTTTGGATAGGAAACGAGGAGGAAC
GGCAAACAGGGTCGGCAATCAGCAGCAGAACAGCTCGCGGCGCCCAAAGC
CCGCCGCTGGGACAAGTAGTGCCGAGAGGCGAGGGCGAGCCATGAGGGCC
CCGACGGGCTATTCCTTTTTCCCTTCGTCTCCTCCGGCCGTTGAAAATGT
TGCTGGGCGTGATCTGCCCTTTGATGGCGGCCATGCCCAGCCGTTCTCGC
CAGGGGAACCAATGAAGGGCGGTGTTAGCGAATGGGAAGGGCCGTCTTCT
TTTTATTCCGACGCTGCTGACGAGGCGAGGGGTATGGCCGGGTATGCCTT
AGACTCGCCAGGAACCTGGAGAGAAGCCGTCGGGTATTAA
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