mRNA_L-elsbetiae_contig13639.2768.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13639.2768.1
Unique NamemRNA_L-elsbetiae_contig13639.2768.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13639.2768.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.670e-30
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:  184 DAQPEKYMDGAAWRNFLADG-KGE-WFARWNAMAQPRINQLAAIAESEREGGGGAG--------PFRVAIVGDSTMMQQHGVLCAFLGERPGRRFDPA 447
            DAQPEKYM GA W+NFL+ G  G+ WF RWN+MAQPRI+++AA+AE+ER GG  +         PFRVA+VGDSTMMQQHGV+CAFL ER G  FD A
Sbjct:  167 DAQPEKYMSGARWKNFLSSGVSGDTWFTRWNSMAQPRIDKVAALAEAERNGGDASXXXXXXTQQPFRVAMVGDSTMMQQHGVICAFLAERAGSLFDAA 264
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BLAST of mRNA_L-elsbetiae_contig13639.2768.1 vs. uniprot
Match: A0A6H5JXH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.700e-30
Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:  184 DAQPEKYMDGAAWRNFLADGKG--EWFARWNAMAQPRINQLAAIAESEREGG-----GGAG---PFRVAIVGDSTMMQQHGVLCAFLGERPGRRFDPA 447
            DAQ +KYM GA W+NFL  G G   WF RWNAM QPRI++LAA+AE+ER  G     GG G   PFRVA++GDSTMMQQHGV+CAFL ER G  FD A
Sbjct:   89 DAQSDKYMSGAQWKNFLESGVGGDTWFTRWNAMVQPRIDKLAALAETERNWGDASSSGGRGTQQPFRVAMIGDSTMMQQHGVICAFLAERAGSLFDAA 186
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BLAST of mRNA_L-elsbetiae_contig13639.2768.1 vs. uniprot
Match: D7FKK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 7.950e-16
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  211 GAAWRNFLADGKGE-WFARWNAMAQPRINQLAAIAESEREGGGGAGPFRVAIVGDSTMMQQHGVLCAFLGERPGRRFDPAV 450
            G  W+N+L+   G  WF  WN   Q +++ LA+IAE ERE      PFRV ++GDSTM  Q G +C F+GER GRRFDP V
Sbjct:   33 GYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAE-EREDTE-TEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEV 111
[Close]
BLAST of mRNA_L-elsbetiae_contig13639.2768.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 7.610e-15
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  211 GAAWRNFLADGKGE-WFARWNAMAQPRINQLAAIAESEREGGGGAGPFRVAIVGDSTMMQQHGVLCAFLGERPGRRFDPAV 450
            G  W+N+L+   G  WF  WN   Q +++ LA+IAE ERE      PFRV ++GDSTM  Q G +C F+GER GRRFDP V
Sbjct:   33 GYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAE-EREDTE-TEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEV 111
[Close]
BLAST of mRNA_L-elsbetiae_contig13639.2768.1 vs. uniprot
Match: D7FJP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP2_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.950e-9
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  286 RINQLAAIAESEREGGGGAGPFRVAIVGDSTMMQQHGVLCAFLGERPGRRFDPAVRG 456
            +++ LAA+ E++ +GG    PFRV +VGDSTM  Q+G LC F+GER GRR++P   G
Sbjct:   64 KLDVLAALVENQ-QGGRREQPFRVLMVGDSTMRHQYGALCGFMGERGGRRYNPREEG 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13639.2768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0U4_ECTSI1.670e-3063.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXH8_9PHAE4.700e-3063.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKK9_ECTSI7.950e-1650.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJN9_ECTSI7.610e-1550.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP2_ECTSI5.950e-950.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13639contigL-elsbetiae_contig13639:73..4809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.9553378-CDS-L-elsbetiae_contig13639:72..2651622815529.9553378-CDS-L-elsbetiae_contig13639:72..265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13639 73..265 -
1691682942.8943932-CDS-L-elsbetiae_contig13639:72..2651691682942.8943932-CDS-L-elsbetiae_contig13639:72..265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13639 73..265 -
1622815529.9694076-CDS-L-elsbetiae_contig13639:4543..48091622815529.9694076-CDS-L-elsbetiae_contig13639:4543..4809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13639 4544..4809 -
1691682942.9135659-CDS-L-elsbetiae_contig13639:4543..48091691682942.9135659-CDS-L-elsbetiae_contig13639:4543..4809Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13639 4544..4809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13639.2768.1prot_L-elsbetiae_contig13639.2768.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13639 73..4809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13639.2768.1

>prot_L-elsbetiae_contig13639.2768.1 ID=prot_L-elsbetiae_contig13639.2768.1|Name=mRNA_L-elsbetiae_contig13639.2768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
STRPPGLVDRRRVGPSSTRADSSTPSRWPASQHIKRLPVVLLIGGIAAAV
AMALVAPLPKADAQPEKYMDGAAWRNFLADGKGEWFARWNAMAQPRINQL
AAIAESEREGGGGAGPFRVAIVGDSTMMQQHGVLCAFLGERPGRRFDPAV
RG*
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mRNA from alignment at L-elsbetiae_contig13639:73..4809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13639.2768.1 ID=mRNA_L-elsbetiae_contig13639.2768.1|Name=mRNA_L-elsbetiae_contig13639.2768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4737bp|location=Sequence derived from alignment at L-elsbetiae_contig13639:73..4809- (Laminarionema elsbetiae ELsaHSoW15)
AGCACACGCCCACCCGGGCTGGTGGATCGCCGGCGGGTTGGGCCATCAAG
CACCAGAGCCGACAGCAGCACCCCGTCGCGATGGCCAGCATCGCAGCACA
TCAAGCGGCTACCGGTGGTGCTCCTGATTGGGGGGATCGCGGCGGCAGTG
GCGATGGCGCTCGTGGCGCCTCTGCCGAAGGCCGATGCCCAACCCGAAAA
GTACATGGACGGGGCGGCATGGCGAAATTTCCTGGCTGACGGGAAAGGCG
AATGGTTCGCCCGCTGGTGAGTAACCCGTTTATGGTTTGTTCGACCTTTG
CACTCCACTCGCATATCCTTAGGAGCGCCCGTACGTGTACGTGGCACATA
CATACCTACATACGTCGTAGCTGGTAGACACCGGTGTTTGTGTTCTTAAT
TCAGGGTTTCCCCGTTGTTTTCCGGGCTGAATTTTCCGGTTGAGCAATTT
CCGGTTGGGGGAAAGTGGCGGTTGGAAAAATCCGGTTCCAAGAGCGGCAC
GACTGCGCACTCTGGCGGTCTGTTGGAGAGTTCAATGTTTGTTTTTTTTG
TGAACCCTCGTTCCCCACATTCCGTCATCCACAGCAACCAAGTCGCACTT
GGCGAGAGCTGTTGTACACAAACATCTATGGCTACTCTCTCCCTCGTCCT
AGTTGGTGCTTGGTCCTGACGAGAGAGTTGTGTCGGCCCTTGTGAGACGC
AAGTCCCTGCCATGCTCACGGAGCACAGCAGGCAGCGCACCACAAAATAC
ACAATAGAGCGTCTCCGTCTGCCTCACAACTACACACACAAACTCCCCGC
CCCTCACTACACACGTGAGGACGGCAGGGCTGCTACGTGCCCGTGCGAGG
GCAAGGTGCTCTCTCTTCTTTCTCTGGGTTGTAAAGACTGCCGCTGTAGA
CTTTTTTACTCGTGCGGGCCTTTTTTCGCTGGCGGACAATAAAACAGCCT
TCTCCCAGCGGAACCTGCCCAGGAAACGTCTACCCCGCTGATACATAGCA
CTCGCAAGTAGACCGCTACTCCATACTGTGCGCAATCAGCACAGGAAACG
CGCGCGCCTCTTCGTTTCCGTCCTAACCGGGAAAACTGCACCAGCATATT
TTCCGGTCAAAAAACCCGGCCGTTCGCAAAAAACGACCCGGTTGGTTTTT
CCGGCTGGAGGTGCGGCGCAACTACGCAACCGGAATAAAACACTGCTGTC
CAACCGGAAAAAGTAGTTCAACCGGATTTTTGTTGTGCTGTGGGGAAACC
CTTAACTGTTTGTTGTCCATACATACAGATCCCCCTTCGGAGCGAGCTCG
TGAGATTACGGCGGCAGGGGGTGATGCAAGACGAGTTTTGAACCCAGATC
TTTGAATTAATCGTCACGCTTTTAGATCAGTGGCTGTGTATCGGAAACAG
CTCCCCTCCAAAACACAGCGACAGAACCGGGTGCTTCTATGCGGACGCTC
CGCCCTTGTCAACACAGCTGCAGGCCTGTGCCTCTCAGCGCTGTATCAGA
AAAAGGCAGCTGCTGCCATACTGACAGTTGTTTGGGATATTGGAAGCGGA
CAGCCCACAGATTCAGAATTCGGAACATAAGTTCCCAGGCCCCATTTCTG
TAGTTAGTCCTACAGTAGTGGGTGGACCTGTTTAGTGCTGGTTGAATAGT
GCTGGTGGCCCGGTTTAGTGCCGGTGACTTTTCTTGACGCAGGCGGTGCC
CTCATTAGTGCCACACCGGCACTAAGAGGGCACCGCCCGCTATAATGCCG
GTGGGGCACCACGATACCCCACAATAGTGCCGTGCTGGTTCTCCGACGCG
CGCGCGCACACACACACGCACACTCCCACAACAGCACAGACGCCGAACAC
AGAAAATAGGGTACACGTGCTGTGCCGCTGCAGACCCGAACAGCTCTTAC
GCAGAGGTGCACCATGCCATGTGCGGAGGGTGAACTGTGCCTTCAACGGG
ACAAAACACCGCAAGCCCCTCACGGTCACCAGTGCAAGGGAAGATGTGGC
GGCCGGCTTCACGGCAATTGCGGCAACATGTTGCGAAATCGCCCGCAACC
ATTGACATATACCACAGAGACAGCGTCTGAAATTAATCTCTCACACGCAC
GTTTCATTGCGTGGCATTGCCTTGCCGCACCTGCAGCTGTACGAACGGGA
GCATCCCAAGCATTTTTTGCTGACCAAGGTTAAATCGGGCGCATGATGTG
TGTCTCCCTTTCGCCGTCGACGAGTGCTGACCTATTGAGAGGCCAGTGCC
ACTTCTTTCTTGCCCACAGAACATTAGGCAGCTGTGATGTGCATCTCTCT
GAAAAATGGCAGAGCGGTAGTACATATTCATTTCAAGGGTTCAAGCCGCG
ACATCTCCGGCTGTGCAGTGCGTGTGCTGAGGCGGGCAGAGACTAGCGGT
GCAACATGCAAGTAATTTTTACAACAAACTCTTGTGTGTTCGGCGGGTTG
GTCGTGAGAAAGTCTGCCCGCGCCGCCCAAGCTAGAACTTGACCAACTTT
GATCCGTTTCGTACTTCGTTGGCCCCGCAAAGCGTGAGCGCCGAACCATG
AGATCAAACAGTTCGTCAACGGCACTAATGAGGGATGTTCGAAACCTGAA
TAGTGCCGTCTTGGCACTTTTCGCAATAGTGCCAGTGGCCCTGTGTAGTG
CCGATGAATGTGCTGGACACAGAGATACCAGCACTACACAGGGTCCACTC
ACTGTACGGGTTTTTGGCTCTTGAGCGTGTCTCTCTGTGTACACTTTGCG
TTTATGTCACTGCTTTCGTTGGATTCTCTCTGGCGGAACAGAATGTTTTG
TCACAGTTTCTCCTGCATGTTCCGTCGGTTCACTACCCGCTAGTACGTGT
GGGTCTCGCGGGGCACCGGTTGTCTGGTGTATTCGCCGCTAAAAGTCGCT
GGGACTGGCACTATTTCACTGCGAGTTCGAACCAAGAAATCCTCCTTACA
TACAACTAAACTAGGCGGGCTAATATTTATTTACTTACACACGTTCACAC
TGTCATCTAGAGTTAGACAGCGCCACGTACACCAAGAGGGCGCAAACACG
AGGATAAGCAGTGGGAACAGCGGCACCTGACGACAACGCAGCTGCCGCAC
ACAACGAGCGCATGTGCACACCCGCGCACACGCACGCGCACCTCCGGGAA
ATCTCATAAAAAAGGTCGGCGTCGGAGTGTTAATTGTAGCCCCCCGTACT
TGCGCACTTGTGGACGCAGTTTCGAACCCCGGCATCGACATTTTTTCATT
ATCCTTTTTGTGTCCCCTCTTTTTCTTCCCAGACTTGCACTCCTTCTCGA
AATTCCACAACCCGTGAATTTCCAATCGTCCCTCTCACGCCGAAGAGGTA
ACTGTTGCTGTACGCAACACCCACAAGTCAGCATCAGCAATTTTTTTATG
CTGCAAATTCCTGGTATTTAAAAATAAAACAAAGAATCAAAAGATGGAAC
CTAACCCATACTAATAGAGCAAAGACTCGATATGGGGTTCAAAACGGTAT
TCCATACAGAGACGTAATATTTGGCGAAGCGAGCAGAAAAAACAACCTAA
ATATCAGAAGAATTCAACATCTCCCCCGCAAAGATAAAGATTCAACATCT
CCCCTGCAAAGATAAAGATTCAACATCTCCGCTGCAAAGATAAAGATTCA
ACATCTCCGCTGCAAAGATTAAGATTTGCGAGGTCGGCCAACAATTTTCC
AGCGGGTAGAGCCCACCGTGATGCCGGTATTTATTTTCAACAGGGTTTTA
GGGCTGTGCGCAAAAAAGCGAGCGTTCGTGTGGCCTTCACAAACATACGG
AGATAAAAAACACAATCTAGATAGGTTTTATTCGTGTGGTCTCATTTGGA
CTTGCGTCGCCCCCGGGAGAGCACGCACCGACCTCCCGGAACGGGGACCC
CCCTGTATTGATGCATGGAGAGCGGCCGGCTCGAGCCTTGAGCTGCTTCG
GCCTGCTACTTTTGTATCTATTTAGCGTATGTATGATGTGTACGTGTGTG
ACCCCGGTTGGATCGTCTAGCTACCGTAATCATGCGAAGGTTCGCACCCC
CCGTGTTAGCATTTTTCTTGTGGAGAAATACGCTATAGAAAAACGCTAAC
ACGGGGGTGCGAACCTTCGCATGATTACGGGAGTCGTAGTGGAGCATGGG
GGCCAGTGGGGCAGACGACGAATAAATATGTCAATAATGGGAGGGGAGAA
AATACAAAAAAAAATGTACGCGGATATGCATGTAGCAGATAAATAAGGAG
ACACAGCAGGCCACCCGCCGCCGCCGCCGCCATCTACTCTTACTCTTTCA
TGATCTCGTGCATCGGCTGGCTCGCTCCGCTTACATAACAATTTTTTTAA
AGGTCCCTCAATCGCACCAGCAGTTTCCCCGCAGCGCTCTCTCTCCCGTC
CGTCTCTCTCCCTTTGCGCCTTCCTCTCTCTCTCTCTCTCTCTCGCCCGT
CGCCGTGAAAGCGCGTTGCGCTACGTCTCACTCATTCATCACCCCCAGCG
ATTTTTTTTTTTCGTTCTTGTCACCCCGCCTTTTTTTTGCTCAGGAACGC
CATGGCGCAGCCTCGAATAAACCAGCTCGCCGCCATCGCGGAATCCGAGA
GGGAGGGCGGCGGCGGCGCCGGTCCTTTCCGCGTAGCAATAGTAGGGGAC
AGTACCATGATGCAGCAACACGGCGTGCTGTGCGCGTTTCTGGGGGAGCG
GCCCGGCAGACGGTTCGACCCGGCGGTGAGGGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13639:73..4809-

>mRNA_L-elsbetiae_contig13639.2768.1 ID=mRNA_L-elsbetiae_contig13639.2768.1|Name=mRNA_L-elsbetiae_contig13639.2768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig13639:73..4809- (Laminarionema elsbetiae ELsaHSoW15)
AGCACACGCCCACCCGGGCTGGTGGATCGCCGGCGGGTTGGGCCATCAAG
CACCAGAGCCGACAGCAGCACCCCGTCGCGATGGCCAGCATCGCAGCACA
TCAAGCGGCTACCGGTGGTGCTCCTGATTGGGGGGATCGCGGCGGCAGTG
GCGATGGCGCTCGTGGCGCCTCTGCCGAAGGCCGATGCCCAACCCGAAAA
GTACATGGACGGGGCGGCATGGCGAAATTTCCTGGCTGACGGGAAAGGCG
AATGGTTCGCCCGCTGAGCACACGCCCACCCGGGCTGGTGGATCGCCGGC
GGGTTGGGCCATCAAGCACCAGAGCCGACAGCAGCACCCCGTCGCGATGG
CCAGCATCGCAGCACATCAAGCGGCTACCGGTGGTGCTCCTGATTGGGGG
GATCGCGGCGGCAGTGGCGATGGCGCTCGTGGCGCCTCTGCCGAAGGCCG
ATGCCCAACCCGAAAAGTACATGGACGGGGCGGCATGGCGAAATTTCCTG
GCTGACGGGAAAGGCGAATGGTTCGCCCGCTGGAACGCCATGGCGCAGCC
TCGAATAAACCAGCTCGCCGCCATCGCGGAATCCGAGAGGGAGGGCGGCG
GCGGCGCCGGTCCTTTCCGCGTAGCAATAGTAGGGGACAGTACCATGATG
CAGCAACACGGCGTGCTGTGCGCGTTTCTGGGGGAGCGGCCCGGCAGACG
GTTCGACCCGGCGGTGAGGGGGTGAGAACGCCATGGCGCAGCCTCGAATA
AACCAGCTCGCCGCCATCGCGGAATCCGAGAGGGAGGGCGGCGGCGGCGC
CGGTCCTTTCCGCGTAGCAATAGTAGGGGACAGTACCATGATGCAGCAAC
ACGGCGTGCTGTGCGCGTTTCTGGGGGAGCGGCCCGGCAGACGGTTCGAC
CCGGCGGTGAGGGGGTGA
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