mRNA_L-elsbetiae_contig1363.2762.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1363.2762.1
Unique NamemRNA_L-elsbetiae_contig1363.2762.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1363.2762.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 7.490e-7
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:  164 GGVRSQKCVHQGCVKRPSFGAVGTKRREFCKEHAEDGMVGLSHK 295
            GG R  +C H+ C KRP++G  G+K+REFC +HA DGMV +++K
Sbjct:   57 GGSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 100
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BLAST of mRNA_L-elsbetiae_contig1363.2762.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 6.320e-5
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 2 
Query:  182 KCVHQGCVKRPSFGAVGTKRREFCKEHAEDGMVGLSHK 295
            +C H  C KRP++G  G+K+REFC +HA DGMV +++K
Sbjct:    3 QCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 40
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1363.2762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JT00_9PHAE7.490e-752.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI73_ECTSI6.320e-552.63EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1363contigL-elsbetiae_contig1363:5645..7821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2177
Cds size1590
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1363.2762.1prot_L-elsbetiae_contig1363.2762.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1363 5763..7352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.3120353-UTR-L-elsbetiae_contig1363:5644..57621622815529.3120353-UTR-L-elsbetiae_contig1363:5644..5762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1363 5645..5762 +
1691682942.5049195-UTR-L-elsbetiae_contig1363:5644..57621691682942.5049195-UTR-L-elsbetiae_contig1363:5644..5762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1363 5645..5762 +
1622815529.3419638-UTR-L-elsbetiae_contig1363:7352..78211622815529.3419638-UTR-L-elsbetiae_contig1363:7352..7821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1363 7353..7821 +
1691682942.5240037-UTR-L-elsbetiae_contig1363:7352..78211691682942.5240037-UTR-L-elsbetiae_contig1363:7352..7821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1363 7353..7821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.330249-CDS-L-elsbetiae_contig1363:5762..73521622815529.330249-CDS-L-elsbetiae_contig1363:5762..7352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1363 5763..7352 +
1691682942.5146778-CDS-L-elsbetiae_contig1363:5762..73521691682942.5146778-CDS-L-elsbetiae_contig1363:5762..7352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1363 5763..7352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1363.2762.1

>prot_L-elsbetiae_contig1363.2762.1 ID=prot_L-elsbetiae_contig1363.2762.1|Name=mRNA_L-elsbetiae_contig1363.2762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=530bp
MEFRDAQACAGHTVEGGVRSQKCVHQGCVKRPSFGAVGTKRREFCKEHAE
DGMVGLSHKRCAHQGCGKQSTFGVAGSKKVDFCFGHAKEGMVNVTNFRAC
AHEGCTKHSSHGATGTKKREFCAGHAKQGMVELNTKRCAQQGCSKRSSFG
VAGTKKIEFCREHAKQGMVDLRNKKCAQRDCTKGPSFGVAGTNKREFCRE
HAEQGMVDIMHKRCSNPGCSKIPSFGVVGTKNREFCAGHAKEGMVNVNHN
KGAHRGCTKAPSFGVAGIKKDESYRAHAGEGQMRVPVEVNGVQGSVDAPG
ALAAPPPHALVPPQASMGTSSDSNGRTMRPPARSQHRNGLDRPSTQEPKS
AMSKGTFRRQNNDGAFLPRAAVEPQGGEVTDKEPSAVVAESSYRSPPNPS
AGGERGVPASVKVENVELLSRVLVRGDDPAGDEHATARRIGNERSERKGR
APPSSARTNAAAAMAAGNKGSRCRRAKRARPASNDDVVVLEADDVMLVGA
STTRTAGRKTHTETGASVKIEPAPCMSTV*
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mRNA from alignment at L-elsbetiae_contig1363:5645..7821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1363.2762.1 ID=mRNA_L-elsbetiae_contig1363.2762.1|Name=mRNA_L-elsbetiae_contig1363.2762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2177bp|location=Sequence derived from alignment at L-elsbetiae_contig1363:5645..7821+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGGGCTGAAACGAAGTAGTCTCTTACAGCCGAATAGAGAAGGCGACGC
GGCAGGCGTTGGATCCCACTCCATGCCGCCATCGTCCTCACGCGAGGGTT
GCTCGAACAAGAAACCTTATGGAGTTTCGCGATGCACAAGCGTGCGCTGG
ACATACAGTTGAGGGCGGTGTCCGCAGCCAGAAGTGCGTACACCAGGGTT
GCGTCAAGCGCCCATCATTTGGCGCGGTGGGAACCAAGAGGCGGGAATTC
TGCAAGGAACATGCGGAGGACGGGATGGTCGGCCTCAGCCATAAGAGATG
CGCACACCAAGGCTGCGGTAAACAGTCGACGTTTGGCGTGGCGGGGTCCA
AGAAGGTGGACTTCTGCTTTGGACATGCCAAGGAGGGGATGGTCAACGTC
ACCAATTTCAGAGCGTGTGCACACGAGGGTTGCACCAAGCATTCGTCGCA
TGGTGCAACGGGAACCAAGAAGCGAGAGTTCTGCGCAGGACATGCCAAGC
AAGGAATGGTCGAACTCAACACCAAGAGGTGCGCACAGCAGGGTTGCAGC
AAACGTTCGTCGTTCGGCGTAGCGGGCACCAAGAAGATCGAATTCTGCCG
GGAGCATGCCAAACAAGGGATGGTGGACCTCCGCAATAAGAAGTGCGCAC
AACGGGATTGCACCAAGGGTCCGTCATTTGGCGTAGCGGGGACCAACAAG
CGAGAGTTCTGCAGAGAACATGCCGAGCAAGGGATGGTCGACATCATGCA
CAAGAGGTGCTCAAACCCGGGCTGCAGTAAGATTCCGTCGTTTGGCGTGG
TGGGAACCAAAAATCGAGAGTTTTGCGCTGGACATGCCAAAGAGGGTATG
GTCAACGTCAACCACAACAAGGGTGCACACCGGGGTTGCACCAAGGCTCC
GTCGTTTGGCGTAGCGGGGATCAAAAAGGACGAGTCCTACAGGGCCCATG
CCGGCGAGGGACAGATGCGAGTGCCAGTCGAGGTAAACGGGGTTCAGGGC
AGCGTGGATGCCCCGGGAGCTTTAGCAGCACCGCCACCGCATGCCCTGGT
ACCACCTCAAGCGAGCATGGGCACCAGCAGTGACAGTAATGGTCGCACTA
TGCGCCCTCCCGCACGAAGCCAACACCGAAATGGCCTCGACCGGCCTTCT
ACCCAGGAGCCAAAGAGCGCGATGAGCAAGGGCACTTTCAGACGGCAAAA
CAACGACGGAGCCTTCCTACCTCGTGCTGCTGTAGAGCCGCAGGGGGGTG
AAGTCACGGATAAAGAGCCGTCTGCCGTCGTCGCAGAAAGCTCCTACCGG
TCCCCGCCGAACCCATCAGCAGGAGGCGAACGCGGCGTTCCTGCCAGCGT
AAAGGTGGAGAACGTAGAGCTCTTGTCCAGAGTCCTTGTTCGCGGCGATG
ACCCGGCTGGGGACGAGCACGCGACCGCACGCCGCATTGGCAACGAACGA
AGCGAGCGGAAGGGCCGGGCGCCGCCATCATCCGCTCGGACGAACGCTGC
CGCCGCTATGGCAGCGGGAAATAAGGGCAGCAGGTGCAGGCGTGCCAAAC
GAGCCCGACCGGCTAGTAACGACGACGTGGTTGTTCTGGAAGCAGACGAT
GTGATGCTAGTAGGAGCATCAACAACAAGGACTGCAGGGCGGAAGACCCA
CACGGAAACTGGAGCGAGTGTCAAGATCGAGCCAGCACCTTGCATGAGCA
CCGTTTGATCAGCGGCGGCTACTCCTGCTGTTTGCGGGATTACCAACTGC
GCTGGAGACGGGAAAGGAGTAGCATCGGCAAGCCCAATGTACTTGCTTTG
GTTTTGGAACGGGCGTAACTACAGTGAGAGGCGTGATTGCCTTGTAGTGT
GTTGCCTCTTTGTTCGAGGGATTCAATGCATGCGATGTTTTGCATTCGTA
CGTTGTTTTGAACCAGGATGACACAACCAAAGGATAAGTCCGGGGTATAG
TTTTTGGTCGAGGTTCTCTGATGGTGCTTTGCGCTCATGCAGGAGGGCCG
AAGAAATAAAACGAGGAACAACGCTGAGAAATGGAATCCCTGGCTGGCTG
TCACGCAGCCTGTGTTGTAGAGTTATTACCTCGAGGTACATCCGTCTTCG
AACAGCTGTTAGATATATTGTGCGCGGGCGGCTCTCTGTTCTGCGATAAA
CACTCCAACTACTGCAGTCCTTGACTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1363:5645..7821+

>mRNA_L-elsbetiae_contig1363.2762.1 ID=mRNA_L-elsbetiae_contig1363.2762.1|Name=mRNA_L-elsbetiae_contig1363.2762.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3180bp|location=Sequence derived from alignment at L-elsbetiae_contig1363:5645..7821+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGTTTCGCGATGCACAAGCGTGCGCTGGACATACAGTTGAGGGCGG
TGTCCGCAGCCAGAAGTGCGTACACCAGGGTTGCGTCAAGCGCCCATCAT
TTGGCGCGGTGGGAACCAAGAGGCGGGAATTCTGCAAGGAACATGCGGAG
GACGGGATGGTCGGCCTCAGCCATAAGAGATGCGCACACCAAGGCTGCGG
TAAACAGTCGACGTTTGGCGTGGCGGGGTCCAAGAAGGTGGACTTCTGCT
TTGGACATGCCAAGGAGGGGATGGTCAACGTCACCAATTTCAGAGCGTGT
GCACACGAGGGTTGCACCAAGCATTCGTCGCATGGTGCAACGGGAACCAA
GAAGCGAGAGTTCTGCGCAGGACATGCCAAGCAAGGAATGGTCGAACTCA
ACACCAAGAGGTGCGCACAGCAGGGTTGCAGCAAACGTTCGTCGTTCGGC
GTAGCGGGCACCAAGAAGATCGAATTCTGCCGGGAGCATGCCAAACAAGG
GATGGTGGACCTCCGCAATAAGAAGTGCGCACAACGGGATTGCACCAAGG
GTCCGTCATTTGGCGTAGCGGGGACCAACAAGCGAGAGTTCTGCAGAGAA
CATGCCGAGCAAGGGATGGTCGACATCATGCACAAGAGGTGCTCAAACCC
GGGCTGCAGTAAGATTCCGTCGTTTGGCGTGGTGGGAACCAAAAATCGAG
AGTTTTGCGCTGGACATGCCAAAGAGGGTATGGTCAACGTCAACCACAAC
AAGGGTGCACACCGGGGTTGCACCAAGGCTCCGTCGTTTGGCGTAGCGGG
GATCAAAAAGGACGAGTCCTACAGGGCCCATGCCGGCGAGGGACAGATGC
GAGTGCCAGTCGAGGTAAACGGGGTTCAGGGCAGCGTGGATGCCCCGGGA
GCTTTAGCAGCACCGCCACCGCATGCCCTGGTACCACCTCAAGCGAGCAT
GGGCACCAGCAGTGACAGTAATGGTCGCACTATGCGCCCTCCCGCACGAA
GCCAACACCGAAATGGCCTCGACCGGCCTTCTACCCAGGAGCCAAAGAGC
GCGATGAGCAAGGGCACTTTCAGACGGCAAAACAACGACGGAGCCTTCCT
ACCTCGTGCTGCTGTAGAGCCGCAGGGGGGTGAAGTCACGGATAAAGAGC
CGTCTGCCGTCGTCGCAGAAAGCTCCTACCGGTCCCCGCCGAACCCATCA
GCAGGAGGCGAACGCGGCGTTCCTGCCAGCGTAAAGGTGGAGAACGTAGA
GCTCTTGTCCAGAGTCCTTGTTCGCGGCGATGACCCGGCTGGGGACGAGC
ACGCGACCGCACGCCGCATTGGCAACGAACGAAGCGAGCGGAAGGGCCGG
GCGCCGCCATCATCCGCTCGGACGAACGCTGCCGCCGCTATGGCAGCGGG
AAATAAGGGCAGCAGGTGCAGGCGTGCCAAACGAGCCCGACCGGCTAGTA
ACGACGACGTGGTTGTTCTGGAAGCAGACGATGTGATGCTAGTAGGAGCA
TCAACAACAAGGACTGCAGGGCGGAAGACCCACACGGAAACTGGAGCGAG
TGTCAAGATCGAGCCAGCACCTTGCATGAGCACCGTTTGAATGGAGTTTC
GCGATGCACAAGCGTGCGCTGGACATACAGTTGAGGGCGGTGTCCGCAGC
CAGAAGTGCGTACACCAGGGTTGCGTCAAGCGCCCATCATTTGGCGCGGT
GGGAACCAAGAGGCGGGAATTCTGCAAGGAACATGCGGAGGACGGGATGG
TCGGCCTCAGCCATAAGAGATGCGCACACCAAGGCTGCGGTAAACAGTCG
ACGTTTGGCGTGGCGGGGTCCAAGAAGGTGGACTTCTGCTTTGGACATGC
CAAGGAGGGGATGGTCAACGTCACCAATTTCAGAGCGTGTGCACACGAGG
GTTGCACCAAGCATTCGTCGCATGGTGCAACGGGAACCAAGAAGCGAGAG
TTCTGCGCAGGACATGCCAAGCAAGGAATGGTCGAACTCAACACCAAGAG
GTGCGCACAGCAGGGTTGCAGCAAACGTTCGTCGTTCGGCGTAGCGGGCA
CCAAGAAGATCGAATTCTGCCGGGAGCATGCCAAACAAGGGATGGTGGAC
CTCCGCAATAAGAAGTGCGCACAACGGGATTGCACCAAGGGTCCGTCATT
TGGCGTAGCGGGGACCAACAAGCGAGAGTTCTGCAGAGAACATGCCGAGC
AAGGGATGGTCGACATCATGCACAAGAGGTGCTCAAACCCGGGCTGCAGT
AAGATTCCGTCGTTTGGCGTGGTGGGAACCAAAAATCGAGAGTTTTGCGC
TGGACATGCCAAAGAGGGTATGGTCAACGTCAACCACAACAAGGGTGCAC
ACCGGGGTTGCACCAAGGCTCCGTCGTTTGGCGTAGCGGGGATCAAAAAG
GACGAGTCCTACAGGGCCCATGCCGGCGAGGGACAGATGCGAGTGCCAGT
CGAGGTAAACGGGGTTCAGGGCAGCGTGGATGCCCCGGGAGCTTTAGCAG
CACCGCCACCGCATGCCCTGGTACCACCTCAAGCGAGCATGGGCACCAGC
AGTGACAGTAATGGTCGCACTATGCGCCCTCCCGCACGAAGCCAACACCG
AAATGGCCTCGACCGGCCTTCTACCCAGGAGCCAAAGAGCGCGATGAGCA
AGGGCACTTTCAGACGGCAAAACAACGACGGAGCCTTCCTACCTCGTGCT
GCTGTAGAGCCGCAGGGGGGTGAAGTCACGGATAAAGAGCCGTCTGCCGT
CGTCGCAGAAAGCTCCTACCGGTCCCCGCCGAACCCATCAGCAGGAGGCG
AACGCGGCGTTCCTGCCAGCGTAAAGGTGGAGAACGTAGAGCTCTTGTCC
AGAGTCCTTGTTCGCGGCGATGACCCGGCTGGGGACGAGCACGCGACCGC
ACGCCGCATTGGCAACGAACGAAGCGAGCGGAAGGGCCGGGCGCCGCCAT
CATCCGCTCGGACGAACGCTGCCGCCGCTATGGCAGCGGGAAATAAGGGC
AGCAGGTGCAGGCGTGCCAAACGAGCCCGACCGGCTAGTAACGACGACGT
GGTTGTTCTGGAAGCAGACGATGTGATGCTAGTAGGAGCATCAACAACAA
GGACTGCAGGGCGGAAGACCCACACGGAAACTGGAGCGAGTGTCAAGATC
GAGCCAGCACCTTGCATGAGCACCGTTTGA
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