mRNA_L-elsbetiae_contig13614.2752.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13614.2752.1
Unique NamemRNA_L-elsbetiae_contig13614.2752.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: A0A6H5JMU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 8.810e-18
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    2 CTPNPLMYRVVDKSKYKLGESEIKSMLDGSSTYVTTTRGRDEFIAEYGSQTLEIKTLRQERETELQAGHHRSMFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAI 343
            C  NPL  R+V+ + YK G  EI+ M  G   ++ T R R  ++  Y  +T+ +KTL+   E   +  H  SM R E+L LDALRG P+IV +LGF  T +VTEY  +N    I
Sbjct:  143 CDRNPLWERMVNPANYKFGCKEIEEMFSGDMAFIGTGRIRTVYMVNYQGETVVVKTLQHVEELRREKAHL-SMHRREVLTLDALRGQPHIVGMLGFCQTTVVTEYHSDNFLSTI 255          
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: D7FNX1_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 9.790e-17
Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 2
Query:    2 CTPNPLMYRVVDKSKYKLGESEIKSMLDGSSTYVTTTRGRDEFIAEYGSQTLEIKTLRQERETE-LQAGHHRSMFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAI 343
            C  NPL  +  + + YK G  EI+ ML G  T + T R R   + EY  + + +KTL+   E   L+A  H  M R E L L+ALRGHPN+V +LGF +T +VTEY P+N    I
Sbjct:   75 CDRNPLWEKQPNPANYKFGCQEIERMLSGEMTLIGTGRVRTVHMVEYEGEAVVVKTLQHVEELRRLKA--HLEMHRVESLTLEALRGHPNVVGMLGFCNTTVVTEYHPDNFLHTI 187          
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: A0A6H5J7B7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7B7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.440e-14
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 2
Query:    2 CTPNPLMYRVVDKSKYKLGESEIKSMLDGSSTYVTTTRGRDEFIAEYGSQTLEIKTLRQERETELQAGHHRSMFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAIL 346
            C  +PL  +VVD+S Y+ G  EI+ M++G  T +     RD ++ E G + L +K LR++ E          + R E   +DA+RGHPN+V +LG    + V+EY P  +   +L
Sbjct:  221 CLRSPLWDKVVDESNYEFGCDEIEEMMEGKKTLIGNGNIRDVYLVERGGRNLVVKYLREDFEQRATRTRVERIHRWEAAAIDAVRGHPNVVDMLGICGPSSVSEYFPVRLDDLVL 335          
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: A0A6H5LAH0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 9.290e-14
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 2
Query:    2 CTPNPLMYRVVDKSKYKLGESEIKSMLDGSSTYVTTTRGRDEFIAEYGSQTLEIKTLRQERETELQAGHHRSMFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAILDR 352
            C  NPL  R+VD ++YK G  EI +M+      + +   RD ++ EY  Q L +KTLR   E   Q   + +M + E+L +DAL+GHPNIV +LG   T +VT++   + + +I  R
Sbjct:   90 CRRNPLHERIVDPAEYKYGCKEIHNMIRREHALLASGLVRDVYLVEYEGQALVVKTLRNVDELRKQK-LYLTMHKREVLTMDALKGHPNIVDMLGVCGTTVVTKFFKEDFKGSIRRR 205          
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: A0A6H5L434_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L434_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.770e-13
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 2
Query:    2 CTPNPLMYRVVDKSKYKLGESEIKSMLDGSSTYVTTTRGRDEFIAEYGSQTLEIKTLRQERETELQAGHHRS--MFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAIL 346
            C P+PL  + VD SK++ G  EI+SML      +     RD ++ E+G + L +K LR++   EL+A   R+  + R E   LD +RGHPNIV +LG   ++ V+E+ P+ +   +L
Sbjct:  196 CLPSPLCEKRVDPSKFEFGCEEIESMLADEKKLIGHGNIRDVYLVEWGGRKLVVKALRED--FELRASRRRADKIHRWEATALDEVRGHPNIVDMLGLCESSSVSEFFPSRLDDLVL 310          
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: A0A6H5JU33_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU33_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.670e-11
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 2
Query:   68 IKSMLDGSSTYVTTTRGRDEFIAEYGSQTLEIKTLRQERETE-LQAGHHRSMFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAI 343
            ++ ML G  T + T R R   + EY  + + +KTL+   E   L+A  H  M R E L L+ALRGHPN+V ++GF +T +VTEY P N   AI
Sbjct:    4 VQRMLSGEMTLIGTGRVRTVHMVEYEGEAVVVKTLQHVEELRRLKA--HLEMHRVESLTLEALRGHPNVVGMVGFCNTTVVTEYHPYNFLHAI 94          
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: D7G7W7_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W7_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.370e-9
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 2
Query:   71 KSMLDGSSTYVTTTRGRDEFIAEYGSQTLEIKTLRQERETELQAGHHRSMFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAI 343
            ++ML G++T V   R RD ++ EY  + + +KTLR   ++  Q  H     R E+L LDA+RGH NIV +LG   T +VTEY   +  +AI
Sbjct:   21 QNMLAGNTTLVGNGRVRDVYLVEYEGRKVALKTLRNMDDSRSQRVHLEKHKR-EILTLDAMRGHRNIVGMLGLCDTMVVTEYYTTSFLRAI 110          
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: A0A6H5K7R0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.770e-8
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 2
Query:   77 MLDGSSTYVTTTRGRDEFIAEYGSQTLEIKTLRQERETELQAGHHRSMFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAI 343
            ML G+ T V   R RD ++ EY  + + +KTLR   +   +  H     R E+L LDA+RGH NIV +LGF  T +VTEY   +  +AI
Sbjct:  165 MLAGNKTLVGNGRVRDVYLVEYEGRKVALKTLRNMDDGRSKKVHLMKHKR-EILTLDAMRGHRNIVGMLGFCDTMVVTEYYTTSFLRAI 252          
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: D8LN73_ECTSI (Serine/threonine/tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN73_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.230e-6
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 2
Query:   77 MLDGSSTYVTTTRGRDEFIAEYGSQTLEIKTLRQERETELQAGHHRSMFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAILDR 352
            M+    T + +   RD ++ EY  Q L +KTLR   E   Q   + +M + E+L +DAL+GHPNIV +LG   T +VT++   + + +I  R
Sbjct:    1 MIRREQTLLASGLVRDVYLVEYEGQALVVKTLRNVDELRKQK-LYLTMHKREVLTMDALKGHPNIVEMLGVCGTTVVTKFFKEDFKGSIRRR 91          
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Match: D8LN76_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN76_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.080e-6
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 2
Query:  131 IAEYGSQTLEIKTLRQERETELQAGHHRSMFRDELLVLDALRGHPNIVALLGFTSTAMVTEYSPNNVQQAI 343
            +  Y  + + +KTL+   E   +  H  SM R E+L LDALRG P+IV +LGF  T +VTEY  +N    I
Sbjct:    1 MVNYQGENVVVKTLQHVEELRREKAHL-SMHRREVLTLDALRGQPHIVGMLGFCQTTVVTEYHSDNFLSTI 70          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13614.2752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JMU0_9PHAE8.810e-1841.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNX1_ECTSI9.790e-1742.61Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5J7B7_9PHAE4.440e-1434.78Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5LAH0_9PHAE9.290e-1437.61Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L434_9PHAE1.770e-1336.75Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JU33_9PHAE3.670e-1143.01Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G7W7_ECTSI4.370e-940.66Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
A0A6H5K7R0_9PHAE2.770e-841.57Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LN73_ECTSI1.230e-635.87Serine/threonine/tyrosine kinase n=1 Tax=Ectocarpu... [more]
D8LN76_ECTSI2.080e-642.25Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13614contigL-elsbetiae_contig13614:1636..2828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size356
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13614.2752.1prot_L-elsbetiae_contig13614.2752.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13614 1636..2828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.360327-CDS-L-elsbetiae_contig13614:1635..17081622815528.360327-CDS-L-elsbetiae_contig13614:1635..1708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13614 1636..1708 +
1691682941.956983-CDS-L-elsbetiae_contig13614:1635..17081691682941.956983-CDS-L-elsbetiae_contig13614:1635..1708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13614 1636..1708 +
1622815528.3710825-CDS-L-elsbetiae_contig13614:2060..22371622815528.3710825-CDS-L-elsbetiae_contig13614:2060..2237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13614 2061..2237 +
1691682941.9670012-CDS-L-elsbetiae_contig13614:2060..22371691682941.9670012-CDS-L-elsbetiae_contig13614:2060..2237Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13614 2061..2237 +
1622815528.4119527-CDS-L-elsbetiae_contig13614:2724..28281622815528.4119527-CDS-L-elsbetiae_contig13614:2724..2828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13614 2725..2828 +
1691682941.9818509-CDS-L-elsbetiae_contig13614:2724..28281691682941.9818509-CDS-L-elsbetiae_contig13614:2724..2828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13614 2725..2828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13614.2752.1

>prot_L-elsbetiae_contig13614.2752.1 ID=prot_L-elsbetiae_contig13614.2752.1|Name=mRNA_L-elsbetiae_contig13614.2752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MHTKPTDVPGGGQIQVQARRIRNQEHAGRQQHVCDYYQRPRRVHSRIREP
NTRDQDSSARTRNGITGRTSPFNVQGRVAGTGRSPRTSKYRRASRIHEYC
HGHGVLSKQRSAGDTRSS
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mRNA from alignment at L-elsbetiae_contig13614:1636..2828+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13614.2752.1 ID=mRNA_L-elsbetiae_contig13614.2752.1|Name=mRNA_L-elsbetiae_contig13614.2752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1193bp|location=Sequence derived from alignment at L-elsbetiae_contig13614:1636..2828+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACACCAAACCCACTGATGTACCGGGTGGTGGACAAATCCAAGTACA AGCTCGGCGAATCAGAAATCAAGGTGCACGATTGATTCTTGTGTTAGTGT TCCGGATGTCCAAGAACAACAAACATGTTTTTTTGAGTCGACGGGTGCAC ATAAAAATGTTTTCCCACGCAAACCATCACTCTCCCCTGCCAGGGCCTAA TAACACTCTTTGATTTCGCTCGTTTTTGGCGGTTTCAAAGCTAATTGAAG CAAGCCGCGGAGAGGAGACACCTCCCGTGCCCGCTGCAAGACTTTTCACT CTCAGTTTGAGGTGCTTGGGTGCTTTCATGATGGCATACGACGAATTCTT CAAATGACGTGGTGCAAAGCAATTCGGTCTTTGACATCCCGCGCTACCGC TAATGTGCTTCTTCTCGTTTCCAAGAGCATGCTGGACGGCAGCAGCACGT ATGTGACTACTACCAGAGGCCGCGACGAGTTCATAGCAGAATACGGGAGC CAAACACTCGAGATCAAGACTCTTCGGCAAGAACGCGAAACGGAATTACA GGCAGGACATCACCGTTCAATGTTCAGGGACGAGTTGCTGGTACTGGACG CTGTGAGTGGGTAGGCCCCAATGAGGAGGGGTGTGCTAAATATGATACAT ATCTAATAATAAGAGATCGCAGTTCTTCGCGAAGGCCGCATTGTTTTCGA GATGGTGTGAGATGGGTATTATCATTTCCGGTGTCACGCCCCGAACAGAT CACGAACAGGTGCAGAAACAATTGGGCATCACAAGATGATGTCAATAAAA TGTCAGTCTGGGCGCTTCAAAGTCATCCTCAGTGTCAGTTACCGTTTGGA GAGCCCGCGAGAAAAGCCACGATGTACATATATGTTATGTATGGGCGTCA GCGGTTGATCTCGGCCCCGCGTGGGTGCCCTCGCAGCGAGTGCAAGTGTA TGCCGCTGTGTGTGTTCACTCGAACTAATGGCTGGTGTACTTGTTCTGTA TGCACCCAATTGACACAATGTGTGGCCATCTTCCACACTTAGCGTCATCA TGATCATAAATCGCTACGACTCAACGCTCTACTGTGCAGCTCCGAGGACA TCCAAATATCGTCGCGCTTCTCGGATTCACGAGTACTGCCATGGTCACGG AGTACTCTCCAAACAACGTTCAGCAGGCGATACTCGATCGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13614:1636..2828+

>mRNA_L-elsbetiae_contig13614.2752.1 ID=mRNA_L-elsbetiae_contig13614.2752.1|Name=mRNA_L-elsbetiae_contig13614.2752.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig13614:1636..2828+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACACCAAACCCACTGATGTACCGGGTGGTGGACAAATCCAAGTACA
AGCTCGGCGAATCAGAAATCAAGATGCACACCAAACCCACTGATGTACCG
GGTGGTGGACAAATCCAAGTACAAGCTCGGCGAATCAGAAATCAAGAGCA
TGCTGGACGGCAGCAGCACGTATGTGACTACTACCAGAGGCCGCGACGAG
TTCATAGCAGAATACGGGAGCCAAACACTCGAGATCAAGACTCTTCGGCA
AGAACGCGAAACGGAATTACAGGCAGGACATCACCGTTCAATGTTCAGGG
ACGAGTTGCTGGTACTGGACGCTAGCATGCTGGACGGCAGCAGCACGTAT
GTGACTACTACCAGAGGCCGCGACGAGTTCATAGCAGAATACGGGAGCCA
AACACTCGAGATCAAGACTCTTCGGCAAGAACGCGAAACGGAATTACAGG
CAGGACATCACCGTTCAATGTTCAGGGACGAGTTGCTGGTACTGGACGCT
CTCCGAGGACATCCAAATATCGTCGCGCTTCTCGGATTCACGAGTACTGC
CATGGTCACGGAGTACTCTCCAAACAACGTTCAGCAGGCGATACTCGATC
GTCGCTCCGAGGACATCCAAATATCGTCGCGCTTCTCGGATTCACGAGTA
CTGCCATGGTCACGGAGTACTCTCCAAACAACGTTCAGCAGGCGATACTC
GATCGTCG
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