mRNA_L-elsbetiae_contig136.2736.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig136.2736.1
Unique NamemRNA_L-elsbetiae_contig136.2736.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: A0A6H5KUV0_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUV0_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 9.360e-100
Identity = 173/221 (78.28%), Postives = 183/221 (82.81%), Query Frame = 1
Query:    4 MAYLSFLAAILLGVPAANAFFMS----SAGGGVQRADFLKQVGGAAAVATAGIAAAPLASVAAATPA---VGSMAPDFTLPSNTGKDIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATLATL 645
            MAYLS LA IL G+P+  AF MS    S+G G+QRADFL+QVG    V  AGIA                VGSMAPDFTLPSN GKDI LKDLLK AKHTVLYFYPGDFTSGCTIEAQGFQ+DF+KYGA NAQIVGVSVD+IEKHLNFEKSY+LQFPLLSDIGA+VADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVE KVAKHSAEVLATLATL
Sbjct:    2 MAYLSILAVILAGLPSTGAFTMSVRPSSSGVGLQRADFLRQVG----VGAAGIAXXXXXXXXXXXXXXXXVGSMAPDFTLPSNAGKDISLKDLLKQAKHTVLYFYPGDFTSGCTIEAQGFQRDFEKYGANNAQIVGVSVDSIEKHLNFEKSYNLQFPLLSDIGANVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVESKVAKHSAEVLATLATL 218          
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: A0A835ZEZ0_9STRA (Peroxiredoxin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEZ0_9STRA)

HSP 1 Score: 210 bits (534), Expect = 8.720e-62
Identity = 108/151 (71.52%), Postives = 121/151 (80.13%), Query Frame = 1
Query:  187 PAVGSMAPDFTLPSNTG-KDIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATL 636
            PAVGS APDFTLPSN G K   L DL  T K TVLY YPGDFTSGCTIEA+GFQKD D+Y A NAQ+VG+SVD+ EKHL+F+K Y L F LLSD  A VAD YG+KLDIP +GKFANR+T+II  DGKIEKVFTDVE  VA+HS+EVLA L
Sbjct:   66 PAVGSAAPDFTLPSNDGGKAYSLSDLTGTGKTTVLYAYPGDFTSGCTIEARGFQKDIDRYKALNAQVVGMSVDSAEKHLDFKKKYGLDFILLSDKNAVVADKYGAKLDIPIIGKFANRITYIISPDGKIEKVFTDVESHVAQHSSEVLAYL 216          
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: A0A7S3UYL6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYL6_HETAK)

HSP 1 Score: 206 bits (525), Expect = 3.900e-60
Identity = 97/147 (65.99%), Postives = 118/147 (80.27%), Query Frame = 1
Query:  196 GSMAPDFTLPSNTGKDIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATL 636
            G  AP F LPSNTGKDI L+DL  T K+T+LYFYPGDFT GCTIEA  F++DFD++   NAQIVGVSVD+++KHL+F+K Y L+FPLLSD GA V++ YGS L IP +GKF+NR T+II  +GK+ KV+TDVE KVAKHS EVLA L
Sbjct:   93 GGAAPTFKLPSNTGKDISLEDLTSTGKYTILYFYPGDFTQGCTIEANAFERDFDEFAKLNAQIVGVSVDSVDKHLDFKKKYGLRFPLLSDQGAVVSESYGSSLSIPLLGKFSNRQTYIISPEGKVVKVYTDVESKVAKHSQEVLADL 239          
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: L1J8E5_GUITC (Peroxiredoxin n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J8E5_GUITC)

HSP 1 Score: 183 bits (464), Expect = 3.630e-51
Identity = 94/153 (61.44%), Postives = 110/153 (71.90%), Query Frame = 1
Query:  187 PAVGSMAPDFTLPSNTGKDIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATLATL 645
            P+V + APDF LPSN GKDIGLKDL    K TVLYFYPGDFTSGCTIEA  F+K      A  A+IVGVSVD++EKHL+F K Y L FPLLSD G  V+ LYGS L IPFMG F+NR T+II   G +  VFTDV+ ++ KH+ EV+A L  L
Sbjct:   89 PSVNAPAPDFLLPSNEGKDIGLKDL--KGKWTVLYFYPGDFTSGCTIEANNFEKASADIRALGAEIVGVSVDSVEKHLDFAKKYGLSFPLLSDQGGKVSQLYGSALQIPFMGSFSNRQTYIIDPSGNLRWVFTDVQSRLNKHADEVIAKLKEL 239          
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: A0A4D9CLH8_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLH8_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.890e-48
Identity = 89/153 (58.17%), Postives = 109/153 (71.24%), Query Frame = 1
Query:  187 PAVGSMAPDFTLPSNTGKDIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATLATL 645
            PA G  APDF+LPS+ GK + L DL K  K+TVLYF+P  FTS CT+EA+ FQ+D D Y   NAQIVGVSVD  +K  +F+    L F LLSD GA +++ YGS LDIPF+G+F+NR T+II  DGK+ KVFT+VE KV KHS EVL  L  L
Sbjct:  128 PAEGIEAPDFSLPSSLGKPLSLADLTKGGKYTVLYFFPQVFTSSCTLEAKAFQRDIDNYKKLNAQIVGVSVDESDKQTDFKSECGLDFILLSDKGAKISEAYGSALDIPFLGRFSNRQTYIISPDGKLVKVFTNVESKVKKHSEEVLEALKAL 280          
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: A0A7S0Z1C5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z1C5_9CRYP)

HSP 1 Score: 173 bits (438), Expect = 2.110e-47
Identity = 91/158 (57.59%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  178 AATPAVGSMAPDFTLPSNTGKDIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATLATL*K 651
            AATPA+ + APDF LPSN  K IGLKDL    K TVLYFYPGDFTSGCTIEAQ F+K+  K     A+IVGVSVD+ EKHL+F K Y L FPLLSD G  V+D YGS L +  +G F+NR T++I   G ++ VFTDV+ K+  H+ +V+A L  L K
Sbjct:   81 AATPAIDAPAPDFELPSNRDKSIGLKDL--KGKWTVLYFYPGDFTSGCTIEAQNFEKNAPKIRDLGAEIVGVSVDSAEKHLDFAKKYGLSFPLLSDKGGKVSDSYGSALKLGPIGTFSNRQTYLIDPSGTLKYVFTDVQSKIQSHAEDVVAKLTELTK 236          
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: A0A7S0U0Z0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U0Z0_HEMAN)

HSP 1 Score: 169 bits (429), Expect = 6.370e-46
Identity = 98/188 (52.13%), Postives = 125/188 (66.49%), Query Frame = 1
Query:   88 VQRADFLKQVGGAAAVATAGIAAAPLASVAAATPAVGSMAPDFTLPSNTGKDIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATLATL*K 651
            V R  F  + G AA V T G+    + S  AATP + + APDF LPSN  K+IGLKDL    K TVLYFYPGDFTSGCTIEAQ F+K+  +     A+IVGVSVD+ EKHL+F K Y L FPLLSD G  V++ YG+ L +  +G F+NR T++I   G ++ VFTDV+ K+  H+ EV+A L+ L K
Sbjct:   69 VSRRSFFSK-GAAAGVVTTGL----VQSAFAATPTIDAPAPDFELPSNRDKNIGLKDL--KGKWTVLYFYPGDFTSGCTIEAQNFEKNSKQIRDLGAEIVGVSVDSAEKHLDFAKKYGLSFPLLSDKGGKVSESYGTALKLGPIGTFSNRQTYLIDPSGNLKYVFTDVQSKIKVHAEEVVAKLSELTK 249          
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: A0A7S1FR32_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FR32_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.260e-43
Identity = 83/152 (54.61%), Postives = 106/152 (69.74%), Query Frame = 1
Query:  193 VGSMAPDFTLPSNTGK-DIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATLATL 645
            +G+ APDF LPS+TGK +  L+DL    K TVLYFYPG FTSGCT+EA+GFQ+D D Y + NAQ+VGVSVD +EK+  F  + +L F +LSD G  V+  Y S L +P  G F+NR T+IIG DG +  VF DVE +VA+HS EV+  L  L
Sbjct:   91 LGATAPDFDLPSSTGKGNTTLRDLTSKQKWTVLYFYPGAFTSGCTLEARGFQRDQDAYRSLNAQVVGVSVDPVEKNAQFCAAENLDFFMLSDFGGKVSKRYNSALTVPGFGTFSNRKTYIIGPDGTVRWVFEDVESRVARHSGEVIEKLREL 242          
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: B7G0F8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0F8_PHATC)

HSP 1 Score: 161 bits (407), Expect = 3.510e-43
Identity = 89/174 (51.15%), Postives = 117/174 (67.24%), Query Frame = 1
Query:  127 AAVATAGIAAAPLASVAAATPAVGSMAPDFTLPSNTGK-DIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATLATL 645
            AAVAT    +APL +   A P  G+ AP F LP++ G     LK+L+ + K TVLYFYPG F+ GCT+EA+GFQ+D ++Y A NAQIVGVSVD +EK+  F  +  L F +LSD G  V++LYGS L +P  G F+NR T+II  +G +  VFTDVE ++A+HS EVL  L  L
Sbjct:   37 AAVATGVTVSAPLPAF--AVPVTGAKAPFFELPNSRGSGSTSLKNLINSGKWTVLYFYPGAFSKGCTLEARGFQRDIERYRALNAQIVGVSVDPVEKNAQFCSAEGLDFYMLSDTGGRVSNLYGSALSVPGFGMFSNRQTYIIDPEGNLRWVFTDVESRIARHSVEVLEKLNEL 208          
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Match: A0A7S2R3P2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3P2_9STRA)

HSP 1 Score: 160 bits (405), Expect = 8.680e-43
Identity = 85/160 (53.12%), Postives = 106/160 (66.25%), Query Frame = 1
Query:  172 VAAATPAVGSMAPDFTLPSNT--GKDIGLKDLLKTAKHTVLYFYPGDFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFPLLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKVAKHSAEVLATLATL 645
            VAA  P+V + APDF LP++   G    L++L  T K TVLYFYPG FTSGCT+EA+GFQ+D+DKY  +N Q+VG+SVD  EK+  F +S  L F +LSDIG  V+  YGS L +P  G F+NR T++I   G I  VF DVE  VA HS EVL  L  L
Sbjct:   61 VAAPLPSVNTKAPDFLLPNSREDGSKTNLENLTSTKKWTVLYFYPGAFTSGCTLEARGFQRDYDKYRQSNVQVVGISVDPPEKNAKFCESEKLDFYMLSDIGGEVSKSYGSALSVPGFGTFSNRQTYVIDPQGMIRHVFVDVESHVASHSQEVLDKLQEL 220          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig136.2736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUV0_9PHAE9.360e-10078.28Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A835ZEZ0_9STRA8.720e-6271.52Peroxiredoxin family protein n=1 Tax=Tribonema min... [more]
A0A7S3UYL6_HETAK3.900e-6065.99Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1J8E5_GUITC3.630e-5161.44Peroxiredoxin n=2 Tax=Guillardia theta TaxID=55529... [more]
A0A4D9CLH8_9STRA1.890e-4858.17Thioredoxin domain-containing protein n=2 Tax=Mono... [more]
A0A7S0Z1C5_9CRYP2.110e-4757.59Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0U0Z0_HEMAN6.370e-4652.13Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S1FR32_9STRA2.260e-4354.61Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B7G0F8_PHATC3.510e-4351.15Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2R3P2_9STRA8.680e-4353.13Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig136contigL-elsbetiae_contig136:4624..8909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue4.7e-85
Seed eggNOG ortholog2880.D8LFG4
KEGG koko:K03564
Hectar predicted targeting categorychloroplast
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG1225@1,KOG0855@2759
EC1.11.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Ec32 ortholog descriptionPeroxiredoxin family protein
Ec32 orthologEc-04_002280.1
Exons6
Model size1447
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig136.2736.1prot_L-elsbetiae_contig136.2736.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig136 4627..8110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.5235744-UTR-L-elsbetiae_contig136:4623..46261622815526.5235744-UTR-L-elsbetiae_contig136:4623..4626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 4624..4626 +
1691682940.8382437-UTR-L-elsbetiae_contig136:4623..46261691682940.8382437-UTR-L-elsbetiae_contig136:4623..4626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 4624..4626 +
1622815526.5996172-UTR-L-elsbetiae_contig136:8110..89091622815526.5996172-UTR-L-elsbetiae_contig136:8110..8909Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 8111..8909 +
1691682940.9010262-UTR-L-elsbetiae_contig136:8110..89091691682940.9010262-UTR-L-elsbetiae_contig136:8110..8909Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig136 8111..8909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.5344512-CDS-L-elsbetiae_contig136:4626..48071622815526.5344512-CDS-L-elsbetiae_contig136:4626..4807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 4627..4807 +
1691682940.8481293-CDS-L-elsbetiae_contig136:4626..48071691682940.8481293-CDS-L-elsbetiae_contig136:4626..4807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 4627..4807 +
1622815526.5447176-CDS-L-elsbetiae_contig136:5375..54921622815526.5447176-CDS-L-elsbetiae_contig136:5375..5492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 5376..5492 +
1691682940.856026-CDS-L-elsbetiae_contig136:5375..54921691682940.856026-CDS-L-elsbetiae_contig136:5375..5492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 5376..5492 +
1622815526.5575368-CDS-L-elsbetiae_contig136:5915..59501622815526.5575368-CDS-L-elsbetiae_contig136:5915..5950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 5916..5950 +
1691682940.86395-CDS-L-elsbetiae_contig136:5915..59501691682940.86395-CDS-L-elsbetiae_contig136:5915..5950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 5916..5950 +
1622815526.56978-CDS-L-elsbetiae_contig136:6347..64251622815526.56978-CDS-L-elsbetiae_contig136:6347..6425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 6348..6425 +
1691682940.8718562-CDS-L-elsbetiae_contig136:6347..64251691682940.8718562-CDS-L-elsbetiae_contig136:6347..6425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 6348..6425 +
1622815526.5796282-CDS-L-elsbetiae_contig136:7041..72031622815526.5796282-CDS-L-elsbetiae_contig136:7041..7203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 7042..7203 +
1691682940.8797567-CDS-L-elsbetiae_contig136:7041..72031691682940.8797567-CDS-L-elsbetiae_contig136:7041..7203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 7042..7203 +
1622815526.5896113-CDS-L-elsbetiae_contig136:8038..81101622815526.5896113-CDS-L-elsbetiae_contig136:8038..8110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 8039..8110 +
1691682940.891504-CDS-L-elsbetiae_contig136:8038..81101691682940.891504-CDS-L-elsbetiae_contig136:8038..8110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig136 8039..8110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig136.2736.1

>prot_L-elsbetiae_contig136.2736.1 ID=prot_L-elsbetiae_contig136.2736.1|Name=mRNA_L-elsbetiae_contig136.2736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp
MAYLSFLAAILLGVPAANAFFMSSAGGGVQRADFLKQVGGAAAVATAGIA
AAPLASVAAATPAVGSMAPDFTLPSNTGKDIGLKDLLKTAKHTVLYFYPG
DFTSGCTIEAQGFQKDFDKYGAANAQIVGVSVDTIEKHLNFEKSYSLQFP
LLSDIGASVADLYGSKLDIPFMGKFANRLTFIIGSDGKIEKVFTDVEGKV
AKHSAEVLATLATL*
back to top

mRNA from alignment at L-elsbetiae_contig136:4624..8909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig136.2736.1 ID=mRNA_L-elsbetiae_contig136.2736.1|Name=mRNA_L-elsbetiae_contig136.2736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4286bp|location=Sequence derived from alignment at L-elsbetiae_contig136:4624..8909+ (Laminarionema elsbetiae ELsaHSoW15)
ATCATGGCCTACCTCTCTTTTCTAGCTGCCATCCTTTTGGGTGTTCCGGC AGCTAATGCATTTTTCATGTCGTCTGCCGGCGGCGGCGTGCAGAGAGCCG ACTTTCTGAAGCAGGTTGGAGGAGCTGCTGCTGTCGCCACGGCAGGCATC GCGGCGGCTCCCCTGGCTTCAGTCGCGGCGGCAAGTAAGTGCACTTTTCA GGCGGTAGCCTGTGTGACCTACTGATCCTTCATCAAGCAATTGGGTTGAT TGACTCAGTTTTAGCAGTTGCGCCGCTCCGAAAAAAGGGATCATGTGAAC GTGTTCATGCAAAATGTGTTGGATCGTTCGACGTCGACAAGACGTTGTTA CCGTTTATTGACGGAGTGAAGAGTTTTGTTCCCAAGAAAATGCAGCGGTA GGGCCCATTTTAGGTCCGATTTCCGGGTGCCCGCTTCTTGCGATGAAGAG CGAATGCACACCAGCACCAGGTTCGGCGAGATTTTTTTAATTTGTCAAAG TAAGCCAGCGTATTAGGCCTCGAACGAGGATCCGGGTAAATGGGTAGTAC TACTACATACATGTAACGTACGAACTAATGTCTACAGATGTTATGTCCTT TCGTTACAGGTATTCCGTTTCTATCCTGGGCAGAGATACAGTGATGCCCC CCCTTCTAGCCACGGGCCGTGATGTCGATGGGTTGCAACGATAAACGATT TCGAATGCGCAAGCGCCTTACAGCTCCCTCCCGCTATTTATTGTGTTTGC AGCGCCCGCGGTTGGGAGCATGGCCCCCGATTTCACGCTCCCGAGCAACA CCGGCAAGGACATCGGACTGAAGGACTTGCTCAAGACGGCCAAGCACACG GTGCTGTACTTCTACCCAGGTGAGCCGGCAGGCCCTAAATAGGACTTTCC CCTATTGTAAATGGCACACCTGTTCGGACCCATATACTAGTACCATCAGT ACGTCCAAGCGTTGTGCGCCAGCACGATTTCTTATGGGGTTCGTGTCAAC TCGCTTACCACACGGGAAATTTTGCATGGCGTTGTCGCCACCACTTGTAG ATATATCCGTCTTTGGGCGTATTCGGCATCCCCAATGCGAGATCATGCTT GCACGTTGTGATGGGCATGCAGCAGGTACAATTAGCGTCCCATTTGGGAT TCCTTTTTTGTACATCTCGGGCTCCCTCTCTCTTTCTCTCTTACTTTCTC TGTCTCGTCTCTCGACGGTCCCCCCCCCTCTTCCTCTGTTTCCAGTAACT CCTGCTCCTTCGTATTTCATGTTCGTCGTGTGCTCCTCACAGGTGATTTC ACTTCGGGCTGCACCATCGAAGCTCAGGTAAAAGAGGGTTTTCGTCTTCT CAGCAACTCTTTTTTTTGTTCGCGTAAGTCAGATACGTGCCTACGAATCG GTCGATCGGTACTTACTCAGAGGCCCCTTTTTATGTCTGCCTCCTGGGCT CAGCCGTTTTTTTTGTTTGTTTGCATCGAGTACCAGCGGGTGTCTCGGAA TGTGGCCGCGCTAAATAGAGAGGTGGATAAAGGTAACCCTTTCAACGACC CATTATTCCGCCCTCCGGGTATGGTTCCATGTTAGTTCAGTGCCGTTTGA CGAAGAGCAGTCTCAGTTCATGGCACGTTACTCTTCCCCGCTACCATTCT GCCCCCTCAAGGCGGCATTTTTCGTTCTTCCCCCGCGCGTTATCTCCCAT CTTCACGTTGTGTCTGGTGAGTAGGGTTTCCAGAAGGACTTCGACAAGTA CGGCGCGGCCAACGCGCAGATCGTGGGCGTTAGCGTGGATACCATCGAGA AGGTGCGGAGTGTGATCCCGCAAAAAAGGAGTTGAACCGCCTGATCGTTT TTGTCGTCTCGTTCGATGTGTGCAATCGTGATATGTAGATGCGAGCTTTC TCAACCACGTTCACGAACTCCAGGTAGGCTCGGCCTCTTCTTTGACCGGC TGTGTCCACTCTCCGTGTCGAATCTTCTTCGAACTGGGTGCTACGTTTGT TGTTGCCAATATAATAGTGATTTGGTAGCGGTGCATTTGCTGCATACACA ACCGCATTGTTTCATGGGGCGGTTCTTTGCATGTTCGCAGTCGCTTGCCC ATTTTCGTGTCATTTTTGCCGCAGCTTGATTTCGTATTGAACTGGTTCAG CGCGTAAAGTTGGACAATCCACAACCATCGCCCTCTCTTTTGCTTTGTTT CACCCCTCACTCACTGCTGTACATGTATGTACATGCCAGCACGCGTTCAC TCCCCTGTTTCTTGTATTTAACATACTTCTATATAGTCTGTAAGGCGGTA CTGGTTTCGTTGTGACTGCTATTGTTTCCGAACTCTTCTCTAACATCCAG CCCCTCCTTTACATCCCGTGCCTTTCTGCCTTACCCGCTCTGATTCGCCC AACGTGCGGATGTATCAGCACCTCAACTTTGAGAAGTCGTACAGCCTCCA GTTCCCTCTCCTGTCCGACATCGGCGCGAGCGTTGCCGATCTGTACGGCT CGAAGCTCGACATCCCCTTCATGGGCAAATTTGCGAACCGGCTGACGTTC ATCATCGGCTCCGACGGGAAGATAGAGAAGGTATGTGACATCAAGGGTAA ATATTTGCAAGACGGAAATGTGAATACAGCCGTGTTGTGTTGCGAGCTTC GCGTGCTCCCGCTGCGTAATCGCGAAAAACTTGTGTTTGTGGTGCGACCT TCGCGTCCTCCCGCGCGTAATCGCGAAAACCTTGTGGCCTTATAATCGAA AGCACACGGGAGCATCCCAAGTGTTGTCTTTTTGTGGAGTGCGTGTGTCG CCTGTTGTTTTGACACAGATTTTGCGAAGGCACAGGTGAGCGTAGTTGTT GTGTTTGATGGGAACATGCGCGCACCGGAGTTGTACAATAGTTTGATGGG AACATGCGTCCAACTTGATGACTTAGCCTCTTCCAAGAATCAACATTGAT CAAAGCAAACCTGCGGGCTACCACGCATACTACGACCCCGTATTGCGCGT CTACTTCAAAGTACGCCGCTGAATATGTTGTACTCCTTGCCCGTGATACA TAAATCATCCAAAACTTCAGCCACGTTTCTGACATGACTCACGTTAGGAT GCACTTCGCGTTTGGGGTGGGGCTTGAGCTTGCCATGCAGTCCAGGCAGC GCTGTCGTTGTTGGGATGCGATGCCTTTCAGGTGTTAGCACTTAAAACTA CTGCCTCGGCAACCTCGTAGATACGATGCGGAGCCTTCTGCCCCCGCACT CCCCCCACATGACCGGCACGTGTTTGCATGATTCCACGGATGCTACAAGG CAGAGTCGGGGCACTTCGCTGGCGCCCACAAAACACTCATACAGCCAACG TTTATGCATCCATCTGTCTCCCGTTACTATCGCCACCGTTTCCTTCACAC GTGTCTTTGAAACAGGTGTTCACGGACGTGGAAGGAAAGGTGGCAAAGCA CTCCGCAGAAGTGCTGGCGACTCTCGCAACCCTCTAGAAAAATATGTGTG GGGCTCTTAGGGCGTTGTGTGTCCTGCCGCGTCGTCTCAGGAAGAGGTTA AAATATTACTGCTGTGCCAGCGGATGACAAGTCACTTTGATTTGCTTTTC AACGTCGTTGCTAAGACTTTTTCCACCGACTTCCTCTTGTCTGGATTCGG AGGTTTTGGTCTGTGAAGGATGAAACTGTTGCCCACCAACGCAGCGTGTT TAGACTGGCCTTCGACCCTTCGTGTTTCTCGCGGTGTACGCGCTGTTAGG GATTTCCACCTATGGGCGCATTGTGGTTTGTTCTACATTGTTAACGCGTG TTTCGTTCACGGGTATGGATTACGGCTCGCTCGCAGTGTAACATAAGGTG GGCCGCTCAAAGAACAAGACGCAGCAGAACATGGACACAGGTTCGGTGTT GTTTCGACACCCTCTACTCAGCGAGGGCGAACGCTTTACCATACAACCAG AAACGCCACACAGAATGGAGCGACCGCCTAGCAATCGCGGTTTTGTTTAA GGCTGCAGTGAGGGGTACCCGTTGATCAGTGTAGACCTTTCTCGAAGAAT AATCGCATACCCCCGCTGAACATCACGGAGCCTCACTTGGAAGTTTGGGT GGGCTTTCCAATACTGCCCGCATGTTCTGGCAGTGCAGCCAAAAACAGAG GTGTTCCGAGGTTGTCGGCTCTTTTTTTGTCGTGTTTGCGGTTAGTTTTT AGACCACCCCTTGCGCGTGTGAACTGATAAGTATGCTGAAATTTGCTGCT GTACCCGTCGAAAATTCTACACCCTTTCAAAACAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig136:4624..8909+

>mRNA_L-elsbetiae_contig136.2736.1 ID=mRNA_L-elsbetiae_contig136.2736.1|Name=mRNA_L-elsbetiae_contig136.2736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig136:4624..8909+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTACCTCTCTTTTCTAGCTGCCATCCTTTTGGGTGTTCCGGCAGC
TAATGCATTTTTCATGTCGTCTGCCGGCGGCGGCGTGCAGAGAGCCGACT
TTCTGAAGCAGGTTGGAGGAGCTGCTGCTGTCGCCACGGCAGGCATCGCG
GCGGCTCCCCTGGCTTCAGTCGCGGCGGCAAATGGCCTACCTCTCTTTTC
TAGCTGCCATCCTTTTGGGTGTTCCGGCAGCTAATGCATTTTTCATGTCG
TCTGCCGGCGGCGGCGTGCAGAGAGCCGACTTTCTGAAGCAGGTTGGAGG
AGCTGCTGCTGTCGCCACGGCAGGCATCGCGGCGGCTCCCCTGGCTTCAG
TCGCGGCGGCAACGCCCGCGGTTGGGAGCATGGCCCCCGATTTCACGCTC
CCGAGCAACACCGGCAAGGACATCGGACTGAAGGACTTGCTCAAGACGGC
CAAGCACACGGTGCTGTACTTCTACCCAGCGCCCGCGGTTGGGAGCATGG
CCCCCGATTTCACGCTCCCGAGCAACACCGGCAAGGACATCGGACTGAAG
GACTTGCTCAAGACGGCCAAGCACACGGTGCTGTACTTCTACCCAGGTGA
TTTCACTTCGGGCTGCACCATCGAAGCTCAGGTGATTTCACTTCGGGCTG
CACCATCGAAGCTCAGGGTTTCCAGAAGGACTTCGACAAGTACGGCGCGG
CCAACGCGCAGATCGTGGGCGTTAGCGTGGATACCATCGAGAAGGGTTTC
CAGAAGGACTTCGACAAGTACGGCGCGGCCAACGCGCAGATCGTGGGCGT
TAGCGTGGATACCATCGAGAAGCACCTCAACTTTGAGAAGTCGTACAGCC
TCCAGTTCCCTCTCCTGTCCGACATCGGCGCGAGCGTTGCCGATCTGTAC
GGCTCGAAGCTCGACATCCCCTTCATGGGCAAATTTGCGAACCGGCTGAC
GTTCATCATCGGCTCCGACGGGAAGATAGAGAAGCACCTCAACTTTGAGA
AGTCGTACAGCCTCCAGTTCCCTCTCCTGTCCGACATCGGCGCGAGCGTT
GCCGATCTGTACGGCTCGAAGCTCGACATCCCCTTCATGGGCAAATTTGC
GAACCGGCTGACGTTCATCATCGGCTCCGACGGGAAGATAGAGAAGGTGT
TCACGGACGTGGAAGGAAAGGTGGCAAAGCACTCCGCAGAAGTGCTGGCG
ACTCTCGCAACCCTCTAGGTGTTCACGGACGTGGAAGGAAAGGTGGCAAA
GCACTCCGCAGAAGTGCTGGCGACTCTCGCAACCCTCTAG
back to top