mRNA_L-elsbetiae_contig13588.2726.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI) HSP 1 Score: 122 bits (305), Expect = 7.060e-28 Identity = 68/106 (64.15%), Postives = 75/106 (70.75%), Query Frame = 3 Query: 615 EDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKV------------------KGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 +DPS+MR SRRIARSG+ASRREAER+VEAGVV VNG VQTPALNVG RDIVKV +G+ LERPE HT +LWM HK R ELVTRHD GR Sbjct: 108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGR 213
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE) HSP 1 Score: 112 bits (279), Expect = 2.320e-25 Identity = 67/126 (53.17%), Postives = 75/126 (59.52%), Query Frame = 3 Query: 609 QMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVK------------------------------------GRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 +++DPS+MR SRRIARSG+ASRREAER+VEAGVV VNG VQTPALNVG RDIVKV G+ LERPE HT +LWM HK R ELVTR D GR Sbjct: 106 KIKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFLQLGNGADYRFFVQVDFDALLLCLSYLSDTALGKVLERPESHTPKLWMVHKMRNELVTRDDPEGR 231
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A1H7NFQ5_9RHOB (Pseudouridine synthase n=2 Tax=Roseovarius azorensis TaxID=1287727 RepID=A0A1H7NFQ5_9RHOB) HSP 1 Score: 77.8 bits (190), Expect = 5.790e-13 Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 3 Query: 603 RLQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 R+ ++ PS R ++ IAR+G+ASRREAERL+EAG VTVNG + ALNV D + V GRAL+ PE LW+ HK + T D GR Sbjct: 18 RMSIKPPSGERIAKVIARAGIASRREAERLIEAGRVTVNGRKIDRAALNVTPNDKIAVDGRALDAPEP--ARLWLYHKPVGRVTTSRDEQGR 107
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A2M7F0C1_9RHOB (Pseudouridine synthase n=1 Tax=Rhodobacteraceae bacterium CG17_big_fil_post_rev_8_21_14_2_50_63_15 TaxID=1974082 RepID=A0A2M7F0C1_9RHOB) HSP 1 Score: 76.6 bits (187), Expect = 1.290e-12 Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 3 Query: 603 RLQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 R+ E S R ++ IAR+G+ASRR+AERL+EAG VTVNG + +PALNV D + V GR LE PE LW+ HK + T D GR Sbjct: 4 RMSTEPSSGDRIAKVIARAGIASRRDAERLIEAGRVTVNGQKIVSPALNVTPADRITVDGRPLEAPEP--ARLWLYHKPAGRVTTSRDEQGR 93
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A3M2ENI0_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2ENI0_9PROT) HSP 1 Score: 75.9 bits (185), Expect = 3.160e-12 Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 606 LQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 ++ D S R +RR+AR+G+ASRR AERL+ G V VNG + TPALNVG RD+++V GR L PE + LW HK + + D GR Sbjct: 1 MEDRDDSAERIARRLARAGLASRRGAERLIAEGRVRVNGRLIDTPALNVGPRDLIEVDGRPLPAPEP--VRLWRYHKPAGLVTSAADEKGR 89
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A350AJK0_9RHOB (Pseudouridine synthase (Fragment) n=2 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A350AJK0_9RHOB) HSP 1 Score: 76.6 bits (187), Expect = 3.530e-12 Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 3 Query: 648 IARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 IAR+G+ASRR+AE+LVE G VTVNG PV +PA NVG +D V V GR L+ PE LW+ HK + T D GR Sbjct: 15 IARAGVASRRDAEKLVEEGAVTVNGKPVTSPATNVGPKDRVAVNGRVLDPPEP--TRLWLYHKPTGLVTTAKDEEGR 89
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A0N7M8E9_9RHOB (Pseudouridine synthase n=2 Tax=Shimia thalassica TaxID=1715693 RepID=A0A0N7M8E9_9RHOB) HSP 1 Score: 74.7 bits (182), Expect = 6.960e-12 Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 3 Query: 606 LQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 + E P R ++ +AR+G+ASRREAER++EAG VTVNG +Q+PALNV D + V G+ L PE LW+ HK + + D GR Sbjct: 1 MTQETPKGDRIAKVLARAGVASRREAERMIEAGRVTVNGRKIQSPALNVTAEDKITVDGKPLSEPEPE--RLWLYHKPTGLVTSHKDEQGR 89
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A6N8A6L7_9HYPH (Pseudouridine synthase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N8A6L7_9HYPH) HSP 1 Score: 74.7 bits (182), Expect = 8.140e-12 Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 3 Query: 600 LRLQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 LR+ P R ++ +AR+G+ASRREAER++EAG VTVNG + +PALNV RD + V G+ + PE LW+ HK + T D GR Sbjct: 20 LRMSNTPPPGDRIAKVLARAGIASRREAERMIEAGRVTVNGKAIDSPALNVTARDKITVDGKPVSEPEP--ARLWLYHKPVGLVTTTRDEKGR 110
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A3W2L8_9RHOB (Pseudouridine synthase n=5 Tax=Roseovarius TaxID=74030 RepID=A3W2L8_9RHOB) HSP 1 Score: 74.3 bits (181), Expect = 8.550e-12 Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 603 RLQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 R+ + P R ++ IAR+G+ASRREAERL+EAG VTVNG V ALNV D V V GRAL+ PE LW+ HK + T D GR Sbjct: 6 RMNTKTPEGERIAKVIARAGIASRREAERLIEAGRVTVNGQKVLRAALNVTPADKVVVDGRALDAPEP--ARLWLYHKPTGLVTTTRDEQGR 95
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A4Q2A4M9_9RHOB (Pseudouridine synthase n=2 Tax=unclassified Roseovarius TaxID=2614913 RepID=A0A4Q2A4M9_9RHOB) HSP 1 Score: 74.3 bits (181), Expect = 8.550e-12 Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = 3 Query: 606 LQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878 + P R ++ IAR+G ASRREAERL+EAG VTVNG + ALNV D V V GRAL+ PE LW+ HK R + T D GR Sbjct: 1 MDSNTPKGERIAKVIARAGRASRREAERLIEAGRVTVNGQKITRAALNVTPADRVTVDGRALDAPEPP--RLWLYHKPRGRVTTTSDEQGR 89 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13588.2726.1 >prot_L-elsbetiae_contig13588.2726.1 ID=prot_L-elsbetiae_contig13588.2726.1|Name=mRNA_L-elsbetiae_contig13588.2726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp MEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRback to top mRNA from alignment at L-elsbetiae_contig13588:3023..4218+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13588.2726.1 ID=mRNA_L-elsbetiae_contig13588.2726.1|Name=mRNA_L-elsbetiae_contig13588.2726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1196bp|location=Sequence derived from alignment at L-elsbetiae_contig13588:3023..4218+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13588:3023..4218+ >mRNA_L-elsbetiae_contig13588.2726.1 ID=mRNA_L-elsbetiae_contig13588.2726.1|Name=mRNA_L-elsbetiae_contig13588.2726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig13588:3023..4218+ (Laminarionema elsbetiae ELsaHSoW15)back to top |