prot_L-elsbetiae_contig13588.2726.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig13588.2726.1
Unique Name	prot_L-elsbetiae_contig13588.2726.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	90

Homology

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 9.370e-31
Identity = 68/106 (64.15%), Postives = 75/106 (70.75%), Query Frame = 0

Query:    2 EDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKV------------------KGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            +DPS+MR SRRIARSG+ASRREAER+VEAGVV VNG  VQTPALNVG RDIVKV                  +G+ LERPE HT +LWM HK R ELVTRHD  GR
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGR 213

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.920e-18
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 0

Query:    1 MEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKV 55
            ++DPS+MR SRRIARSG+ASRREAER+VEAGVV VNG  VQTPALNVG RDIVKV
Sbjct:  107 IKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKV 161

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A350AJK0_9RHOB (Pseudouridine synthase (Fragment) n=2 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A350AJK0_9RHOB)

HSP 1 Score: 76.6 bits (187), Expect = 1.820e-14
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 0

Query:   13 IARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            IAR+G+ASRR+AE+LVE G VTVNG PV +PA NVG +D V V GR L+ PE     LW+ HK    + T  D  GR
Sbjct:   15 IARAGVASRRDAEKLVEEGAVTVNGKPVTSPATNVGPKDRVAVNGRVLDPPEP--TRLWLYHKPTGLVTTAKDEEGR 89

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A3M2ENI0_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2ENI0_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 3.550e-14
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 0

Query:    3 DPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            D S  R +RR+AR+G+ASRR AERL+  G V VNG  + TPALNVG RD+++V GR L  PE   + LW  HK    + +  D  GR
Sbjct:    5 DDSAERIARRLARAGLASRRGAERLIAEGRVRVNGRLIDTPALNVGPRDLIEVDGRPLPAPEP--VRLWRYHKPAGLVTSAADEKGR 89

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A4R7BRR5_9HYPH (Pseudouridine synthase n=2 Tax=Enterovirga rhinocerotis TaxID=1339210 RepID=A0A4R7BRR5_9HYPH)

HSP 1 Score: 75.9 bits (185), Expect = 4.240e-14
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0

Query:    4 PSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            PS  R ++ IAR+G+ASRR+AE ++EAG VT+NG P+ +PA+NVG  D++ V G AL  P      LW+ HK R  + T  D  GR
Sbjct:  104 PSEERIAKVIARAGVASRRDAEAMIEAGRVTLNGAPLTSPAINVGPNDVITVDGEAL--PSRERTRLWLFHKPRGLVTTFRDPEGR 187

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A1H7NFQ5_9RHOB (Pseudouridine synthase n=2 Tax=Roseovarius azorensis TaxID=1287727 RepID=A0A1H7NFQ5_9RHOB)

HSP 1 Score: 74.7 bits (182), Expect = 4.410e-14
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 0

Query:    1 MEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            ++ PS  R ++ IAR+G+ASRREAERL+EAG VTVNG  +   ALNV   D + V GRAL+ PE     LW+ HK    + T  D  GR
Sbjct:   21 IKPPSGERIAKVIARAGIASRREAERLIEAGRVTVNGRKIDRAALNVTPNDKIAVDGRALDAPEP--ARLWLYHKPVGRVTTSRDEQGR 107

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A6L8LKL0_9RHOB (Pseudouridine synthase n=2 Tax=Thalassobius TaxID=335927 RepID=A0A6L8LKL0_9RHOB)

HSP 1 Score: 74.7 bits (182), Expect = 6.770e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 0

Query:    2 EDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            + P+  R ++ IAR+G+ASRREAE+L+EAG V+VNG  + +PALNV  RD V V G+ LE PE     +W+ HK    + T  D  GR
Sbjct:    3 DTPAGERIAKVIARAGLASRREAEKLIEAGRVSVNGKKIDSPALNVTARDKVVVDGKTLEAPEPP--RIWLYHKPTGLVTTHKDEQGR 88

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A3SRI5_ROSNI (Pseudouridine synthase n=5 Tax=Roseovarius TaxID=74030 RepID=A3SRI5_ROSNI)

HSP 1 Score: 73.9 bits (180), Expect = 7.480e-14
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 0

Query:   13 IARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            IAR+G+ASRREAER+VEAG VTVNG  + +PALNV   D + V GRAL  PE     LW+ HK    + T  D  GR
Sbjct:   15 IARAGLASRREAERMVEAGRVTVNGRKIDSPALNVTPSDKITVDGRALATPEPP--RLWLYHKPTGLVTTTRDEQGR 89

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A2M7F0C1_9RHOB (Pseudouridine synthase n=1 Tax=Rhodobacteraceae bacterium CG17_big_fil_post_rev_8_21_14_2_50_63_15 TaxID=1974082 RepID=A0A2M7F0C1_9RHOB)

HSP 1 Score: 73.9 bits (180), Expect = 7.570e-14
Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 0

Query:   13 IARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            IAR+G+ASRR+AERL+EAG VTVNG  + +PALNV   D + V GR LE PE     LW+ HK    + T  D  GR
Sbjct:   19 IARAGIASRRDAERLIEAGRVTVNGQKIVSPALNVTPADRITVDGRPLEAPEP--ARLWLYHKPAGRVTTSRDEQGR 93

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BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A4Q2A4M9_9RHOB (Pseudouridine synthase n=2 Tax=unclassified Roseovarius TaxID=2614913 RepID=A0A4Q2A4M9_9RHOB)

HSP 1 Score: 73.9 bits (180), Expect = 7.570e-14
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 0

Query:    4 PSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            P   R ++ IAR+G ASRREAERL+EAG VTVNG  +   ALNV   D V V GRAL+ PE     LW+ HK R  + T  D  GR
Sbjct:    6 PKGERIAKVIARAGRASRREAERLIEAGRVTVNGQKITRAALNVTPADRVTVDGRALDAPEPP--RLWLYHKPRGRVTTTSDEQGR 89

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LDE8_ECTSI	9.370e-31	64.15	RNA pseudouridylate synthase domain-containing pro...	[more]
A0A6H5J9J6_9PHAE	9.920e-18	81.82	S4 domain-containing protein n=1 Tax=Ectocarpus sp...	[more]
A0A350AJK0_9RHOB	1.820e-14	54.55	Pseudouridine synthase (Fragment) n=2 Tax=Rhodobac...	[more]
A0A3M2ENI0_9PROT	3.550e-14	49.43	Pseudouridine synthase n=1 Tax=Alphaproteobacteria...	[more]
A0A4R7BRR5_9HYPH	4.240e-14	47.67	Pseudouridine synthase n=2 Tax=Enterovirga rhinoce...	[more]
A0A1H7NFQ5_9RHOB	4.410e-14	49.44	Pseudouridine synthase n=2 Tax=Roseovarius azorens...	[more]
A0A6L8LKL0_9RHOB	6.770e-14	47.73	Pseudouridine synthase n=2 Tax=Thalassobius TaxID=...	[more]
A3SRI5_ROSNI	7.480e-14	54.55	Pseudouridine synthase n=5 Tax=Roseovarius TaxID=7...	[more]
A0A2M7F0C1_9RHOB	7.570e-14	53.25	Pseudouridine synthase n=1 Tax=Rhodobacteraceae ba...	[more]
A0A4Q2A4M9_9RHOB	7.570e-14	52.33	Pseudouridine synthase n=2 Tax=unclassified Roseov...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 7..68 e-value: 5.2E-6 score: 36.0
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 13..53 e-value: 4.6E-10 score: 39.1
IPR002942	RNA-binding S4 domain	PROSITE	PS50889	S4	coord: 7..73 score: 10.565
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 4..62 e-value: 4.5E-15 score: 56.7
None	No IPR available	PANTHER	PTHR21600:SF2	RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B	coord: 3..89
None	No IPR available	PANTHER	PTHR21600	RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B	coord: 3..89
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 11..88

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig13588	contig	L-elsbetiae_contig13588:3634..4218 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig13588.2726.1	mRNA_L-elsbetiae_contig13588.2726.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig13588 3023..4218 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig13588.2726.1 ID=prot_L-elsbetiae_contig13588.2726.1|Name=mRNA_L-elsbetiae_contig13588.2726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLR
DIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGRW

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002942	S4_RNA-bd
IPR036986	S4_RNA-bd_sf