mRNA_L-elsbetiae_contig13586.2725.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13586.2725.1
Unique NamemRNA_L-elsbetiae_contig13586.2725.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 5.280e-98
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 1 
Query:   88 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 534
            MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRK+QLGPEG+KVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 149
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A482RW16_9ARCH (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW16_9ARCH)

HSP 1 Score: 248 bits (633), Expect = 3.450e-79
Identity = 113/150 (75.33%), Postives = 132/150 (88.00%), Query Frame = 1 
Query:   85 KMRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 534
            +M+ +L+GL+VFFPYD+MY EQYDYML LKR++DAKGH LLEMPTGTGKTVCLISLITSYQF +P+ GKLIYCTRTVPEM KC++E+K+VI YR++ LGPEG +VLALCLSSRRN+CIH RV EESDRE VD  CRDMTASWVR  A+ G
Sbjct:   21 EMKFNLEGLEVFFPYDYMYKEQYDYMLNLKRAIDAKGHALLEMPTGTGKTVCLISLITSYQFQYPQTGKLIYCTRTVPEMAKCMDEIKKVIEYRQKLLGPEGGRVLALCLSSRRNMCIHPRVQEESDRETVDTKCRDMTASWVRASAQKG 170
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 258 bits (660), Expect = 7.950e-78
Identity = 119/145 (82.07%), Postives = 135/145 (93.10%), Query Frame = 1 
Query:   88 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKK 522
            +R DLDGLD+FFPYD +Y EQY+YMLELKR+LDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEM+KC+EE+++VI YR + +G EG KVLA+CLSSRRNLCIHERV+EESDREAVD ACR MTASWVR++
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGKVLAVCLSSRRNLCIHERVMEESDREAVDSACRSMTASWVRQR 146
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.170e-75
Identity = 115/146 (78.77%), Postives = 132/146 (90.41%), Query Frame = 1 
Query:   88 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 525
            M   L  + V+FPYD+ YPEQY YM ELK +LDAKGHCLLEMPTGTGKTVCLI+LIT+YQ+ HPEVGKLIYCTRTVPEM+KC+EE+KRVI YR+EQLGP G KVLALCLSSRRNLCIH+RV+E++DREAVDGACRDMTASWVR++A
Sbjct:    1 MIFTLGDITVWFPYDYCYPEQYAYMSELKTTLDAKGHCLLEMPTGTGKTVCLIALITAYQYQHPEVGKLIYCTRTVPEMVKCVEEIKRVIRYREEQLGPAGSKVLALCLSSRRNLCIHQRVLEDADREAVDGACRDMTASWVRQRA 146
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 243 bits (619), Expect = 6.200e-72
Identity = 112/156 (71.79%), Postives = 131/156 (83.97%), Query Frame = 1 
Query:   67 PHQDTGKMRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 534
            P  D   MR  L+ +DVFFPY  +Y EQ+DYM+ELKR+L+A GH  LEMPTGTGKTVCL+SLITS QFA PE+GK IYCTRTVPEM+KC+EELKRV+ YR E +G EG K+LALCLSSRRN+CIH+RV+EESDREAVD ACR MTASWVRK+A+ G
Sbjct:   38 PVPDDAAMRFRLEDVDVFFPYPSVYREQFDYMVELKRALEAPGHAALEMPTGTGKTVCLMSLITSVQFARPEMGKFIYCTRTVPEMVKCVEELKRVVNYRAECVGAEGRKILALCLSSRRNMCIHDRVLEESDREAVDAACRSMTASWVRKRAQEG 193
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A7S1CFN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFN5_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.820e-68
Identity = 106/155 (68.39%), Postives = 121/155 (78.06%), Query Frame = 1 
Query:   88 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLD----------AKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKK 522
            M+  LDGL V+FPY ++Y EQ  YM ELKR+LD          AKGHC+LEMPTGTGKTV L+SLITSYQ AHP VGKL+YCTRTVPEM KC+ ELKRVI YR ++LGPEG  VLA CLSSRRN+CIHERV+ E+DRE VD ACR  TA WVR+K
Sbjct:    1 MKFLLDGLQVYFPYPYVYSEQLKYMRELKRALDVAFAPGVSTTAKGHCMLEMPTGTGKTVALLSLITSYQLAHPTVGKLMYCTRTVPEMTKCVGELKRVIEYRVKELGPEGGNVLACCLSSRRNMCIHERVMAEADREQVDAACRKRTAPWVREK 155
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A7S0S086_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S086_9CHLO)

HSP 1 Score: 216 bits (551), Expect = 2.600e-67
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 1 
Query:   88 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 525
            MR  L+GL V+FPY+++YPEQY YMLELKRSLDA+GH LLEMPTGTGKT+ L+SLITSYQ AHPEVGKL+YCTRTVPEM K + EL+ +I YR + LGP+   ++AL LSSR+NLC+H  V EE  RE+VD  CR +TASWVR++A
Sbjct:    1 MRFKLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHSLLEMPTGTGKTITLLSLITSYQLAHPEVGKLVYCTRTVPEMEKVLAELQELIAYRSKYLGPDAAPIMALGLSSRKNLCVHPTVAEEGSRESVDSGCRKLTASWVRERA 146
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A835XSX7_9CHLO (Helicase ATP-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSX7_9CHLO)

HSP 1 Score: 213 bits (543), Expect = 1.570e-66
Identity = 97/146 (66.44%), Postives = 118/146 (80.82%), Query Frame = 1 
Query:   88 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 525
            M+ +L+GL V+FPY+++YPEQY YMLELKRSLDA+GHCLLEMPTGTGKT+ L+SLITSYQ AH EVGKLIYCTRTVPEM K + EL  ++ YR + L      +LAL LSSR+NLC+H RV EE  RE+VD  CR +TASWVR++A
Sbjct:    1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHCLLEMPTGTGKTITLLSLITSYQLAHKEVGKLIYCTRTVPEMEKVLSELSELVSYRSQHLPQGAGSILALGLSSRKNLCVHPRVAEEGSRESVDAGCRRLTASWVRERA 146
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A7R9TIP8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIP8_9VIRI)

HSP 1 Score: 209 bits (532), Expect = 2.300e-66
Identity = 99/151 (65.56%), Postives = 119/151 (78.81%), Query Frame = 1 
Query:   88 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIE--ESDREAVDGACRDMTASWVRKKAEAG 534
            M+ +LDG+DV+FPYD++YPEQY+YMLELKR+LDAKGHCLLEMPTGTGKT+ L+SLITSYQ A+P VGKL+YCTRTVPEM K + ELK +   R   LG      LAL LSSRRN+CI+E V+    +DRE+VD  CR +TASWVR  AE G
Sbjct:    1 MKFNLDGMDVYFPYDYIYPEQYEYMLELKRTLDAKGHCLLEMPTGTGKTITLLSLITSYQVANPGVGKLVYCTRTVPEMEKVMAELKHLHSMRAHDLGERAKNFLALVLSSRRNMCINESVLAGAATDRESVDSRCRRLTASWVRDSAEVG 151
[Close]
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A7S2GG08_9STRA (DNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG08_9STRA)

HSP 1 Score: 220 bits (561), Expect = 6.700e-66
Identity = 110/181 (60.77%), Postives = 132/181 (72.93%), Query Frame = 1 
Query:    1 QRSGE*DVPSCCTAGVPSQ*LCPHQDTGKMRL--DLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEG--DKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEA 531
            Q S +   P+C   G P     P   +  + +   L+G+DV+FPY  MYPEQY YMLE+K +LDAKGH LLEMPTGTGKT C++SL+ SYQ AHPE+GKLIYCTRTVPEM KCI ELKRV+      +G  G    +LALCLSSRRN+CIHE V+E +DREAVD  CRDMTASWVR+KA+A
Sbjct:   16 QLSHDFRSPNCMKDGSP-----PKDGSSPIGICFKLEGMDVYFPYKKMYPEQYKYMLEMKHALDAKGHGLLEMPTGTGKTACVLSLVVSYQLAHPEMGKLIYCTRTVPEMSKCIGELKRVVQNILAHVGQAGAASSLLALCLSSRRNMCIHETVMEAADREAVDSLCRDMTASWVRQKAQA 191
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI5.280e-9898.66General transcription and DNA repair factor IIH he... [more]
A0A482RW16_9ARCH3.450e-7975.33Helicase ATP-binding domain-containing protein (Fr... [more]
K8YZX4_NANGC7.950e-7882.07General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA1.170e-7578.77General transcription and DNA repair factor IIH he... [more]
A0A7R9U4D1_9STRA6.200e-7271.79General transcription and DNA repair factor IIH he... [more]
A0A7S1CFN5_9STRA1.820e-6868.39Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0S086_9CHLO2.600e-6767.12Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A835XSX7_9CHLO1.570e-6666.44Helicase ATP-binding domain-containing protein n=1... [more]
A0A7R9TIP8_9VIRI2.300e-6665.56Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S2GG08_9STRA6.700e-6660.77DNA helicase (Fragment) n=1 Tax=Dictyocha speculum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13586contigL-elsbetiae_contig13586:1213..4823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue7.5e-82
Seed eggNOG ortholog2880.D8LDN2
Preferred nameERCC2
KEGG koko:K10844
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001503,GO:0001701,GO:0001942,GO:0002244,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007272,GO:0007275,GO:0007346,GO:0007348,GO:0007399,GO:0007417,GO:0007568,GO:0008022,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008366,GO:0008544,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010001,GO:0010389,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010948,GO:0010972,GO:0012501,GO:0014003,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0021700,GO:0021782,GO:0022008,GO:0022010,GO:0022402,GO:0022404,GO:0022405,GO:0022607,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030198,GO:0030218,GO:0030282,GO:0030554,GO:0030855,GO:0030880,GO:0031214,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032288,GO:0032289,GO:0032291,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0033683,GO:0034101,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0040007,GO:0040016,GO:0042063,GO:0042303,GO:0042552,GO:0042592,GO:0042623,GO:0042633,GO:0043009,GO:0043062,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043249,GO:0043254,GO:0043388,GO:0043412,GO:0043588,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045786,GO:0045893,GO:0045911,GO:0045930,GO:0045935,GO:0045944,GO:0045951,GO:0045995,GO:0046483,GO:0047485,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048646,GO:0048699,GO:0048709,GO:0048731,GO:0048820,GO:0048821,GO:0048856,GO:0048863,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0055029,GO:0060218,GO:0060255,GO:0060429,GO:0061515,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070816,GO:0070911,GO:0071103,GO:0071695,GO:0071704,GO:0071817,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098773,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902750,GO:1902911,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1131@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Ec32 ortholog descriptionATP-dependent helicase, C-terminal
Ec32 orthologEc-19_001310.1
Exons3
Model size537
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13586.2725.1prot_L-elsbetiae_contig13586.2725.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13586 1300..4823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.4730632-UTR-L-elsbetiae_contig13586:1212..12991622815525.4730632-UTR-L-elsbetiae_contig13586:1212..1299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13586 1213..1299 +
1691682940.2028842-UTR-L-elsbetiae_contig13586:1212..12991691682940.2028842-UTR-L-elsbetiae_contig13586:1212..1299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13586 1213..1299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.4843605-CDS-L-elsbetiae_contig13586:1299..14321622815525.4843605-CDS-L-elsbetiae_contig13586:1299..1432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13586 1300..1432 +
1691682940.2164712-CDS-L-elsbetiae_contig13586:1299..14321691682940.2164712-CDS-L-elsbetiae_contig13586:1299..1432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13586 1300..1432 +
1622815525.4986327-CDS-L-elsbetiae_contig13586:2843..30191622815525.4986327-CDS-L-elsbetiae_contig13586:2843..3019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13586 2844..3019 +
1691682940.2245324-CDS-L-elsbetiae_contig13586:2843..30191691682940.2245324-CDS-L-elsbetiae_contig13586:2843..3019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13586 2844..3019 +
1622815525.510193-CDS-L-elsbetiae_contig13586:4682..48231622815525.510193-CDS-L-elsbetiae_contig13586:4682..4823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13586 4683..4823 +
1691682940.2347746-CDS-L-elsbetiae_contig13586:4682..48231691682940.2347746-CDS-L-elsbetiae_contig13586:4682..4823Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13586 4683..4823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13586.2725.1

>prot_L-elsbetiae_contig13586.2725.1 ID=prot_L-elsbetiae_contig13586.2725.1|Name=mRNA_L-elsbetiae_contig13586.2725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTV
CLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPE
GDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG*
back to top

mRNA from alignment at L-elsbetiae_contig13586:1213..4823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13586.2725.1 ID=mRNA_L-elsbetiae_contig13586.2725.1|Name=mRNA_L-elsbetiae_contig13586.2725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3611bp|location=Sequence derived from alignment at L-elsbetiae_contig13586:1213..4823+ (Laminarionema elsbetiae ELsaHSoW15)
CAACGCAGCGGAGAATAAGACGTTCCTTCGTGCTGCACAGCTGGTGTGCC
ATCGCAGTAGCTCTGCCCACATCAGGACACAGGGAAGATGAGGTTGGACC
TTGATGGGCTGGACGTGTTCTTCCCGTATGACTTCATGTACCCAGAGCAA
TATGACTACATGCTCGAGCTCAAGAGGTCCCTCGACGCGAAGGGTCACTG
CTTGCTCGAGATGCCCACAGGTGTGAATGGAAGTGCGCGGTGCAGCGTAG
GGGGCTGTTTAGATATTTGGCACATAATAGGCACTGGCTTACTCAGGCGG
ATGTTGCGTCCTACATATAGAATAGATACTGTACGCATCGTAGACTAATA
TATGGCGCGAACTATGCACTATTTCGTCAACTGCGTGCTGGACGTGTTAC
AGATTATTAAGAGGGGCGTGTTCCCTTACCAAAGAATGACAGCATTGGCT
ACTGTATTATAGGGGGAAACACCTCTAACCTAGCAGGACAGGAGAAGCGC
CCCCCCCTCGTCAACCCGCCTCGACGCAACGATATGGTGGTATGTAATTT
GATACTTGTAGTTCATCTGTCTCGGTGGCTAGCATGCCCTTTGTCCCTTT
GTTGAGTAGACAGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGACTTCAAAGTTCGAAAACTCCCGCGTTCATCGGGCTTGCCTGATCCTC
CCCTTGCACAATCACGGTTTAGTTTGTGGTGAGAAACACCAAAATGCGTA
GTGTGTATGTAGACAAACCAACGTGAACCCTACTACTGCTGTTGATACCG
AGGGGCAAAGGCATAGGCACAGGCCTATTGCGCCCCACCCCCCCCCTCCA
CCGCAGCAGCAGCAGCGTAGCTATCAAGCACGCCCGTCTTTGCTGTCCTG
ATCCTTGATGAAGGACGGTGTTGGTAGCCGAAGGCATGGCAGGCTACTCT
GAGCATGGAACTCGGGCAGTGGGAGTGTGCGTTCACACCATGCCCGCCTT
CCGCCGTAGTTCACCGTTTCGGGCGACCCGACCGCTTGGCGGGGGCCACT
CATTGCTGCTCTGTTGCTGAGCCTCGCCCCCTGGGCGAGCTGGAGACTAT
GTAGATGCATGTACAAGTATTTTTTTCTCTCGTGGGGGGCCACTGCTGCT
GTGTTGCTCGCTGCTTCTCGCCCCTTTCATTTATTTTTTTATTCACATAT
TTATTTCCAGTGCTCGATGGGCTCCCTGTCACGAGGACATCTTGCCAGAG
TACTGAACCGTGGTCACACAGAAGTGTTCCTTTCCCCAAGGCCCCCCCCC
ACTCCCCCCGTCTGCGGTGCTCGCCTAGAAATTTTGTCGCGAGAATAAGA
GTTCAGCCGTCCCTTTCCCTCGTCGACGGTGAGGTCGAAGCCCCTTATCG
GGCTGTATTTAGAAGCGAGTGAGAGTCCTCTGTATCTAGGTGGCTGCGGC
TGATATTTTTTGCTCTGCCCGCCCCCCCCTATGCGCTCTGTTTCCGTCTG
GGTTATTCCTGCTCTCCGGCGTCGCCCATTCCCTCGCCGTGGCTTCACCG
CGACCGCGGACCATCATCGCCAACAACGCCATATCACGTTGCATGGCATG
GCATGGCATGGCATGGTGGACGCGCCCACAGGCACCGGCAAGACCGTGTG
CCTGATCTCTCTCATCACCTCTTACCAGTTCGCGCACCCCGAGGTCGGCA
AGCTGATCTACTGCACGCGCACCGTGCCCGAGATGATGAAGTGCATCGAG
GAGCTGAAGAGGGTGATCGGGTATAGAAAGGAGCAGCTGGGCCCGGAAGG
AGACAAGGTTTGCGCTACTGCTGTGTATGCTGCTTTGTAATTCGAAAATA
CCTGTACCTAGTTATTAATACCAGTAGTTACCGTTACGACACAAGATAAC
ACACCCCCTGAACCGATTTTCAAAGATCGAGTACTCCACAGCGAGAAGAG
TGTGAGTCCCGAAAAAGGCGGCGTTCGAAACATCTCATCAAGAGCTGTCC
GAAAACGTGTCGTTTGGTATTATAAATCATACTCGTTGCGGAGCAACCGA
GCTTTGAATATCGGTCCAGGAGGTGTGTTTCTTGTGTCGTACATGGTAAC
TTTCATGGTTTAGCTAGTGGTGGTGTTGAGAGAGGAAACACTGAAGTAGC
ACCTCATTGGTCGTAAGGTAACTCTGCTTTAATTGATGCCATATATGATG
CCGTATTTAGTAAAAACAAAGTTCCATACTTTTAGTGGTGGTAGAAAAAC
TGAAGCTGCACCTCATTGGCCGTAAAGTAACTCTGCTTTGATTGACGCCA
TGTATGCTGCCGTACTAACAACATAGTTCCATAATTTTGGTGGTGGTGTT
GAGGGAGGGAGCACTGAAGCTGCAACTTGATCAATGCATTGGCCGTATTA
ACTCTGCTTTGATTGACGCCATGTATGCTGCCGTATTAAAAAAACTAGTT
CCGTAGTTTCGGTGGTGGTGTTGAGGGAGGAAAAACTGAAGCTGCACTTC
ATCACTTCATTGGCCGTAACTCTGTTTTGGCGCCATAAGTCAAGACGACG
TGGGCCGGTTACCGGTGTGTATGTACATACCCGGCAACTTGCAAGGGCTC
CATGCGCGCGTTTTGCACGTCGAACGATTTAACTTTAATGTTTTCTGCTT
TAAACTTCAGCAGTCTACACAAGGCAAGTCAAAACCCGCGAAAAAAGTTT
TTTCCAGGGGGGAGACCGCTGTTACAGACACGCTAAGCCTGCCTTCACTT
TAAGCGAAGAACCCAGGGCCCCGGTGGCCCGCTTTTTCTATATTTTGGGC
AGGGGATCTTGGTGGAATTGAATGGGCTGCCCCACCACTCGGCGTGATAG
TAAGTCAAAGTGACCATCTCGTATATACACACATTCATATGCGGGGGCAC
CCAATGCCGTTTTGGCGGTGGTGGAGTTATTTCGTTGGCATGCGGAAGGG
AATATTGCACCGCGATAGGACCAAAAGAATGTTATCGGGTCTGTGGGAAA
TCTTGGTGAAGTGAGTACCGTAGGTGACACAAGATACCACACCCCCTGGA
CCAAATTTTAGAGCTCCATAACTCCGTAACGAAGAAGGTGCCGGCACTAA
ACGACATTTATTTGGACAGCGCTCGAGTAGATCTTTCCAACGCCACCCCA
TTTCGGCACTGACAATGTTCTTGCTGGGGAGGAATCAAGCTTTGAAAATA
TGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGTTACATGCTTCAAAGT
GCCATGTATTTACTCGAAGTATATATTTTTTGTTTTTTCTTCTTTTCTTC
CCATTATTGGCTTATTCGTCGTCTGCCCCATTGGCCCCCCTCCTCCACCA
CGACTGGCAAAACGACCCAACCGGGGTCACACAGGAGGGGGCGGGGGGTG
GACCCCCTCCTGCGGTATGTTATGTATTTACGTTTCTCTGAAAAGGCGGG
GCCCCTGCTTGCTGCCGCAGGTCTTGGCGCTTTGCCTGAGCTCTCGCCGC
AACCTGTGCATCCACGAGAGGGTCATCGAGGAGAGCGACCGAGAGGCCGT
GGACGGGGCTTGCCGGGACATGACCGCTAGCTGGGTCAGGAAGAAGGCGG
AGGCGGGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13586:1213..4823+

>mRNA_L-elsbetiae_contig13586.2725.1 ID=mRNA_L-elsbetiae_contig13586.2725.1|Name=mRNA_L-elsbetiae_contig13586.2725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig13586:1213..4823+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGTTGGACCTTGATGGGCTGGACGTGTTCTTCCCGTATGACTTCAT
GTACCCAGAGCAATATGACTACATGCTCGAGCTCAAGAGGTCCCTCGACG
CGAAGGGTCACTGCTTGCTCGAGATGCCCACAGATGAGGTTGGACCTTGA
TGGGCTGGACGTGTTCTTCCCGTATGACTTCATGTACCCAGAGCAATATG
ACTACATGCTCGAGCTCAAGAGGTCCCTCGACGCGAAGGGTCACTGCTTG
CTCGAGATGCCCACAGGCACCGGCAAGACCGTGTGCCTGATCTCTCTCAT
CACCTCTTACCAGTTCGCGCACCCCGAGGTCGGCAAGCTGATCTACTGCA
CGCGCACCGTGCCCGAGATGATGAAGTGCATCGAGGAGCTGAAGAGGGTG
ATCGGGTATAGAAAGGAGCAGCTGGGCCCGGAAGGAGACAAGGCACCGGC
AAGACCGTGTGCCTGATCTCTCTCATCACCTCTTACCAGTTCGCGCACCC
CGAGGTCGGCAAGCTGATCTACTGCACGCGCACCGTGCCCGAGATGATGA
AGTGCATCGAGGAGCTGAAGAGGGTGATCGGGTATAGAAAGGAGCAGCTG
GGCCCGGAAGGAGACAAGGTCTTGGCGCTTTGCCTGAGCTCTCGCCGCAA
CCTGTGCATCCACGAGAGGGTCATCGAGGAGAGCGACCGAGAGGCCGTGG
ACGGGGCTTGCCGGGACATGACCGCTAGCTGGGTCAGGAAGAAGGCGGAG
GCGGGGTGAGTCTTGGCGCTTTGCCTGAGCTCTCGCCGCAACCTGTGCAT
CCACGAGAGGGTCATCGAGGAGAGCGACCGAGAGGCCGTGGACGGGGCTT
GCCGGGACATGACCGCTAGCTGGGTCAGGAAGAAGGCGGAGGCGGGGTGA
back to top