prot_L-elsbetiae_contig13586.2725.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13586.2725.1
Unique Nameprot_L-elsbetiae_contig13586.2725.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length150
Homology
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 8.860e-98
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 149
            MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRK+QLGPEG+KVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 149          
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A482RW16_9ARCH (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW16_9ARCH)

HSP 1 Score: 245 bits (626), Expect = 1.250e-78
Identity = 113/149 (75.84%), Postives = 131/149 (87.92%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 149
            M+ +L+GL+VFFPYD+MY EQYDYML LKR++DAKGH LLEMPTGTGKTVCLISLITSYQF +P+ GKLIYCTRTVPEM KC++E+K+VI YR++ LGPEG +VLALCLSSRRN+CIH RV EESDRE VD  CRDMTASWVR  A+ G
Sbjct:   22 MKFNLEGLEVFFPYDYMYKEQYDYMLNLKRAIDAKGHALLEMPTGTGKTVCLISLITSYQFQYPQTGKLIYCTRTVPEMAKCMDEIKKVIEYRQKLLGPEGGRVLALCLSSRRNMCIHPRVQEESDRETVDTKCRDMTASWVRASAQKG 170          
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 256 bits (655), Expect = 1.300e-77
Identity = 119/145 (82.07%), Postives = 135/145 (93.10%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKK 145
            +R DLDGLD+FFPYD +Y EQY+YMLELKR+LDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEM+KC+EE+++VI YR + +G EG KVLA+CLSSRRNLCIHERV+EESDREAVD ACR MTASWVR++
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGKVLAVCLSSRRNLCIHERVMEESDREAVDSACRSMTASWVRQR 146          
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.940e-75
Identity = 115/146 (78.77%), Postives = 132/146 (90.41%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 146
            M   L  + V+FPYD+ YPEQY YM ELK +LDAKGHCLLEMPTGTGKTVCLI+LIT+YQ+ HPEVGKLIYCTRTVPEM+KC+EE+KRVI YR+EQLGP G KVLALCLSSRRNLCIH+RV+E++DREAVDGACRDMTASWVR++A
Sbjct:    1 MIFTLGDITVWFPYDYCYPEQYAYMSELKTTLDAKGHCLLEMPTGTGKTVCLIALITAYQYQHPEVGKLIYCTRTVPEMVKCVEEIKRVIRYREEQLGPAGSKVLALCLSSRRNLCIHQRVLEDADREAVDGACRDMTASWVRQRA 146          
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 237 bits (605), Expect = 1.910e-70
Identity = 110/149 (73.83%), Postives = 129/149 (86.58%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 149
            MR  L+ +DVFFPY  +Y EQ+DYM+ELKR+L+A GH  LEMPTGTGKTVCL+SLITS QFA PE+GK IYCTRTVPEM+KC+EELKRV+ YR E +G EG K+LALCLSSRRN+CIH+RV+EESDREAVD ACR MTASWVRK+A+ G
Sbjct:   45 MRFRLEDVDVFFPYPSVYREQFDYMVELKRALEAPGHAALEMPTGTGKTVCLMSLITSVQFARPEMGKFIYCTRTVPEMVKCVEELKRVVNYRAECVGAEGRKILALCLSSRRNMCIHDRVLEESDREAVDAACRSMTASWVRKRAQEG 193          
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A7S1CFN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFN5_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.330e-68
Identity = 106/155 (68.39%), Postives = 121/155 (78.06%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLD----------AKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKK 145
            M+  LDGL V+FPY ++Y EQ  YM ELKR+LD          AKGHC+LEMPTGTGKTV L+SLITSYQ AHP VGKL+YCTRTVPEM KC+ ELKRVI YR ++LGPEG  VLA CLSSRRN+CIHERV+ E+DRE VD ACR  TA WVR+K
Sbjct:    1 MKFLLDGLQVYFPYPYVYSEQLKYMRELKRALDVAFAPGVSTTAKGHCMLEMPTGTGKTVALLSLITSYQLAHPTVGKLMYCTRTVPEMTKCVGELKRVIEYRVKELGPEGGNVLACCLSSRRNMCIHERVMAEADREQVDAACRKRTAPWVREK 155          
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A7S0S086_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S086_9CHLO)

HSP 1 Score: 214 bits (546), Expect = 4.780e-67
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 146
            MR  L+GL V+FPY+++YPEQY YMLELKRSLDA+GH LLEMPTGTGKT+ L+SLITSYQ AHPEVGKL+YCTRTVPEM K + EL+ +I YR + LGP+   ++AL LSSR+NLC+H  V EE  RE+VD  CR +TASWVR++A
Sbjct:    1 MRFKLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHSLLEMPTGTGKTITLLSLITSYQLAHPEVGKLVYCTRTVPEMEKVLAELQELIAYRSKYLGPDAAPIMALGLSSRKNLCVHPTVAEEGSRESVDSGCRKLTASWVRERA 146          
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A835XSX7_9CHLO (Helicase ATP-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSX7_9CHLO)

HSP 1 Score: 211 bits (538), Expect = 2.900e-66
Identity = 97/146 (66.44%), Postives = 118/146 (80.82%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 146
            M+ +L+GL V+FPY+++YPEQY YMLELKRSLDA+GHCLLEMPTGTGKT+ L+SLITSYQ AH EVGKLIYCTRTVPEM K + EL  ++ YR + L      +LAL LSSR+NLC+H RV EE  RE+VD  CR +TASWVR++A
Sbjct:    1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHCLLEMPTGTGKTITLLSLITSYQLAHKEVGKLIYCTRTVPEMEKVLSELSELVSYRSQHLPQGAGSILALGLSSRKNLCVHPRVAEEGSRESVDAGCRRLTASWVRERA 146          
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A7R9TIP8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIP8_9VIRI)

HSP 1 Score: 207 bits (527), Expect = 4.300e-66
Identity = 99/151 (65.56%), Postives = 119/151 (78.81%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIE--ESDREAVDGACRDMTASWVRKKAEAG 149
            M+ +LDG+DV+FPYD++YPEQY+YMLELKR+LDAKGHCLLEMPTGTGKT+ L+SLITSYQ A+P VGKL+YCTRTVPEM K + ELK +   R   LG      LAL LSSRRN+CI+E V+    +DRE+VD  CR +TASWVR  AE G
Sbjct:    1 MKFNLDGMDVYFPYDYIYPEQYEYMLELKRTLDAKGHCLLEMPTGTGKTITLLSLITSYQVANPGVGKLVYCTRTVPEMEKVMAELKHLHSMRAHDLGERAKNFLALVLSSRRNMCINESVLAGAATDRESVDSRCRRLTASWVRDSAEVG 151          
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Match: A0A3L6VP36_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VP36_9STRA)

HSP 1 Score: 208 bits (529), Expect = 5.090e-65
Identity = 96/150 (64.00%), Postives = 119/150 (79.33%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEV-GKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPEGDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 149
            MRL+++GL+V FPY  +Y EQ  YM ELKR+LDAKGH +LEMPTGTGKTV L+SL+ SY++AHP+  GKLIYCTRTVPEM KC+EE+K V+ YR E LG +   + A+CLSSRRN+C+H RV+   D E VDG CR MTASWVR +A+AG
Sbjct:    1 MRLEIEGLEVLFPYPRVYAEQVTYMRELKRALDAKGHAMLEMPTGTGKTVALLSLVLSYKYAHPQTTGKLIYCTRTVPEMSKCVEEIKHVMTYRAEVLGAQATTITAVCLSSRRNMCVHPRVMNNPDGETVDGQCRQMTASWVRGRADAG 150          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13586.2725.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI8.860e-9898.66General transcription and DNA repair factor IIH he... [more]
A0A482RW16_9ARCH1.250e-7875.84Helicase ATP-binding domain-containing protein (Fr... [more]
K8YZX4_NANGC1.300e-7782.07General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA1.940e-7578.77General transcription and DNA repair factor IIH he... [more]
A0A7R9U4D1_9STRA1.910e-7073.83General transcription and DNA repair factor IIH he... [more]
A0A7S1CFN5_9STRA3.330e-6868.39Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0S086_9CHLO4.780e-6767.12Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A835XSX7_9CHLO2.900e-6666.44Helicase ATP-binding domain-containing protein n=1... [more]
A0A7R9TIP8_9VIRI4.300e-6665.56Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A3L6VP36_9STRA5.090e-6564.00Helicase ATP-binding domain-containing protein n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006554Helicase-like, DEXD box c2 typeSMARTSM00488deadxpdcoord: 8..149
e-value: 3.9E-9
score: 3.1
IPR006935Helicase/UvrB, N-terminalPFAMPF04851ResIIIcoord: 19..65
e-value: 1.5E-5
score: 25.1
IPR010614DEAD2PFAMPF06733DEAD_2coord: 71..145
e-value: 4.2E-16
score: 59.1
NoneNo IPR availableGENE3D3.40.50.300coord: 16..148
e-value: 2.0E-25
score: 91.4
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 3..147
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 3..147
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 7..149
score: 20.172
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13586contigL-elsbetiae_contig13586:1300..4823 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13586.2725.1mRNA_L-elsbetiae_contig13586.2725.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13586 1213..4823 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13586.2725.1 ID=prot_L-elsbetiae_contig13586.2725.1|Name=mRNA_L-elsbetiae_contig13586.2725.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTV
CLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKEQLGPE
GDKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006554Helicase-like_DEXD_c2
IPR006935Helicase/UvrB_N
IPR010614DEAD_2
IPR001945RAD3/XPD
IPR014013Helic_SF1/SF2_ATP-bd_DinG/Rad3
IPR027417P-loop_NTPase