mRNA_L-elsbetiae_contig1357.2718.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1357.2718.1 vs. uniprot
Match: D7FXJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ0_ECTSI) HSP 1 Score: 544 bits (1401), Expect = 5.270e-172 Identity = 350/612 (57.19%), Postives = 383/612 (62.58%), Query Frame = 1 Query: 1 QENLGALAQHMCDTGRLGELCLLRLADCPASSXXXXXXXXXXXXYSISEEEGWRPSAVVQGALWGLARGSNVADLVEGAAAAAGDWGAADGGGGKRGRSGIGSSRRRGEKRGRKANYFDCLYTLYMARGKAVEAARAQDELRE-------RWEGGAHSAAATLPFAAAAQRARLAALNALAVAPVXXXXXXXXXXXXXXXXXXXXXXXXXGAVASICPPLGERRLDAAGRPAGVRTAAVLEREAVAAAXXXXXXXXXXXXXXXXXXXXXXXXVSVTVVTRAGVSGVLEALRSAGRFEEAADVVLRGL-DQPRTMVDEMKKVVSDLALACVKAEDIAQGFEPGPIPPLQRGVGPLKPRVP-PAATASASVTTRT--KAAERAASLWPVLRQLLRLDGTDSGFSYHATAAKVLLEGMPASTLPKWLEDSYLGRPQLLPDPPADANAFPPPQPRALPAPWKVFTPGSGGDGARSPPDPTALLDMYVFDGRLEEACLFLSRLLDVEEVADIGALTRLTPETSGGTDFLPYASIDRLFALCEASLARQSTALAAGAGKAPGPAADGLNHAFETAQERLTQYFRIAKAVSDQAQPNRAA--AAAGGESSNTSAFMLTD 1797 +ENL AL QHMC++GRLGELC L LADCP GW PS VV ALW LAR S+V DLV GG G +GRS + NY+DCLY YMARG+ V AARAQDELRE RW+ HSAA+TLPFAA AQRARLAALNAL+VA VASICPP GERRLD GRPAGVRT AVL REAV+AA V R GV+EAL GR+EEAADVVL GL QPR MV+EM K+VS LA ACV+ EDIA+G+E GP+PPL RGVGPLKPRVP P+A A +A E A SLWPVLRQLLRLD D+ FSYH A VLLEGMPASTLP+W+EDSYLG Q LPDPPA+ANAFPPPQPRAL APWK FT G GG+GA S PDPT LLDMYV DGRLEEACLFLSR+LD EV DIGALT L PE GGTD+LPYASIDRLFAL EASLAR K A GL AFETAQERL Y ++AKAVSDQAQPNRAA AAAG + SAFM+TD Sbjct: 1282 KENLAALVQHMCESGRLGELCSLSLADCPHGG-------------------GWHPSGVVDSALWPLARRSSVDDLV--------------GGPGGKGRSRV--------------NYYDCLYAFYMARGEEVAAARAQDELRESPARSFDRWK--PHSAASTLPFAAGAQRARLAALNALSVA---------------GNAYPSSDDTAAATVASICPPAGERRLDGYGRPAGVRTVAVLGREAVSAAGAIGLAVVKGREGGRG--------ARVWWTVRGERRGVVEALALGGRYEEAADVVLEGLAHQPRLMVEEMDKLVSALARACVRTEDIAKGYEVGPLPPLVRGVGPLKPRVPVPSAEAXXXXXXXXXXRAPEHATSLWPVLRQLLRLDSADNNFSYHTAAVAVLLEGMPASTLPRWVEDSYLGLGQELPDPPANANAFPPPQPRALLAPWKAFTSGRGGNGA-SGPDPTKLLDMYVMDGRLEEACLFLSRVLDTREVGDIGALTELVPEKDGGTDYLPYASIDRLFALSEASLARSKGPPTTQ--KEGWVTAGGLAGAFETAQERLVGYLKVAKAVSDQAQPNRAAEAAAAGRGICDASAFMMTD 1818
BLAST of mRNA_L-elsbetiae_contig1357.2718.1 vs. uniprot
Match: A0A6H5KLL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL3_9PHAE) HSP 1 Score: 532 bits (1370), Expect = 1.700e-170 Identity = 357/621 (57.49%), Postives = 391/621 (62.96%), Query Frame = 1 Query: 1 QENLGALAQHMCDTGRLGELCLLRLADCPASSXXXXXXXXXXXXYSISEEEGWRPSAVVQGALWGLARGSNVADLVEGAAAAAGDWGAADGGGGKRGRSGIGSSRRRGEKRGRKANYFDCLYTLYMARGKAVEAARAQDELRERWEGGAHSAAATLPFAAAAQRARLAALNALAVAPVXXXXXXXXXXXXXXXXXXXXXXXXXGAVASICPPLGERRLDAAGRPAGVRTAAVLEREAVAAAXXXXXXXXXXXXXXXXXXXXXXXX---------------VSVTV-VTRAGVSGVLEALRSAGRFEEAADVVLRGL-DQPRTMVDEMKKVVSDLALACVKAEDIAQGFEPGPIPPLQRGVGPLKPRVP-PAATASASVTTRT--KAAERAASLWPVLRQLLRLDGTDSGFSYHATAAKVLLEGMPASTLPKWLEDSYLGRPQLLPDPPADANAFPPPQPRALPAPWKVFTPGSGGDGARSPPDPTALLDMYVFDGRLEEACLFLSRLLDVEEVADIGALTRLTPETSGGTDFLPYASIDRLFALCEASLARQSTALAAGAGKAPGPAADGLNHAFETAQERLTQYFRIAKAVSDQAQPNRAA--AAAGGESSNTSAFMLTD 1797 +ENL ALAQHMC++GRLGELC L LADCP W S VV+ ALW LAR S+V DLV G G G SR NY+DCLY YMARG+ V AARAQDELRER E AHSAA+TLPFAA AQRARLAALNAL+VA XXXXXXXX VASICPP GERRLD GRPAGVRT AVL REAV+AA V V+V V A VSG++EAL AGR+EEAADVVL GL QPR MV+EM K+VS LA ACV+ EDIAQG+E GP+P L RGVGPLKPRVP P A A T +A E A SLWPVLRQLLRLD D+ FSYH VLLE MPASTLP W+EDSYLG Q +PDPPA+ANAF PPQP+AL APWK FT G GG+G S PDPT LLDMYV DGRLEEACLFLSR+LD E+ DIGALT L PE GGTD+LPYASIDRLFAL EASLAR A K A GL AFETAQERL QYF++AKAVSDQAQPNRAA AAAG + + S FM+ D Sbjct: 863 KENLAALAQHMCESGRLGELCSLSLADCPRGGD-------------------WHTSRVVERALWPLARRSSVDDLVGGPC-------------------GKGRSR---------VNYYDCLYAFYMARGEEVAAARAQDELRERLE--AHSAASTLPFAAGAQRARLAALNALSVA-----------GNAYPSSDXXXXXXXXXXVASICPPPGERRLDGYGRPAGVRTVAVLGREAVSAAGAIGLAVANAAKEEGVQEFGGRYAEXXXXXXXXXXXAVGVQVSVEVGNADVSGLVEALALAGRYEEAADVVLEGLAHQPRLMVEEMDKLVSALARACVRTEDIAQGYEVGPLPLLVRGVGPLKPRVPVPWAEAEGDTTXXXXXRAQEHATSLWPVLRQLLRLDSADNNFSYHTATVAVLLEEMPASTLPPWVEDSYLGLGQEVPDPPANANAFLPPQPQALLAPWKAFTSGRGGNGP-SGPDPTKLLDMYVLDGRLEEACLFLSRVLDTREIGDIGALTELVPEKDGGTDYLPYASIDRLFALSEASLARSKGAPTTQ--KEGRVTAGGLAGAFETAQERLVQYFKVAKAVSDQAQPNRAAEAAAAGRGTCDASTFMMMD 1420
BLAST of mRNA_L-elsbetiae_contig1357.2718.1 vs. uniprot
Match: A0A836CGQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ6_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.970e-12 Identity = 92/297 (30.98%), Postives = 123/297 (41.41%), Query Frame = 1 Query: 847 LRSAGRFEEAADVVLRGLDQ--PRTMVDE-MKKVVSDLALACVKAEDIAQGFEPGPIPPLQRG-VGPLKPRVPPAATASASVTTRTKAAERAASLWPVLRQLL-RLDGTDSGFSYHATAAKVLLEGMPASTLPKWLEDSYLGRPQLLPDPPADANAFPPPQPRALPAPWKVFTPGSGGDGARSPPDPTALLDMYVFDGRLEEACLFLSRLLDVEEVADIGALTRLTPETSGGTDFLPYASIDRLFALCEASLARQSTALAAGAGKAPGPAADGLNHAFETAQERLTQYFRIAKAVSD 1722 L +AG E AA + L Q R D + +VV+ LA AC + E A G +P G GPL PP A A +A R W +LR+LL RLDG ++ F+ H A + +LE P LP+WL S G+ D A P LL + + G L EAC +RL D+E +AD G L G D++PY ++D LFA CE Q + AAG G + L A + A++ L Y R V D Sbjct: 1416 LLAAGCVEAAAALALAHWPQRAARARRDAALARVVAVLANACARYESNADGALETDMPLSDAGGAGPL---TPPGARAG------PEADRRRGDAWALLRELLFRLDGAETNFALHVAAVRAVLETRPRVPLPRWLVASIEGQ--------RDGXXX------------XXXXXXXXXXFAXXAAHPALLLGVLIEHGELIEACGIAARLFDLE-LADKGELAARRRGRRAGRDWVPYQTLDALFAACE-----QRLSAAAGGGDSAA-----LRLAHDCARDALELYLRDVVGVLD 1672 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1357.2718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1357.2718.1 >prot_L-elsbetiae_contig1357.2718.1 ID=prot_L-elsbetiae_contig1357.2718.1|Name=mRNA_L-elsbetiae_contig1357.2718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=590bp MCDTGRLGELCLLRLADCPASSSSSSSSSSSSLSYSISEEEGWRPSAVVQback to top mRNA from alignment at L-elsbetiae_contig1357:17350..26696- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1357.2718.1 ID=mRNA_L-elsbetiae_contig1357.2718.1|Name=mRNA_L-elsbetiae_contig1357.2718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9347bp|location=Sequence derived from alignment at L-elsbetiae_contig1357:17350..26696- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1357:17350..26696- >mRNA_L-elsbetiae_contig1357.2718.1 ID=mRNA_L-elsbetiae_contig1357.2718.1|Name=mRNA_L-elsbetiae_contig1357.2718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3540bp|location=Sequence derived from alignment at L-elsbetiae_contig1357:17350..26696- (Laminarionema elsbetiae ELsaHSoW15)back to top |